BAC Information

Click to search

BAC

Clone NameB6Ng01-131N01
Chromosome17 (Build37)
Map Location 16,723,832 - 16,876,686
singlet/doubletdoublet
Overlap geneLOC100041407, LOC665072
Upstream geneLOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3, LOC100041383, LOC100041394, LOC213781
Downstream geneEG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297, Lnpep, EG665140, LOC100041519, EG626942
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131N01.bB6Ng01-131N01.g
ACCDH932778DH932779
length1,1841,145
definitionDH932778|Mus musculus domesticus DNA, BAC clone: B6Ng01-131N01, 5' end.DH932779|Mus musculus domesticus DNA, BAC clone: B6Ng01-131N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,875,486 - 16,876,686)(16,723,832 - 16,725,008)
sequence
gaattcatttaagtaccactcctgtaatgtctggaagacactattttctt
gaagtcatacattaccctttgcttttataatctttgttcctcctcatcta
cagagatcctgagccttgagaaaaggtatttaggaggtgggggaatctgg
gacaagttgaagaaggaaaaggaatttgatcaaaatatatgaaaaaattt
cataaaaaacattaagatttaagaaatactgaaactatccttatttatag
tgataatagcacataattatttattaattaatatgttatataatgaattt
ctaaactttacattatttactgtggtcttgatgaatctcctatttgaaat
aatttcataagttcagaggtttaaatattaactaagctgtttagcttcaa
aagtgagactgtgatttcttttctactaaaaatgattatgtatatgacaa
aacatacatatatgtcatatatcatatatctaattcagaagtgacagcac
taggaagtggggccttttcaaaggcaattatgtcaccggacagagtctta
tgaatggattagtgcccttatgggcccattgaaacttcctatcaaggaga
gacatagctagagtctctcacctgtgaactgtaaaacagctctaaaagat
gaaaactttgcattcttatgtttggacatataagggtgaagtgagaagta
ggcctgcttttcatataccacccagtttataatatggtgcttaccatctc
aagaggactaagacaagagttagtaccagaattcctaaagtcttctcatg
accacaaagcaatcaaacacttttctaattaagttggaataactttgaag
agaataatttttttaaatttatgctggcaaaattttacatatatatatat
ttctgaaatgcgcaaattcatatctttagccactttggtttgcatggtgt
gatccaaaatatttaaaaacagtttaatattagttatatttgtgatttat
atgtgtatatacatatactatatgtaaataatcatcttatatatgtctca
taatgattgttggtataagcccaactgactgtttttttatgatcagtcat
taagtggtttcttagtagtcatcttggaaacaaaaaacctggacagttct
agagatctactctgctctcttagccaatgaagct
gaattcattgtgttgaaaatttaaaaatcaatttcacatgaattgttaca
ttagtttccaaagtttctaataaataattagtatacatttgatactgttg
ctaccctttaaaaggataagttagttaacttgtctgagcacatacctagg
aaggtgatagaagaaataaaattctactttgagtgttaactgtctctttc
tgtttctcttgctagtcatcaaagcaccttctgcgtttatagcttactct
ggaatatttgacagtaaaattcatgggtttaacctcactaacttgatgtt
gtaactatagtactaaatcaagaaacaagcatgattttacattgaagtct
ttttacaaaatataaatggtccttataaatactttcttctgcttccaaac
ttaagtcagaacagaagacttctaaaatagtaacaggaatggaaacctta
ttttgtttctcatttactacttgttagattgcctggaatattctcagaaa
gtcttattttcctaggaactccagagtatcaagtaaattgcagttaagat
attataaagaacatttatatagacaatacaatttctacttaatttgaaat
agattattttaaaagtttcttatcttgtagcttcctgtaacccccgagtg
ctgggtactgatctactgacttcaagcatacaaatatcttgacttgtgta
aatgtcttaaatatagaaccaagcctgttactttttctaatacagcaacc
cttactgagcttttattctatgttagaaataagaacaaatgtgagaacat
gagaatgtgttatgacagcacagtacccagtatttccatgttaacgactt
tcctaaaattatcaatcagctacaaagtgtttctaaaggaactgcaaagg
aaacatccctgcatactcatcaatccttcacaaccacaaactcaaacaac
accctctagtaacaatcatttaataaccaaacccacacattgatctgtac
tctagccaatgttgagtacactacaaaaaaatcactgaatcaaactcttg
cttaaatagctataacagaagaagagactgggtaatccattaccctaaca
tataaaggccttttcttggcccttaaataagttgcacatatcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_16875486_16876686
seq2: B6Ng01-131N01.b_45_1228 (reverse)

