BAC Information

Click to search

BAC

Clone NameB6Ng01-126A13
Chromosome17 (Build37)
Map Location 90,389,987 - 90,391,124
singlet/doubletsinglet
Overlap genenone
Upstream geneFshr, LOC100043904, LOC100043906
Downstream geneNrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126A13.bB6Ng01-126A13.g
ACCDH928508DH928509
length1,130752
definitionDH928508|Mus musculus domesticus DNA, BAC clone: B6Ng01-126A13, 5' end.DH928509|Mus musculus domesticus DNA, BAC clone: B6Ng01-126A13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgctgcacaatatttctgaaatgctgtaagtagcatctgcatca
gaatgtttaccaaatgctaattcttaaattccaccaaactacttacatca
cattctcatttgcaaagaatgatgctagagacttaccctttttcagtgaa
aagagtattcctttctgcattcttgacaacctggctaagtacatctccaa
agagctggaaggaattccaagtgtcgtcattagtcactgacaagaaatgt
gtaagggtgtgtaaggtcttgtgttatctgggaaccaggtcactagaaac
attcttaacagtaatacagaatttggactttgatgaatgtccaaaatttc
agaggcaccaaaggagtaacgtgcacgccaaaagcaatttcccatcgcct
tttcctactgattgagttaattggataaaaagggactcagtgttccataa
gaagcaaataaataagattctaattataacttttcttaataggctgatta
gacataaattttgtggtccattcatgtggaacagtcaggaatgggtggat
cttcacagtcacaatcttccttaattcttattaatggctacaattggaaa
cacagccacagcttaggagctcagccctacagtttctacatttatctgct
cacccaggaagtgaggtcgaccacccagacagagacaggtagagagcaca
atgttaaatttctcacagctatttcctattagtgctgacaagtagaaaag
gaagggtgggggtggtaaggttgaaatgaaaattaaaggacatgatttgc
caaggcctagtagccatatctataatgcctttacttacgaacatgaggca
gagggtccagagtttcaggacatcctgggctacacacatagcaatgcaag
caagaacaaaagataaatttagttccccaatagtttagatatggttcctt
tcctgtatccaaagccactcgtagaaaataatactggaaaagaaagccaa
accattctacctttctcaacaaagttggaaatagatttggtcatttctag
gtcacatggtggctgctttcagaagtcaataaactagacattatttacta
gttattgactgaataaaatgaattagaaag

gaattcacgcagttgaatccttctcaacagtctgttttacgggaaccttt
atgaccgtgacccgcagttctggttccggaatgaggaatcttccttgcgc
cggtgatggttaactcccgtccccagtttttcttgtcccgggttttttct
tcccggattttctcgtcccggattttctcgtcccgggttctcggcaccaa
ctcttacacgcgttctcacgaccggccaggaaagacaccacaaaccagaa
tcttctgcggcaaaactttattgcttacatcttcaggagcaagagtgcaa
aactcaaacccaaaaaacgaaagcgaaaccccgtccctatttaggagagt
tatccttcgcctaggacgtatcactccctgattggctgcagcccatggcc
gagttgttgccacggggaaggcagagtacatggggtggagaaataccctt
ggcacatgcgcagattatttgtttaccacttagaacacagctgtcagcgc
catcttgtgacggcgaatgtgggggcggcttcccacactcaaggagctaa
agggatctgcaaccctataggtggaacaacattatgaactaaccagtacc
ctggagctcttgactctagctgcatatgtatcaaaagatggcctagtcag
ccatcactggaaagataggcccattggacacacaaactttatatgcccca
gtacaggggaacgccagggtcaacaaaatgggaatgggtgggtagggaag
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_90389987_90391124
seq2: B6Ng01-126A13.b_47_1176

seq1  GAATTCTGCTGCACAATATTTCTGAAATGCTGTAAGTAGCATCTGCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTGCACAATATTTCTGAAATGCTGTAAGTAGCATCTGCATCA  50

seq1  GAATGTTTACCAAATGCTAATTCTTAAATTCCACCAAACTACTTACATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTACCAAATGCTAATTCTTAAATTCCACCAAACTACTTACATCA  100

seq1  CATTCTCATTTGCAAAGAATGATGCTAGAGACTTACCCTTTTTCAGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCATTTGCAAAGAATGATGCTAGAGACTTACCCTTTTTCAGTGAA  150

seq1  AAGAGTATTCCTTTCTGCATTCTTGACAACCTGGCTAAGTACATCTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTATTCCTTTCTGCATTCTTGACAACCTGGCTAAGTACATCTCCAA  200

