BAC Information

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BAC

Clone NameB6Ng01-125P13
Chromosome17 (Build37)
Map Location 20,864,249 - 20,967,148
singlet/doubletdoublet
Overlap geneV1re6, LOC100041976, V1re3, V1re1
Upstream geneEG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2
Downstream geneV1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125P13.bB6Ng01-125P13.g
ACCDH928460DH928461
length1,1461,034
definitionDH928460|Mus musculus domesticus DNA, BAC clone: B6Ng01-125P13, 5' end.DH928461|Mus musculus domesticus DNA, BAC clone: B6Ng01-125P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,965,998 - 20,967,148)(20,864,249 - 20,865,299)
sequence
gaattctttagagctctgggcctctccctcgactccagccctcacaaagt
tcttctatccagcaataaagtcaataacttcctaacacataagttatgga
acttaaaatcaccccacagtagaataaagtcatttggaaattcttggcag
ttcaatgaagtattagtaaaatgacaagcacaatgttgtaatctacaata
aaaaatcattacactcttcatacaaccaaatgcaaaataactggtaatgc
ttgcatcaaaatattctagaaattacagttttcatgtttacaataacagg
aagtctaaatatagccccatcctagaagaatgtttaaatataccacttct
taaaaaaattaatccagcaccacatggtacataaactaatgttaccttct
taattaaaaggcctagaataaagaattctaagattaatgatgaaaatgag
aattattcattgttcaataattaataaaaaatgaagttattggtttaaca
tttgccttctgtccactcagtgtccactgtaggaagttttaagccgacat
agaagtgaaatatcatcttttggactcatatataagtcattggtccccac
atttccctgtaagtggataattcattataatgagttggaaacacagagag
ctattgagcttatggtttttgcttactcaaagaaagttgaaaccagtcaa
aggaagaagaagatgttctgaaacagaatcacatttgctccatcactgat
cctcacgtcacccaaatgtgctggataggatgacacagcacaataacaaa
ttggaagagtgaattaaaaacctcttcaatacttagggaagcaatttaat
gagtttcaaatttcctgacaacactcataccctataacaagtttgtcatt
cacaagcagccctcagtagttctgtttcctgaaagaaaaacatcatgaag
atagttgaacaagtgcctgttttgtagaagaaacttgttttgggtatatg
tccaagatagtatggctggatgctgttgagatgaattctcattctctgaa
gagtacacattgattttcataggtgattaacgtttcattcccagtagcca
tggaggcagtgttcattaatccaaatgcctggctagcatggctgtc
gaattcaattgtgcttgagcagttggagaccatgataccttcagttgaat
agatacacatgggatgctcacgtagttatggaagtacagatacactaaat
cagtctatgtggatagcttaaaagaatccctaatcagtaaactctagaaa
tatctacccaagaatagatcctcagtttcgaccaaaggctttctttacta
ctgctttcatgcaggtcatttgatattcttatatcactaattgtagtgat
gggcctctgaaaaattaggtcccacataattagattagttgctatcctat
ctgacctcaaagaagaaaagtgaatcaatagcaatctttggaaccactgc
acattctgtctgacatgaagttcctcatacttgacctattatcacctgat
gcaggttcaatagcagcttcccaagatattctggtgtaatcttttcatta
tttatggtgtaatgttttctgaaggaacttgaatattgaataaaatctgt
ctctcttcagtgcttttcatctcagagaccattgttctacattgtagtta
ttcagatttaaaatggtttaaattttatcttcaaggaacctttgtaatac
aatatgaatatgtttttattcagagatatattttattcatattttgtcct
catttgacttatcattttacttcttgtaatttggtattctatagaacaca
gtgtttcatctgaaatccaatttgttggttttctctcttaggttgaatga
aatgatacatatgtgaaatcttcagtgaatgtaaacttataagacaggca
aaattaaacatgcaggagaatattctgtaacctatgaatgtgaaatatcc
catgtgtgagtcttgaaactctggacctttctacataacaacttttatga
cataaattgtcatcccacacaatcatatgcctagatcacatgtcatagag
atacaatgtgaaaatagtattatgtactatgctctgactattataatgcc
atatttacatatctattatcttttctaaatgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_20965998_20967148
seq2: B6Ng01-125P13.b_49_1194 (reverse)

seq1  GACAGCTCATGCTAG-CAAGCATTTGGGATAAATGGAACACTG-CTCCAT  48
      |||||| |||||||| || |||||| |||| ||| |||||||| ||||||
seq2  GACAGC-CATGCTAGCCAGGCATTT-GGATTAAT-GAACACTGCCTCCAT  47

seq1  TGCTACTGGGAATGAAACGTTTAAATCCACTATGAAAATCAATGTGGTAC  98
       ||||||||||||||||||||  ||||  |||||||||||||||| ||||
seq2  GGCTACTGGGAATGAAACGTT--AATCACCTATGAAAATCAATGT-GTAC  94