seq1  AGCTTCCATTTTTGGCTAAGA-AGC--AGTAGATCTCTAGGAACCTGT-C  46
      ||||||     |||||||||| |||  |||||||||||||  | |||| |
seq2  AGCTTC----ATTGGCTAAGAGAGCAGAGTAGATCTCTAG--AACTGTCC  44

seq1  AGGTTTTTGGTT--CCAGATTGGAACTACTAAGACACCCAACCTTATGGA  94
      |||||||| |||  | ||||    |||||||||| |||    ||||  ||
seq2  AGGTTTTTTGTTTCCAAGAT---GACTACTAAGAAACC---ACTTAATGA  88

seq1  CTGATCCATAAAAGACAGTCAGTTTGGGGCTATACCAACAAATCAATTAT  144
      ||||||   |||| |||||||| |||||  ||||||||| |||| |||||
seq2  CTGATCATAAAAAAACAGTCAG-TTGGGCTTATACCAAC-AATC-ATTAT  135

seq1  GAGACATTAATATTATAGATGATTATTTTACATATAGTATATGTATATAC  194
      |||||||  |||    ||||||||| ||||||||||||||||||||||||
seq2  GAGACATATATA----AGATGATTA-TTTACATATAGTATATGTATATAC  180

seq1  ACATATAAATCACAAATATAAACTAATATTAAAACTGTTTTTAAATATTT  244
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  ACATATAAATCACAAATAT-AACTAATATT-AAACTGTTTTTAAATATTT  228

seq1  TGGATCACAACCATGCAAACCAAAGTGGCTAAAGATATGAATTTGCGCAT  294
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCAC-ACCATGCAAACCAAAGTGGCTAAAGATATGAATTTGCGCAT  277

seq1  TTCAGAAATATATATATATGTAAAATTTTGCCAGCATAAATTTAAAAAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAATATATATATATGTAAAATTTTGCCAGCATAAATTTAAAAAAA  327

seq1  TTATTCTCTTCAAAGTTATTCCAACTTAATTAGAAAAGTGTTTGATTGCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCTTCAAAGTTATTCCAACTTAATTAGAAAAGTGTTTGATTGCT  377

seq1  TTGTGGTCATGAGAAGACTTTAGGAATTCTGGTACTAACTCTTGTCTTAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTCATGAGAAGACTTTAGGAATTCTGGTACTAACTCTTGTCTTAG  427

seq1  TCCTCTTGAGATGGTAAGCACCATATTATAAACTGGGTGGTATATGAAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTGAGATGGTAAGCACCATATTATAAACTGGGTGGTATATGAAAA  477

seq1  GCAGGCCTACTTCTCACTTCACCCTTATATGTCCAAACATAAGAATGCAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCCTACTTCTCACTTCACCCTTATATGTCCAAACATAAGAATGCAA  527

seq1  AGTTTTCATCTTTTAGAGCTGTTTTACAGTTCACAGGTGAGAGACTCTAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCATCTTTTAGAGCTGTTTTACAGTTCACAGGTGAGAGACTCTAG  577

seq1  CTATGTCTCTCCTTGATAGGAAGTTTCAATGGGCCCATAAGGGCACTAAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCTCTCCTTGATAGGAAGTTTCAATGGGCCCATAAGGGCACTAAT  627

seq1  CCATTCATAAGACTCTGTCCGGTGACATAATTGCCTTTGAAAAGGCCCCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCATAAGACTCTGTCCGGTGACATAATTGCCTTTGAAAAGGCCCCA  677