seq1  AGAGCTGGAAGGAATTCCAAGTGTCGTCATTAGTCACTGACAAGAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGAAGGAATTCCAAGTGTCGTCATTAGTCACTGACAAGAAATGT  250

seq1  GTAAGGGTGTGTAAGGTCTTGTGTTATCTGGGAACCAGGTCACTAGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGTGTGTAAGGTCTTGTGTTATCTGGGAACCAGGTCACTAGAAAC  300

seq1  ATTCTTAACAGTAATACAGAATTTGGACTTTGATGAATGTCCAAAATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAACAGTAATACAGAATTTGGACTTTGATGAATGTCCAAAATTTC  350

seq1  AGAGGCACCAAAGGAGTAACGTGCACGCCAAAAGCAATTTCCCATCGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCACCAAAGGAGTAACGTGCACGCCAAAAGCAATTTCCCATCGCCT  400

seq1  TTTCCTACTGATTGAGTTAATTGGATAAAAAGGGACTCAGTGTTCCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTACTGATTGAGTTAATTGGATAAAAAGGGACTCAGTGTTCCATAA  450

seq1  GAAGCAAATAAATAAGATTCTAATTATAACTTTTCTTAATAGGCTGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAATAAATAAGATTCTAATTATAACTTTTCTTAATAGGCTGATTA  500

seq1  GACATAAATTTTGTGGTCCATTCATGTGGAACAGTCAGGAATGGGTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAAATTTTGTGGTCCATTCATGTGGAACAGTCAGGAATGGGTGGAT  550

seq1  CTTCACAGTCACAATCTTCCTTAATTCTTATTAATGGCTACAATTGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAGTCACAATCTTCCTTAATTCTTATTAATGGCTACAATTGGAAA  600

seq1  CACAGCCACAGCTTAGGAGCTCAGCCCTACAGTTTCTACATTTATCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCACAGCTTAGGAGCTCAGCCCTACAGTTTCTACATTTATCTGCT  650

seq1  CACCCAGGAAGTGAGGTCGACCACCCAGACAGAGACAGGTAGAGAGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGGAAGTGAGGTCGACCACCCAGACAGAGACAGGTAGAGAGCACA  700

seq1  ATGTTAAATTTCTCACAGCTATTTCCTATTAGTGCTGACAAGTAGAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAATTTCTCACAGCTATTTCCTATTAGTGCTGACAAGTAGAAAAG  750

seq1  GAAGGGTGGGGGTGGTAAGGTTGAAATGAAAATTAAAGGACATGATTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTGGGGGTGGTAAGGTTGAAATGAAAATTAAAGGACATGATTTGC  800

seq1  CAAGGCCTAGTAGCCATATCTATAATGCC-TTACTTACGAACATGAGGCA  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAAGGCCTAGTAGCCATATCTATAATGCCTTTACTTACGAACATGAGGCA  850

seq1  GAGGGGTCCAGAGTTTCAGGACATCCTGGGCTACACACATAGCAATGCAA  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GA-GGGTCCAGAGTTTCAGGACATCCTGGGCTACACACATAGCAATGCAA  899

seq1  GCAAGAACAAAAGATAAATTTAGTTCCCCAATAGTTTAGATATGGTTCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAACAAAAGATAAATTTAGTTCCCCAATAGTTTAGATATGGTTCCT  949

seq1  TTCCTGTATTCCAAAGCCACTCGTAGAAAATAATACTGGAAAAGAAAGCC  999
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTA-TCCAAAGCCACTCGTAGAAAATAATACTGGAAAAGAAAGCC  998

seq1  AAAACCATTTCTACCTTTCTCAACAAAGTTGGAAATAGGATTTTGGTCAT  1049
       |||||| ||||||||||||||||||||||||||||||   |||||||||
seq2  -AAACCA-TTCTACCTTTCTCAACAAAGTTGGAAATAG--ATTTGGTCAT  1044

seq1  TTCTAGGTCAATATGTGGCTTCTTTCAGACGTCAATAAACTAGACATTTA  1099
      ||||||||||    |||||| |||||||| |||||||||||||||| |||
seq2  TTCTAGGTCACATGGTGGCTGCTTTCAGAAGTCAATAAACTAGACA-TTA  1093

seq1  TTTACTATTTATTTAACTGATTAAAATAGAATAAGAAAG  1138
      ||||||| ||| || ||||| |||||| |||| ||||||
seq2  TTTACTAGTTA-TTGACTGAATAAAAT-GAATTAGAAAG  1130


| Home | SequenceCutter | Blast | Download |