BAC Information

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BAC

Clone NameB6Ng01-133F14
Chromosome17 (Build37)
Map Location 55,937,366 - 56,078,496
singlet/doubletdoublet
Overlap geneEmr4, Zfp119, BC011426, EG433125, BC031441
Upstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b
Downstream geneEbi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133F14.bB6Ng01-133F14.g
ACCDH933918DH933919
length1,1491,133
definitionDH933918|Mus musculus domesticus DNA, BAC clone: B6Ng01-133F14, 5' end.DH933919|Mus musculus domesticus DNA, BAC clone: B6Ng01-133F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,077,360 - 56,078,496)(55,937,366 - 55,938,502)
sequence
gaattcatactggtgagaaaccctataaatgtagtcagtgtggtaaagcc
tttgcatgcaatagttatcttcaaatgcatgaaagaattcatactggtga
gaaaccctataaatgcaatcagtgtgggaaagcctttgcatgtaacagta
atcttcaaaagcatgaaagaacacatactggagagaaaccctataaatgt
aatcaatgtggcaaagcctttacatgtcatagtactcttcaaatccatga
aagaatacatactggagagaaaccctataaatgtaatcaatgtagtaaag
cctttgcacgtaaaagatatcttcaaatccatgaaagaattcatactgga
gagaaaccctatgaatgtaatcaatgtggtaaagcctttgcatatagcag
tagtcttaacaagcatgaaagaactcatactgcagagaaaccctttgaat
gtaatcagtgtggtatagcctttgcatgtctcagtactcttcaaaagcat
gaaggaattcatactgaaaaaattccccagcaatctaagaaatgaagtgt
agccttgtatactacattcattttcccttctgagttttctcagtgatggt
tgatgaagattagtagaaccattcttcattaaaatattgtctccttttca
aattttagacatattgtcactccaatataggaataccagacaatttggat
aataaaatctatttgtgaaagaaaatatttatgttgtcattattttttgg
attatattagtttatcctaaggcctaaaatttattcgtaacactttctca
gaaacaggtaaatggagagaattgtctcagggagtaaatattgtttattt
taaggttgaagacctgagttcattcttttggacatccatgttactcattc
agtttttgtctgaatactacacttggtttgtatgcacacccacacaccag
tatgtaatacaaatattgttgtaactgaaaataagggccagtgagttgac
tctctagtttagggctcttgctgcagcttactaggtgagtttagatctag
tacttacatagacaactacaaatggacactttcagtgtctgtactggcac
attgcatgccattgcgaggttaataacacacagttaaggtctaaagaga
gaattcagtttctctacagtagaacctaacagggattgcagaagaatgca
gaatcattagaaacaaactttatgttataaaataacattttggagcctta
atgtaacctagcacatcttgagattattacatttagttgcataaattaat
tatatgttataatgggttaagtgatgacattttcatatatttacacaatg
tgtttagctcatctccaccccattatattaatgtattttggtccttctct
tgtataaaacttttcctggggagatgagaacccacaacaaagcaaagcaa
tcatgccaccaaattctagttaatgaagcaatgacattgttaagttaagg
aggagaggctgcacacagttgcagagatatctaaaagattctcataagaa
agagcaacccagtatgcacgaggtcttagaagccctaaaatcctgacaat
ctctatgttttgcaggtacttgtagagataaatgaccctccctttctcag
gcattctcacagctttcataactttcaggaggcaggaatatttgtgaatt
cgaaatttcttgatacttctgaattgtttattcctgaatatcaaaaattg
aatgtttcaagccagaggatattactgtaatacgtacccactttatccct
cttttcaattctaatataactatttcattttcctcctctttcctctttcc
aattcccccttatgtaccctacctttcttctacctcaaattcctggtctc
tttttcattaaatgttcttgttgtatacttatatttcaaaggtattagat
ctccaagatcaccactaaaaccaaagtgggaagtaatggctatacttagt
aggtagaatctagtaatccatatttctgtatacttctttaggtatatccc
acaacttaaatatatacattttacttatgaatgacactacagaaagatgg
agatgagtactaagtcacatgtacacattccacaaagaaaaataattatc
atgcagaaatcttagtaggcaataatgtcatgagaactgttgaactactg
agagtcagagatagaaaaaaggaactgtctttttccagatgattctggag
aaagacaaaagggtctacttctttcttcaagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_56077360_56078496
seq2: B6Ng01-133F14.b_73_1197 (reverse)

seq1  TCTCTTTTAGACTTTTTAACTGTGTG-TATATACCTCTGCAATGGCATGC  49
      |||| |||||||   ||||||||||| |||  ||||| ||||||||||||
seq2  TCTC-TTTAGAC--CTTAACTGTGTGTTATTAACCTC-GCAATGGCATGC  46

seq1  -ATGTGCCAGTTACAGGACAACTTGGAAGTGTCCATTTTGTAGTTTGTCT  98
       ||||||||| |||| ||||   || ||||||||| ||||||| ||||||
seq2  AATGTGCCAG-TACA-GACA--CTGAAAGTGTCCA-TTTGTAG-TTGTCT  90

