BAC Information

Click to search

BAC

Clone NameB6Ng01-126P11
Chromosome17 (Build37)
Map Location 20,171,543 - 20,319,360
singlet/doubletdoublet
Overlap geneV2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6
Upstream geneEG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664
Downstream geneEG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126P11.bB6Ng01-126P11.g
ACCDH929204DH929205
length9641,043
definitionDH929204|Mus musculus domesticus DNA, BAC clone: B6Ng01-126P11, 5' end.DH929205|Mus musculus domesticus DNA, BAC clone: B6Ng01-126P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,171,543 - 20,172,503)(20,318,305 - 20,319,360)
sequence
gaattctcagctcctctacttcatgccttacaggatgattctatgctcct
accttgaagataattgactggacatctgaactggtaagccaggcccaatt
aaatgttgtcatatagtagtctttgttatggtgtttgctcacagcagtaa
aaaaactaactaagacagtggattacacaatatttctatatttcccaaaa
tatagttgataaccaaagtgtcaattttattacattaataatattgaact
gatattttaacatataaaagaaactataaacttactgttcaactttcttt
cagcaataatttcaaaattacactgtttagcatttctttgagttgcatac
tgttgtacaatataattaacaaacactggccagatttgcccttagtgttt
gaatggatctttttatacatacacaggatatattgaaaaattcattttag
atattcatatgttttgttttggttgtgtgtgtgtgtgtgtgtttataatg
atttcacgtgggtgaaatattgatagtaaaatttattattattgaaagtt
tgtattaaaagaagagagtgtggacactttttaacagtcagaagcctcca
tattgttgtttgaaaatttgtgaagaattgtgttggaattttgatgggga
ttacattgaaaatgaacatttgcttttggttagatagcctttttgcacta
tttttaattccactgatctacaaccgaggaagatgttttccactttctta
tatcctcctcaaattctgtctttagaaacatgatatttgtgtcatacaga
tttttcacttacttggttaaagctacatgaagttgatgttatttgtgtca
ttgtgaaaagtattttttttcacaaccacattgaatctcaagagaagaag
atctaagtatggacattttgggttcttttgataggaaatgaattaacatt
tggaaggaattaca
gaattccagtcgtcctttacgtgtcctcactgctgtagcaatttctttct
ttgtttgttggttcccttttcaattgatttttcttttaggcaatattggg
aacaaggagacacagaataatattgacacgtgggtgaacacagcaagcac
tctggcctccttcaatagttgcctcaacccaatactctatgttttcctag
gtcagcaattcagagagagactgatctactccctatcagctagtctggag
agggccctgagggaggactcagccctgaacagtgacaaaaccagaaactt
gtcttcacaaagactctgagccataggatgtgacactcatgatggcatgg
aaatgtttcctctgctgtcctattctcacttcccatctcatcctactttg
cataagatttttgaagtctagaagaaatacttcatcgtcctctgatttgg
aagaaaaataaaaatgagaaaaagatatcagtcctattttggtagatttt
agctgagtccagagcatgggctattactgaggtggtacaagagtatgtga
cacaaaacaagcctattgttattgcatcagttgagttgggaaaacatcct
tattgtatgtggtaccaatccttaggcaaagaattttgacattgtatctg
actctgataacattgtttacaatgatttctgtttttgagtgtggagatat
ttgacaaactatttcaattttctgcttccctaatttccctacattataga
ctatactatattactagtattttaaacaccctttattttttatgtacatt
tgtaagttcattttattctttcatagcatgaaagtaatctgggaattaag
tcatttttgagactgtgtcttgctgtgacaaattctaccttgctttgttg
attatactttttcccatttctaatggtctttgcagaagggtaaacccttt
agacctatgtgatgagaaaaaattaaaaaacttgatggtttagagatgag
attgtgaccaattattcaaattaatgagaatatcatgggttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_20171543_20172503
seq2: B6Ng01-126P11.b_50_1013

seq1  GAATTCTCAGCTCCTCTACTTCATGCCTTACAGGATGATTCTATGCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTCCTCTACTTCATGCCTTACAGGATGATTCTATGCTCCT  50

seq1  ACCTTGAAGATAATTGACTGGACATCTGAACTGGTAAGCCAGGCCCAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAAGATAATTGACTGGACATCTGAACTGGTAAGCCAGGCCCAATT  100

seq1  AAATGTTGTCATATAGTAGTCTTTGTTATGGTGTTTGCTCACAGCAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGTCATATAGTAGTCTTTGTTATGGTGTTTGCTCACAGCAGTAA  150