seq1  TCTTCAGAAGAATGAGAATCAATCCTCAACAGCATCCAGCCATACTAATC  148
      ||||||| |||||||||||  || |||||||||||||||||||||| |||
seq2  TCTTCAG-AGAATGAGAATTCAT-CTCAACAGCATCCAGCCATACT-ATC  141

seq1  TTGGACATATACCCAAAACAAGTTTCTTCTACAAGACAGGCACTTGTTCA  198
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGGACATATACCCAAAACAAGTTTCTTCTACAAAACAGGCACTTGTTCA  191

seq1  ACTATCTTCATGATG-TTCTCTTTCAGGAAACAGAACTACTGAGGGCTGC  247
      ||||||||||||||| || |||||||||||||||||||||||||||||||
seq2  ACTATCTTCATGATGTTTTTCTTTCAGGAAACAGAACTACTGAGGGCTGC  241

seq1  TTGTGAATGACAAACTTGTTATAGGGTATGAGTGTTGTCAGG-AATTTGA  296
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTGTGAATGACAAACTTGTTATAGGGTATGAGTGTTGTCAGGAAATTTGA  291

seq1  AACTCATTAAATTGCTTCCCTAAGTATTGAAGAGGTTTTTAATTCACTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATTAAATTGCTTCCCTAAGTATTGAAGAGGTTTTTAATTCACTCT  341

seq1  TCCAATTTGTTATTGTGCTGTGTCATCCTATCCAGCACATTTGGGTGACG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTTGTTATTGTGCTGTGTCATCCTATCCAGCACATTTGGGTGACG  391

seq1  TGAGGATCAGTGATGGAGCAAATGTGATTCTGTTTCAGAACATCTTCTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATCAGTGATGGAGCAAATGTGATTCTGTTTCAGAACATCTTCTTC  441

seq1  TTCCTTTGACTGGTTTCAACTTTCTTTGAGTAAGCAAAAACCATAAGCTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGACTGGTTTCAACTTTCTTTGAGTAAGCAAAAACCATAAGCTC  491

seq1  AATAGCTCTCTGTGTTTCCAACTCATTATAATGAATTATCCACTTACAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTCTCTGTGTTTCCAACTCATTATAATGAATTATCCACTTACAGG  541

seq1  GAAATGTGGGGACCAATGACTTATATATGAGTCCAAAAGATGATATTTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGGGGACCAATGACTTATATATGAGTCCAAAAGATGATATTTCA  591

seq1  CTTCTATGTCGGCTTAAAACTTCCTACAGTGGACACTGAGTGGACAGAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATGTCGGCTTAAAACTTCCTACAGTGGACACTGAGTGGACAGAAG  641

seq1  GCAAATGTTAAACCAATAACTTCATTTTTTATTAATTATTGAACAATGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGTTAAACCAATAACTTCATTTTTTATTAATTATTGAACAATGAA  691

seq1  TAATTCTCATTTTCATCATTAATCTTAGAATTCTTTATTCTAGGCCTTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTCATTTTCATCATTAATCTTAGAATTCTTTATTCTAGGCCTTTT  741

seq1  AATTAAGAAGGTAACATTAGTTTATGTACCATGTGGTGCTGGATTAATTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGAAGGTAACATTAGTTTATGTACCATGTGGTGCTGGATTAATTT  791

seq1  TTTTAAGAAGTGGTATATTTAAACATTCTTCTAGGATGGGGCTATATTTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGAAGTGGTATATTTAAACATTCTTCTAGGATGGGGCTATATTTA  841

seq1  GACTTCCTGTTATTGTAAACATGAAAACTGTAATTTCTAGAATATTTTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCTGTTATTGTAAACATGAAAACTGTAATTTCTAGAATATTTTGA  891

seq1  TGCAAGCATTACCAGTTATTTTGCATTTGGTTGTATGAAGAGTGTAATGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCATTACCAGTTATTTTGCATTTGGTTGTATGAAGAGTGTAATGA  941

seq1  TTTTTTATTGTAGATTACAACATTGTGCTTGTCATTTTACTAATACTTCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTGTAGATTACAACATTGTGCTTGTCATTTTACTAATACTTCA  991

seq1  TTGAACTGCCAAGAATTTCCAAATGACTTTATTCTACTGTGGGGTGATTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTGCCAAGAATTTCCAAATGACTTTATTCTACTGTGGGGTGATTT  1041

seq1  TAAGTTCCATAACTTATGTGTTAGGAAGTTATTGACTTTATTGCTGGATA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCCATAACTTATGTGTTAGGAAGTTATTGACTTTATTGCTGGATA  1091

seq1  GAAGAACTTTGTGAGGGCTGGAGTCGAGGGAGAGGCCCAGAGCTCTAAAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACTTTGTGAGGGCTGGAGTCGAGGGAGAGGCCCAGAGCTCTAAAG  1141

