BAC Information

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BAC

Clone NameB6Ng01-132K16
Chromosome17 (Build37)
Map Location 36,600,397 - 36,601,544
singlet/doubletsinglet
Overlap genenone
Upstream geneH2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4
Downstream geneH2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132K16.bB6Ng01-132K16.g
ACCDH933411DH933412
length1,138741
definitionDH933411|Mus musculus domesticus DNA, BAC clone: B6Ng01-132K16, 5' end.DH933412|Mus musculus domesticus DNA, BAC clone: B6Ng01-132K16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgttagagaatattttaatattaaataatattttacactgtctt
aggttttctattgctgtgaagacatactgtaatagcctcatgttcatgaa
ttccatgtcaatttaacagaatcaaagagaaataagggttccatacattt
acataattaactataacctagctctcagcaatggactagccacagctttt
acatcagtggttctaaacatgcaggttgctacctccttagcaaacctctg
taaccaaattttacttacattgcaattaaaatataagcgacagttatgaa
gtggcaaaaaaaaagtaatttgaaggttgggggtcaccacaacataagga
actgtattaaagggttccagaactaggaagatagagaaccactgcctcag
actacccactgactaacatttgccagcagcagtgggaatgacattaataa
gagttcagaaaacaaaacaggtgatcactagggagtaattcaatcttgtt
ccaagactcccaaaaggaaaacctcacctctaggcaacttgttagattgc
agcatgctgcaaactgacatctcagagcagcattctgggccctgggccct
gggccctgggcccagagcctccaaccaggactgaattgtgtccagccatg
tctgaactcagagtcacagcactggaagtgacatgaacagacgttcttgc
aaacttcatagaactgtacagcagccagtctagactctcctcatttacag
gtagtagatctcattccagatagctgaataaaggacctgcctaaaggaac
aactatttctccaaaatgttgatcctgcatctgctgccacacagggctgg
tgaagctcttcttcctgcccagtctgaactcctttgcaatatagttagaa
atgcattgttccttccacaacataaataatatctaagctcccagatagca
ttagtgattttagtacttgaatacatcacagtcaacttaagacttcttat
acttccaaagctctctatggaaatattttgccatattatgactacttttg
aacaatttgtacatatagaactagacatgaacatcatactttaggattac
catcattacctagcatcattcaggggtgcgagctctcc
gaattcactttgtagaccaggctggcctcgaactcagaaatccgattgct
tctgcctcctgagtgctgggattaaaggcatgtgccaccacgccaggcac
attatttatttcttgtgtgtcttctttattttttgtttgtggatcattta
tttcttaggcgtggttggctcaagttttccttctgttaatttctttagag
gttgatttttagctagagattgcttaactttttgtgtgtatgtgtttttt
ttgtttgtttgtttttgtttttgtttttgttcttttttgttttttgtttt
tttgtttttttgagacatggtttctctttatagccctggctgtcctggaa
ctcactctgtctattaggctggccttgaactcagaattccagctgcctct
gcctcccaagttaaactttggttttaccatgcaatgtttttcttttttcc
aagtactataattggtacttggatgatacttttttcttagtatagtagtc
taggctggcacttgtgatgtcttcaaattttagaacatctgtccaggctg
ttgtgggttttaggatcttattcgggaattcaggtgttattctaataggt
ctgcctctgtatgtaacttggtctttttacccatcctccttttaatgttt
ttctttgttatgtgaagtttagtgttttgatggttatgtgacaaaaggga
ctttcttttctagctcagtctattttggtgttcaggatgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36600397_36601544
seq2: B6Ng01-132K16.b_43_1180 (reverse)

seq1  GGAGAACCTCGCA-CACTGAATGGATGCTAGGTTAATGAATGTTATTCTA  49
      |||| | |||||| | |||||| ||||||||| ||||||  || || |||
seq2  GGAG-AGCTCGCACCCCTGAAT-GATGCTAGG-TAATGATGGTAATCCTA  47

seq1  AAGTATGATGTTCATTGTCTAAGTCCTTTATGTACAAATTGTTCAAAAGT  99
      |||||||||||||| ||||| ||| || ||||||||||||||||||||| 
seq2  AAGTATGATGTTCA-TGTCT-AGTTCTATATGTACAAATTGTTCAAAAG-  94

seq1  TAGTCATTAATATGGCCAAATATTTTCCATAGAGAGCTTTGGAAGTATTA  149
      |||||| ||||||||| ||||| |||||||||||||||||||||||| ||
seq2  TAGTCA-TAATATGGCAAAATA-TTTCCATAGAGAGCTTTGGAAGTA-TA  141