seq1  AAAAACTAACTAAGACAGTGGATTACACAATATTTCTATATTTCCCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAACTAAGACAGTGGATTACACAATATTTCTATATTTCCCAAAA  200

seq1  TATAGTTGATAACCAAAGTGTCAATTTTATTACATTAATAATATTGAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTGATAACCAAAGTGTCAATTTTATTACATTAATAATATTGAACT  250

seq1  GATATTTTAACATATAAAAGAAACTATAAACTTACTGTTCAACTTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTAACATATAAAAGAAACTATAAACTTACTGTTCAACTTTCTTT  300

seq1  CAGCAATAATTTCAAAATTACACTGTTTAGCATTTCTTTGAGTTGCATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATAATTTCAAAATTACACTGTTTAGCATTTCTTTGAGTTGCATAC  350

seq1  TGTTGTACAATATAATTAACAAACACTGGCCAGATTTGCCCTTAGTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTACAATATAATTAACAAACACTGGCCAGATTTGCCCTTAGTGTTT  400

seq1  GAATGGATCTTTTTATACATACACAGGATATATTGAAAAATTCATTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGATCTTTTTATACATACACAGGATATATTGAAAAATTCATTTTAG  450

seq1  ATATTCATATGTTTTGTTTTGGTTGTGTGTGTGTGTGTGTGTTTATAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATATGTTTTGTTTTGGTTGTGTGTGTGTGTGTGTGTTTATAATG  500

seq1  ATTTCACGTGGGTGAAATATTGATAGTAAAATTTATTATTATTGAAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACGTGGGTGAAATATTGATAGTAAAATTTATTATTATTGAAAGTT  550

seq1  TGTATTAAAAGAAGAGAGTGTGGACACTTTTTAACAGTCAGAAGCCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAAAAGAAGAGAGTGTGGACACTTTTTAACAGTCAGAAGCCTCCA  600

seq1  TATTGTTGTTTGAAAATTTGTGAAGAATTGTGTTGGAATTTTGATGGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTGTTTGAAAATTTGTGAAGAATTGTGTTGGAATTTTGATGGGGA  650

seq1  TTACATTGAAAATGAACA-TTGCTTTTGGTTAGATAGCC-TTTTGCACTA  698
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  TTACATTGAAAATGAACATTTGCTTTTGGTTAGATAGCCTTTTTGCACTA  700

seq1  -TTTTAATTCCACTGATCTACAACCGAGGAAGATG-TTTCCACTTTCTTA  746
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTTTAATTCCACTGATCTACAACCGAGGAAGATGTTTTCCACTTTCTTA  750

seq1  TATCCTCCTCAAATTCTGTCTTTAGAAACATGATATTTGTGTCATACAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCCTCAAATTCTGTCTTTAGAAACATGATATTTGTGTCATACAGA  800

seq1  TTTTTCACTTACTTGGTTAAAGCTACATGAAGTTGATGTTATTTGTGTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTTTCACTTACTTGGTTAAAGCTACATGAAGTTGATGTTATTTGTG-TC  849

seq1  ATTGTGAACAGTATTTTTTTTCACAAACCACA-TGAATCTCAAGAAGAAG  895
      |||||||| ||||||||||||||| ||||||| ||||||||||| |||||
seq2  ATTGTGAAAAGTATTTTTTTTCAC-AACCACATTGAATCTCAAG-AGAAG  897

seq1  AAAGACCAAAGTATGGACATTTT-GGCTCTTTGAAGAGGAAAGAAATTAC  944
       |||| | ||||||||||||||| || |||||  | ||||||  ||||| 
seq2  -AAGATCTAAGTATGGACATTTTGGGTTCTTTTGATAGGAAATGAATTAA  946

seq1  CA-ATGGAAGGAATTACA  961
      ||  ||||||||||||||
seq2  CATTTGGAAGGAATTACA  964

seq1: chr17_20318305_20319360
seq2: B6Ng01-126P11.g_69_1111 (reverse)

seq1  TAAACCCATGATATTTCCTCCATCTAATTTGATATATTGTCCACTATCTT  50
      |||||||||||||||  || ||| ||||||||   ||||  ||| ||| |
seq2  TAAACCCATGATATT--CT-CAT-TAATTTGAATAATTGGTCACAATC-T  45

seq1  CATCTTCTAAACCATTCAAAGTTTTTTTTAATTTTTTCTTCATCACATAG  100
      |||| ||||||||| ||||    ||||||||||||||| |||||||||||
seq2  CATC-TCTAAACCA-TCAA---GTTTTTTAATTTTTTC-TCATCACATAG  89