seq1  AATTC  1151
      |||||
seq2  AATTC  1146

seq1: chr17_20864249_20865299
seq2: B6Ng01-125P13.g_69_1102

seq1  GAATTCAATTGTGCTTGAGCAGTTGGAGACCATGATACCTTCAGTTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGTGCTTGAGCAGTTGGAGACCATGATACCTTCAGTTGAAT  50

seq1  AGATACACATGGGATGCTCACGTAGTTATGGAAGTACAGATACACTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACACATGGGATGCTCACGTAGTTATGGAAGTACAGATACACTAAAT  100

seq1  CAGTCTATGTGGATAGCTTAAAAGAATCCCTAATCAGTAAACTCTAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTATGTGGATAGCTTAAAAGAATCCCTAATCAGTAAACTCTAGAAA  150

seq1  TATCTACCCAAGAATAGATCCTCAGTTTCGACCAAAGGCTTTCTTTACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACCCAAGAATAGATCCTCAGTTTCGACCAAAGGCTTTCTTTACTA  200

seq1  CTGCTTTCATGCAGGTCATTTGATATTCTTATATCACTAATTGTAGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCATGCAGGTCATTTGATATTCTTATATCACTAATTGTAGTGAT  250

seq1  GGGCCTCTGAAAAATTAGGTCCCACATAATTAGATTAGTTGCTATCCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCTGAAAAATTAGGTCCCACATAATTAGATTAGTTGCTATCCTAT  300

seq1  CTGACCTCAAAGAAGAAAAGTGAATCAATAGCAATCTTTGGAACCACTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCAAAGAAGAAAAGTGAATCAATAGCAATCTTTGGAACCACTGC  350

seq1  ACATTCTGTCTGACATGAAGTTCCTCATACTTGACCTATTATCACCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGTCTGACATGAAGTTCCTCATACTTGACCTATTATCACCTGAT  400

seq1  GCAGGTTCAATAGCAGCTTCCCAAGATATTCTGGTGTAATCTTTTCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTCAATAGCAGCTTCCCAAGATATTCTGGTGTAATCTTTTCATTA  450

seq1  TTTATGGTGTAATGTTTTCTGAAGGAACTTGAATATTGAATAAAATCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTGTAATGTTTTCTGAAGGAACTTGAATATTGAATAAAATCTGT  500

seq1  CTCTCTTCAGTGCTTTTCATCTCAGAGACCATTGTTCTACATTGTAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCAGTGCTTTTCATCTCAGAGACCATTGTTCTACATTGTAGTTA  550

seq1  TTCAGATTTAAAATGGTTTAAATTTTATCTTCAAGGAACCTTTGTAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTTAAAATGGTTTAAATTTTATCTTCAAGGAACCTTTGTAATAC  600

seq1  AATATGAATATGTTTTTATTCAGAGATATATTTTATTCATATTTTGTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAATATGTTTTTATTCAGAGATATATTTTATTCATATTTTGTCCT  650

seq1  CATTTGACTTATCATTTTACTTCTTGTAATTTGGTATTCTATAGAACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGACTTATCATTTTACTTCTTGTAATTTGGTATTCTATAGAACACA  700

seq1  GTGTTTCATCTGAAATCCAATTTGTTGGTTTTCTCTCTTAGGTTGAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCATCTGAAATCCAATTTGTTGGTTTTCTCTCTTAGGTTGAATGA  750

seq1  AATGATACATATGTGAAATCTTCAGTGAATGTAAACTTATAAGACAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATACATATGTGAAATCTTCAGTGAATGTAAACTTATAAGACAGGCA  800

seq1  AAATTAAACATGCAGGAGAAATATTCTGTAACCTATGAATGTGAAATATC  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAATTAAACATGCAGGAG-AATATTCTGTAACCTATGAATGTGAAATATC  849

seq1  CCATGTGTGAGTCTTGAAACTCTGGACCTTTCTACATAACAACTTTTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTGAGTCTTGAAACTCTGGACCTTTCTACATAACAACTTTTATG  899

seq1  ACATAAAATTGTCATCCCACACAATCATATGCCTAGATTCCACATGTCAT  950
      |||| |||||||||||||||||||||||||||||||||  ||||||||||
seq2  ACAT-AAATTGTCATCCCACACAATCATATGCCTAGAT--CACATGTCAT  946

seq1  AGAGATTACAAAATGTTGAAAATAGTATTATTGTACTAATGCCTCTTGAC  1000
      ||||||   | |||| |||||||||||||| |||||| ||| ||| ||||
seq2  AGAGAT---ACAATG-TGAAAATAGTATTA-TGTACT-ATG-CTC-TGAC  988

seq1  TATTTAATAATGCCATATTTTACAATATCTATTAATCTTTCTAAAATGAG  1050
      ||||  ||||||||||| ||||| ||||||||| ||||||   |||||||
seq2  TATT--ATAATGCCATA-TTTAC-ATATCTATT-ATCTTTTCTAAATGAG  1033

seq1  T  1051
      |
seq2  T  1034