seq1  CTTCCTAGTGCTGTCACTTCTGAATTAGATATATGATATATGACATATAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAGTGCTGTCACTTCTGAATTAGATATATGATATATGACATATAT  727

seq1  GTATGTTTTGTCATATACATAATCATTTTTAGTAGAAAAGAAATCACAGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTTGTCATATACATAATCATTTTTAGTAGAAAAGAAATCACAGT  777

seq1  CTCACTTTTGAAGCTAAACAGCTTAGTTAATATTTAAACCTCTGAACTTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTTTGAAGCTAAACAGCTTAGTTAATATTTAAACCTCTGAACTTA  827

seq1  TGAAATTATTTCAAATAGGAGATTCATCAAGACCACAGTAAATAATGTAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTATTTCAAATAGGAGATTCATCAAGACCACAGTAAATAATGTAA  877

seq1  AGTTTAGAAATTCATTATATAACATATTAATTAATAAATAATTATGTGCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGAAATTCATTATATAACATATTAATTAATAAATAATTATGTGCT  927

seq1  ATTATCACTATAAATAAGGATAGTTTCAGTATTTCTTAAATCTTAATGTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCACTATAAATAAGGATAGTTTCAGTATTTCTTAAATCTTAATGTT  977

seq1  TTTTATGAAATTTTTTCATATATTTTGATCAAATTCCTTTTCCTTCTTCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGAAATTTTTTCATATATTTTGATCAAATTCCTTTTCCTTCTTCA  1027

seq1  ACTTGTCCCAGATTCCCCCACCTCCTAAATACCTTTTCTCAAGGCTCAGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCCCAGATTCCCCCACCTCCTAAATACCTTTTCTCAAGGCTCAGG  1077

seq1  ATCTCTGTAGATGAGGAGGAACAAAGATTATAAAAGCAAAGGGTAATGTA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTAGATGAGGAGGAACAAAGATTATAAAAGCAAAGGGTAATGTA  1127

seq1  TGACTTCAAGAAAATAGTGTCTTCCAGACATTACAGGAGTGGTACTTAAA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCAAGAAAATAGTGTCTTCCAGACATTACAGGAGTGGTACTTAAA  1177

seq1  TGAATTC  1201
      |||||||
seq2  TGAATTC  1184

seq1: chr17_16723832_16725008
seq2: B6Ng01-131N01.g_67_1211

seq1  GAATTCATTGTGTTGAAAATTTAAAAATCAATTTCACATGAATTGTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGTTGAAAATTTAAAAATCAATTTCACATGAATTGTTACA  50

seq1  TTAGTTTCCAAAGTTTCTAATAAATAATTAGTATACATTTGATACTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTCCAAAGTTTCTAATAAATAATTAGTATACATTTGATACTGTTG  100

seq1  CTACCCTTTAAAAGGATAAGTTAGTTAACTTGTCTGAGCACATACCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTTTAAAAGGATAAGTTAGTTAACTTGTCTGAGCACATACCTAGG  150

seq1  AAGGTGATAGAAGAAATAAAATTCTACTTTGAGTGTTAACTGTCTCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGATAGAAGAAATAAAATTCTACTTTGAGTGTTAACTGTCTCTTTC  200

seq1  TGTTTCTCTTGCTAGTCATCAAAGCACCTTCTGCGTTTATAGCTTACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCTTGCTAGTCATCAAAGCACCTTCTGCGTTTATAGCTTACTCT  250

seq1  GGAATATTTGACAGTAAAATTCATGGGTTTAACCTCACTAACTTGATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTTGACAGTAAAATTCATGGGTTTAACCTCACTAACTTGATGTT  300

seq1  GTAACTATAGTACTAAATCAAGAAACAAGCATGATTTTACATTGAAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTATAGTACTAAATCAAGAAACAAGCATGATTTTACATTGAAGTCT  350

