BAC Information

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BAC

Clone NameB6Ng01-124N14
Chromosome17 (Build37)
Map Location 51,133,842 - 51,134,959
singlet/doubletsinglet
Overlap geneTbc1d5
Upstream geneRftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432
Downstream geneLOC100043451, LOC100043452, Satb1, EG628919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124N14.bB6Ng01-124N14.g
ACCDH927648DH927649
length1,2651,097
definitionDH927648|Mus musculus domesticus DNA, BAC clone: B6Ng01-124N14, 5' end.DH927649|Mus musculus domesticus DNA, BAC clone: B6Ng01-124N14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatcagaccttcaaagaagacctaataccaatgctcttcaaact
attccataaaatagaaacagaaggaacactacctaatccattctatgaag
ccataattacactgatatgtaaaccacacaaagaacaacttctggaggaa
tcaccatccctgacctcaagctgtactacaaagcaattgtaataaaaact
gactggtattggtacagtgacaggcaggtagatcaatggaatagaattga
agatccagaaatgaacccacagatctatctatggtcatttgatctttgaa
aaaggagctaaaaccacccagtggaaaaaagacagcattttcaacaaatg
gtgctggttcaactgttggttagcatggagaagaatgtaaaccgatccaa
tcttatctccttgaacaaagctcaagtccaagtggatcaaggacctccac
ataaaactagatacactgaaactgatagaaaagaaagtgggaaagagcct
cgaggacatgggcacaggggaaaatttcctgaatagaacaccaacagctt
atgttctaagatcaggaaatgacaaatgggacctcataaaattgcaaagc
ttctgtaaagccaaggacacactgtcaatcggacaaacccgcaaccaaca
gattgggaaaagatctttatcaatcctacatccaatagagggctaatatc
caataatatacaaagaactcaagaagttaagactccagagaaccaaataa
ccctattaaaagtggggtacagagttctcaactgaggaataccgaaaggc
tgagaagcacctgaaaaaatgttcaacatccttagtcaccagggaaatgc
aaatcaaaacaaccctgagattctacctcacaccagtcagaatggctaag
ttcaaaactcatgtgacagcagatgctggcgaggatgtggagaagaggaa
cactcctccactgctcgtgggattgcaagctggtacaaccactttggaaa
tcagtgtggcagttcctcagaaaactgggacatagtactatctgaggacc
agctatactacctcatgggcaatacccaaagattatctaacatgtataga
cccattgctccactacgttcatagcaggctattttatatagcagagacct
gtgaaaactaaggtccttcacgagaattggaacggagtggatccatacat
gacattcatctcgcttaaaaccgtgaattttgcaatagaaaacttctctc
agctcacagtcgttg
gaattcatgaaaggagatttattcactgtggccacattgggaagagggac
aaaaatctagaaaatgtttcaagtttgtcttcagtgtcctgaagggagat
cacatttaaagagaggaccaaggatatgcacaagtaagcagtcccactca
gggtgtgctccatccaccactatcggatccccagtctcaccctattgggt
gatctacaggttgttagggttgtgagaaaactctttcctggaaacaaagg
tcctcttttggttgctgccttttcctttatgtaacattaaatttcctgag
aaaattccaatttgtttgaggcccattgtttcagtagtcttgatagtcaa
gttgactcaagcgtctctttaagatatctccatttctgttagactggtta
cagtttcctactttctgtcttagcatctcactcttgaggtgcaacatgtc
tatattggaaacaaatataatgcaaatagggagtaaaattagaacatgtt
ttcttaatgtggggcagcaatgcatgcaacccattttcataagctcttgg
tcttttgttacttttagaaaggttggctcaggcagtttcatcttgttgtt
ttgagagggtcttttcaaaatgcctaggctggccacaaatttatgaacct
cttcttttagctttacaactcacaggaaagcacaccatgacttctgtgac
tttatatcagttcttccaacaatcccccccccccccaagccccttgcttc
tgaatagtattttctgaagacaaagtctagtgctttgttttccatagtcc
ttcaatgctggggaatgatcaccctggttggtctggtttgatcccatgtt
tggagatataagtcaggagttcatgccaataaaccctttatacccaagct
aagcatatgtggtactgagaatgacctttaggtcagaattgcgaaatcat
tctgtttgtgctatgggtaatatcctagctctcaaaatgtcatcgggtct
tatcagagcttacttctcagtattattctgtagaatgttaagctttcact
acatagctacgatcatacaaattgtagccataagtctttacaaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_51133842_51134959
seq2: B6Ng01-124N14.g_69_1165 (reverse)

seq1  GTTTTTGTAAAAGACTTATGGCTTACAATTGTGTATGATTTGGTAGCTAT  50
      |||||||| ||||||||||||| ||||||| |||||||  | ||||||||
seq2  GTTTTTGT-AAAGACTTATGGC-TACAATT-TGTATGA--TCGTAGCTAT  45