seq1  TTCTAAAGGGTTTACCCTTCCTGCAAAGACCATTAGAAATGGGGAAAAAG  150
       |||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  GTCTAAAGGGTTTACCCTT-CTGCAAAGACCATTAGAAAT-GGGAAAAAG  137

seq1  TATATTCAACAAAGCAAGGTAG-ATTTGTCACAGCAAGACACAGTCTC-A  198
      |||| ||||||||||||||||| ||||||||||||||||||||||||| |
seq2  TATAATCAACAAAGCAAGGTAGAATTTGTCACAGCAAGACACAGTCTCAA  187

seq1  AAATGACTTTATT-CCAGATTACTTTCATGCTATGAAAGTATAAAATGAA  247
      ||||||||| ||| ||||||||||||||||||||||||| ||||||||||
seq2  AAATGACTTAATTCCCAGATTACTTTCATGCTATGAAAGAATAAAATGAA  237

seq1  CTTACAAATGTAACATAAAAAATAAAGGGTGTTTTAAAATACTAGTTATA  297
      ||||||||||| ||||||||||||||||||| |||||||||||||| |||
seq2  CTTACAAATGT-ACATAAAAAATAAAGGGTG-TTTAAAATACTAGTAATA  285

seq1  TAGTATAGTCTATAATGTAGGGAAATTAGGGAAGCAGAAAATTGAAATAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATAGTCTATAATGTAGGGAAATTAGGGAAGCAGAAAATTGAAATAG  335

seq1  TTTGTCAAATTATCTCCACACTCAAAAACAGAAATCATTGTAAACAATGT  397
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAAA-TATCTCCACACTCAAAAACAGAAATCATTGTAAACAATGT  384

seq1  TATCAGAGTCAGATACAATGTCAAAATTCTTTGCCTAAGGATTGGTACCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAGTCAGATACAATGTCAAAATTCTTTGCCTAAGGATTGGTACCA  434

seq1  CATACAATAAGGATGTTTTCCCAACTCAACTGATGCAATAACAATAGGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAATAAGGATGTTTTCCCAACTCAACTGATGCAATAACAATAGGCT  484

seq1  TGTTTTGTGTCACATACTCTTGTACCACCTCAGTAATAGCCCATGCTCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTGTCACATACTCTTGTACCACCTCAGTAATAGCCCATGCTCTG  534

seq1  GACTCAGCTAAAATCTACCAAAATAGGACTGATATCTTTTTCTCATTTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGCTAAAATCTACCAAAATAGGACTGATATCTTTTTCTCATTTTT  584

seq1  ATTTTTCTTCCAAATCAGAGGACGATGAAGTATTTCTTCTAGACTTCAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTCCAAATCAGAGGACGATGAAGTATTTCTTCTAGACTTCAAA  634

seq1  AATCTTATGCAAAGTAGGATGAGATGGGAAGTGAGAATAGGACAGCAGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTATGCAAAGTAGGATGAGATGGGAAGTGAGAATAGGACAGCAGAG  684

seq1  GAAACATTTCCATGCCATCATGAGTGTCACATCCTATGGCTCAGAGTCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATTTCCATGCCATCATGAGTGTCACATCCTATGGCTCAGAGTCTT  734

seq1  TGTGAAGACAAGTTTCTGGTTTTGTCACTGTTCAGGGCTGAGTCCTCCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGACAAGTTTCTGGTTTTGTCACTGTTCAGGGCTGAGTCCTCCCT  784

seq1  CAGGGCCCTCTCCAGACTAGCTGATAGGGAGTAGATCAGTCTCTCTCTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCCTCTCCAGACTAGCTGATAGGGAGTAGATCAGTCTCTCTCTGA  834

seq1  ATTGCTGACCTAGGAAAACATAGAGTATTGGGTTGAGGCAACTATTGAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGACCTAGGAAAACATAGAGTATTGGGTTGAGGCAACTATTGAAG  884

seq1  GAGGCCAGAGTGCTTGCTGTGTTCACCCACGTGTCAATATTATTCTGTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGAGTGCTTGCTGTGTTCACCCACGTGTCAATATTATTCTGTGT  934

seq1  CTCCTTGTTCCCAATATTGCCTAAAAGAAAAATCAATTGAAAAGGGAACC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGTTCCCAATATTGCCTAAAAGAAAAATCAATTGAAAAGGGAACC  984

seq1  AACAGACAAAGAAAGAAATTGCTACAGCAGTGAGGACACGTAAAGGACGA  1047
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAGAAAGAAATTGCTACAGCAGTGAGGACACGTAAAGGACGA  1034

seq1  CTGGAATTC  1056
      |||||||||
seq2  CTGGAATTC  1043