seq1  TTTTACAAAATATAAATGGTCCTTATAAATACTTTCTTCTGCTTCCAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAAATATAAATGGTCCTTATAAATACTTTCTTCTGCTTCCAAAC  400

seq1  TTAAGTCAGAACAGAAGACTTCTAAAATAGTAACAGGAATGGAAACCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCAGAACAGAAGACTTCTAAAATAGTAACAGGAATGGAAACCTTA  450

seq1  TTTTGTTTCTCATTTACTACTTGTTAGATTGCCTGGAATATTCTCAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTCTCATTTACTACTTGTTAGATTGCCTGGAATATTCTCAGAAA  500

seq1  GTCTTATTTTCCTAGGAACTCCAGAGTATCAAGTAAATTGCAGTTAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTTTCCTAGGAACTCCAGAGTATCAAGTAAATTGCAGTTAAGAT  550

seq1  ATTATAAAGAACATTTATATAGACAATACAATTTCTACTTAATTTGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAGAACATTTATATAGACAATACAATTTCTACTTAATTTGAAAT  600

seq1  AGATTATTTTAAAAGTTTCTTATCTTGTAGCTTCCTGTAACCCCCGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTTTAAAAGTTTCTTATCTTGTAGCTTCCTGTAACCCCCGAGTG  650

seq1  CTGGGTACTGATCTACTGACTTCAAGCATACAAATATCTTGACTTGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTACTGATCTACTGACTTCAAGCATACAAATATCTTGACTTGTGTA  700

seq1  AATGTCTTAAATATAGAACCAAGCCTGTTACTTTTTCTAATACAGCAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTAAATATAGAACCAAGCCTGTTACTTTTTCTAATACAGCAACC  750

seq1  CTTACTGAGCTTTTATTCTATGTTAGAAATAAGAACAAATGTGAGAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGAGCTTTTATTCTATGTTAGAAATAAGAACAAATGTGAGAACAT  800

seq1  GAGAATGTGTTATGACAGCACAGTACCCAGTATTTCCATGTTAACGACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGTGTTATGACAGCACAGTACCCAGTATTTCCATGTTAACGACTT  850

seq1  TCCTAAAATTATCAATCAGCTACAAAGTGTTTCTAAAGGAACTGCAAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAATTATCAATCAGCTACAAAGTGTTTCTAAAGGAACTGCAAAGG  900

seq1  AAACATCCCTGCATACTCATCAATCCTTCACAACCACAAACTCAAACAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAACATCCCTGCATACTCATCAATCCTTCACAACCACAAACTCAAAC-AA  949

seq1  CACCCTCTAGTAAACAAATCATTTAAATTAACCAAAACCCACACATTGAT  1000
      |||||||||||||   ||||||||||  ||||| ||||||||||||||||
seq2  CACCCTCTAGTAA--CAATCATTTAA--TAACC-AAACCCACACATTGAT  994

seq1  CTGTTACTCTAGCCAAATGTTGAGTAACACATACAAAAAAATCCAACTGA  1050
      ||| |||||||||| |||||||||| |||| ||||||||||||  |||||
seq2  CTG-TACTCTAGCC-AATGTTGAGT-ACAC-TACAAAAAAATC--ACTGA  1038

seq1  ATCAAAACTCTTTGCCTTAAATTAGCTAATAAACCAGGAAGAAGAGAACA  1100
      ||| ||||||||   |||||| ||||| ||||  || ||||||||||   
seq2  ATC-AAACTCTT--GCTTAAA-TAGCT-ATAA--CA-GAAGAAGAGA--C  1078

seq1  TGGGTAATCAAATAACCCTAACATATTAAAGGGGTCTTTATCTTTGCTCT  1150
      |||||||||  || ||||||||||| ||||||   | || |||| || ||
seq2  TGGGTAATC-CATTACCCTAACATA-TAAAGG---CCTTTTCTTGGCCCT  1123

seq1  TAAAAATAAAGTTGCCATCATATCTTC  1177
      ||||    |||||||   |||||||||
seq2  TAAA---TAAGTTGC--ACATATCTTC  1145