seq1  GGTAGTGAAAAGCCTTATAACATTCTACAGAATATAACTAGAGAAGTATA  100
       |||||| |||||    |||||||||||||||||  ||| |||||||| |
seq2  -GTAGTG-AAAGC---TTAACATTCTACAGAATAATACT-GAGAAGTA-A  88

seq1  GCTTCTGATAAGGAACCCGAATGACATTTTTGAGATGCTAGGATATTACC  150
      || |||||||||  ||||| |||||| |||||||| ||||||||||||||
seq2  GC-TCTGATAAG--ACCCG-ATGACA-TTTTGAGA-GCTAGGATATTACC  132

seq1  CATAGCACAAACAGAATGGATTTCGCATGTCTGACCTAAAGGTCATTTCT  200
      ||||||||||||||||| |||||||||  ||||||||||||||||||   
seq2  CATAGCACAAACAGAAT-GATTTCGCAATTCTGACCTAAAGGTCATT--C  179

seq1  TCAGTACACCATATGCTTAGCTTGGGTATAAAGGGTTTATTGGCATGAAC  250
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACCACATATGCTTAGCTTGGGTATAAAGGGTTTATTGGCATGAAC  229

seq1  TCCCTGACTTATATCTCCAAACATGGGATCAAACCAGACCAACCAGGGTG  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-CCTGACTTATATCTCCAAACATGGGATCAAACCAGACCAACCAGGGTG  278

seq1  ATCATTCCCCAGCATTGAAGGACTATGGAAAACAAAGCACTAGACTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCCCCAGCATTGAAGGACTATGGAAAACAAAGCACTAGACTTTGT  328

seq1  CTTCAGAAAATACTATTCAGAAGCAAGGGGCTT-GGGGGGGGGGGGATTG  399
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTCAGAAAATACTATTCAGAAGCAAGGGGCTTGGGGGGGGGGGGGATTG  378

seq1  TTGGAAGAACTGATATAAAGTCACAGAAGTCATGGTGTGCTTTCCTGTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGAACTGATATAAAGTCACAGAAGTCATGGTGTGCTTTCCTGTGA  428

seq1  GTTGTAAAGCTAAAAGAAGAGGTTCATAAATTTGTGGCCAGCCTAGGCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAAGCTAAAAGAAGAGGTTCATAAATTTGTGGCCAGCCTAGGCAT  478

seq1  TTTGAAAAGACCCTCTCAAAACAACAAGATGAAACTGCCTGAGCCAACCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAGACCCTCTCAAAACAACAAGATGAAACTGCCTGAGCCAACCT  528

seq1  TTCTAAAAGTAACAAAAGACCAAGAGCTTATGAAAATGGGTTGCATGCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAAGTAACAAAAGACCAAGAGCTTATGAAAATGGGTTGCATGCAT  578

seq1  TGCTGCCCCACATTAAGAAAACATGTTCTAATTTTACTCCCTATTTGCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCCCACATTAAGAAAACATGTTCTAATTTTACTCCCTATTTGCAT  628

seq1  TATATTTGTTTCCAATATAGACATGTTGCACCTCAAGAGTGAGATGCTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGTTTCCAATATAGACATGTTGCACCTCAAGAGTGAGATGCTAA  678

seq1  GACAGAAAGTAGGAAACTGTAACCAGTCTAACAGAAATGGAGATATCTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAAGTAGGAAACTGTAACCAGTCTAACAGAAATGGAGATATCTTA  728

seq1  AAGAGACGCTTGAGTCAACTTGACTATCAAGACTACTGAAACAATGGGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACGCTTGAGTCAACTTGACTATCAAGACTACTGAAACAATGGGCC  778

seq1  TCAAACAAATTGGAATTTTCTCAGGAAATTTAATGTTACATAAAGGAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAAATTGGAATTTTCTCAGGAAATTTAATGTTACATAAAGGAAAA  828

seq1  GGCAGCAACCAAAAGAGGACCTTTGTTTCCAGGAAAGAGTTTTCTCACAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAACCAAAAGAGGACCTTTGTTTCCAGGAAAGAGTTTTCTCACAA  878

seq1  CCCTAACAACCTGTAGATCACCCAATAGGGTGAGACTGGGGATCCGATAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAACAACCTGTAGATCACCCAATAGGGTGAGACTGGGGATCCGATAG  928

seq1  TGGTGGATGGAGCACACCCTGAGTGGGACTGCTTACTTGTGCATATCCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGATGGAGCACACCCTGAGTGGGACTGCTTACTTGTGCATATCCTT  978

seq1  GGTCCTCTCTTTAAATGTGATCTCCCTTCAGGACACTGAAGACAAACTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCTCTTTAAATGTGATCTCCCTTCAGGACACTGAAGACAAACTTG  1028

seq1  AAACATTTTCTAGATTTTTGTCCCTCTTCCCAATGTGGCCACAGTGAATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTCTAGATTTTTGTCCCTCTTCCCAATGTGGCCACAGTGAATA  1078

seq1  AATCTCCTTTCATGAATTC  1118
      |||||||||||||||||||
seq2  AATCTCCTTTCATGAATTC  1097