seq1  AGAAGTCCTTAAGTTGACTGTGATGTATTCAAGTACTAAAAATCACTAAT  199
      |||||| |||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAGT-CTTAAGTTGACTGTGATGTATTCAAGTACT-AAAATCACTAAT  189

seq1  GCTATCTTGGGAGCTTAGATATTATTTATGTTGTGGAAGGAACAATGCAT  249
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATC-TGGGAGCTTAGATATTATTTATGTTGTGGAAGGAACAATGCAT  238

seq1  TTCTAACTATATTGCAAAGGAGTTCAGACTGGGCAGGAAGAAGAGCTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACTATATTGCAAAGGAGTTCAGACTGGGCAGGAAGAAGAGCTTCA  288

seq1  CCAGCCCTGTGTGGCAGCAGATGCAGGATCAACATTTTGGAGAAATAGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTGTGTGGCAGCAGATGCAGGATCAACATTTTGGAGAAATAGTT  338

seq1  GTTCC-TTAGGCAGGTCCTTTATTCAGCTATCTGGAATGAGATCTACTAC  398
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTTAGGCAGGTCCTTTATTCAGCTATCTGGAATGAGATCTACTAC  388

seq1  CTGTAAATGAGGAGAGTCTAGACTGGCTGCTGTACAGTTCTATGAAGTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAATGAGGAGAGTCTAGACTGGCTGCTGTACAGTTCTATGAAGTTT  438

seq1  GCAAGAACGTCTGTTCATGTCACTTCCAGTGCTGTGACTCTGAGTTCAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAACGTCTGTTCATGTCACTTCCAGTGCTGTGACTCTGAGTTCAGA  488

seq1  CATGGCTGGACACAATTCAGTCCTGGTTGGAGGCTCTGGGCCCAGGGCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTGGACACAATTCAGTCCTGGTTGGAGGCTCTGGGCCCAGGGCCC  538

seq1  AGGGCCCAGGGCCCAGAATGCTGCTCTGAGATGTCAGTTTGCAGCATGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCAGGGCCCAGAATGCTGCTCTGAGATGTCAGTTTGCAGCATGCT  588

seq1  GCAATCTAACAAGTTGCCTAGAGGTGAGGTTTTCCTTTTGGGAGTCTTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTAACAAGTTGCCTAGAGGTGAGGTTTTCCTTTTGGGAGTCTTGG  638

seq1  AACAAGATTGAATTACTCCCTAGTGATCACCTGTTTTGTTTTCTGAACTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATTGAATTACTCCCTAGTGATCACCTGTTTTGTTTTCTGAACTC  688

seq1  TTATTAATGTCATTCCCACTGCTGCTGGCAAATGTTAGTCAGTGGGTAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATGTCATTCCCACTGCTGCTGGCAAATGTTAGTCAGTGGGTAGT  738

seq1  CTGAGGCAGTGGTTCTCTATCTTCCTAGTTCTGGAACCCTTTAATACAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCAGTGGTTCTCTATCTTCCTAGTTCTGGAACCCTTTAATACAGT  788

seq1  TCCTTATGTTGTGGTGACCCCCAACCTTCAAATTACTTTTTTTTTGCCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATGTTGTGGTGACCCCCAACCTTCAAATTACTTTTTTTTTGCCAC  838

seq1  TTCATAACTGTCGCTTATATTTTAATTGCAATGTAAGTAAAATTTGGTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAACTGTCGCTTATATTTTAATTGCAATGTAAGTAAAATTTGGTTA  888

seq1  CAGAGGTTTGCTAAGGAGGTAGCAACCTGCATGTTTAGAACCACTGATGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTTTGCTAAGGAGGTAGCAACCTGCATGTTTAGAACCACTGATGT  938

seq1  AAAAGCTGTGGCTAGTCCATTGCTGAGAGCTAGGTTATAGTTAATTATGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTGTGGCTAGTCCATTGCTGAGAGCTAGGTTATAGTTAATTATGT  988

seq1  AAATGTATGGAACCCTTATTTCTCTTTGATTCTGTTAAATTGACATGGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATGGAACCCTTATTTCTCTTTGATTCTGTTAAATTGACATGGAA  1038

seq1  TTCATGAACATGAGGCTATTACAGTATGTCTTCACAGCAATAGAAAACCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAACATGAGGCTATTACAGTATGTCTTCACAGCAATAGAAAACCT  1088

seq1  AAGACAGTGTAAAATATTATTTAATATTAAAATATTCTCTAACAGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGTGTAAAATATTATTTAATATTAAAATATTCTCTAACAGAATTC  1138