seq1  ATGTAAGTACTAGATCTAAAACTCACCTAGTTAAGCTTGGCAGCAAGAGC  148
      ||||||||||||||||| |||||||||||| ||||||  |||||||||||
seq2  ATGTAAGTACTAGATCT-AAACTCACCTAG-TAAGCT--GCAGCAAGAGC  136

seq1  CCTAAACTAGAGAGTCAACTCACTGGCCCTTATTTTCAGTTACAACAATA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACTAGAGAGTCAACTCACTGGCCCTTATTTTCAGTTACAACAATA  186

seq1  TTTGTATTACATACTGGTGTGTGGGTGTGCATACAAACCAAGTGTAGTAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTACATACTGGTGTGTGGGTGTGCATACAAACCAAGTGTAGTAT  236

seq1  TCAGACAAAAACTGAATGAGTAACATGGATGTCCAAAAGAATGAACTCAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAAAAACTGAATGAGTAACATGGATGTCCAAAAGAATGAACTCAG  286

seq1  GTCTTCAACCTTAAAATAAACAATATTTACTCCCTGAGACAATTCTCTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAACCTTAAAATAAACAATATTTACTCCCTGAGACAATTCTCTCC  336

seq1  ATTTACCTGTTTCTGAGAAAGTGTTACGAATAAATTTTAGGCCTTAGGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCTGTTTCTGAGAAAGTGTTACGAATAAATTTTAGGCCTTAGGAT  386

seq1  AAACTAATATAATCCAAAAAATAATGACAACATAAATATTTTCTTTCACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATATAATCCAAAAAATAATGACAACATAAATATTTTCTTTCACA  436

seq1  AATAGATTTTATTATCCAAATTGTCTGGTATTCCTATATTGGAGTGACAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATTTTATTATCCAAATTGTCTGGTATTCCTATATTGGAGTGACAA  486

seq1  TATGTCTAAAATTTGAAAAGGAGACAATATTTTAATGAAGAATGGTTCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTAAAATTTGAAAAGGAGACAATATTTTAATGAAGAATGGTTCTA  536

seq1  CTAATCTTCATCAACCATCACTGAGAAAACTCAGAAGGGAAAATGAATGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTTCATCAACCATCACTGAGAAAACTCAGAAGGGAAAATGAATGT  586

seq1  AGTATACAAGGCTACACTTCATTTCTTAGATTGCTGGGGAATTTTTTCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACAAGGCTACACTTCATTTCTTAGATTGCTGGGGAATTTTTTCAG  636

seq1  TATGAATTCCTTCATGCTTTTGAAGAGTACTGAGACATGCAAAGGCTATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTCCTTCATGCTTTTGAAGAGTACTGAGACATGCAAAGGCTATA  686

seq1  CCACACTGATTACATTCAAAGGGTTTCTCTGCAGTATGAGTTCTTTCATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTGATTACATTCAAAGGGTTTCTCTGCAGTATGAGTTCTTTCATG  736

seq1  CTTGTTAAGACTACTGCTATATGCAAAGGCTTTACCACATTGATTACATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAAGACTACTGCTATATGCAAAGGCTTTACCACATTGATTACATT  786

seq1  CATAGGGTTTCTCTCCAGTATGAATTCTTTCATGGATTTGAAGATATCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGGTTTCTCTCCAGTATGAATTCTTTCATGGATTTGAAGATATCTT  836

seq1  TTACGTGCAAAGGCTTTACTACATTGATTACATTTATAGGGTTTCTCTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGTGCAAAGGCTTTACTACATTGATTACATTTATAGGGTTTCTCTCC  886

seq1  AGTATGTATTCTTTCATGGATTTGAAGAGTACTATGACATGTAAAGGCTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTATTCTTTCATGGATTTGAAGAGTACTATGACATGTAAAGGCTT  936

seq1  TGCCACATTGATTACATTTATAGGGTTTCTCTCCAGTATGTGTTCTTTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACATTGATTACATTTATAGGGTTTCTCTCCAGTATGTGTTCTTTCA  986

seq1  TGCTTTTGAAGATTACTGTTACATGCAAAGGCTTTCCCACACTGATTGCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTGAAGATTACTGTTACATGCAAAGGCTTTCCCACACTGATTGCA  1036

seq1  TTTATAGGGTTTCTCACCAGTATGAATTCTTTCATGCATTTGAAGATAAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGGGTTTCTCACCAGTATGAATTCTTTCATGCATTTGAAGATAAC  1086

seq1  TATTGCATGCAAAGGCTTTACCACACTGACTACATTTAT  1137
      |||||||||||||||||||||||||||||||||||||||
seq2  TATTGCATGCAAAGGCTTTACCACACTGACTACATTTAT  1125

seq1: chr17_55937366_55938502
seq2: B6Ng01-133F14.g_68_1200

seq1  GAATTCAGTTTCTCTACAGTAGAACCTAACAGGGATTGCAGAAGAATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTCTCTACAGTAGAACCTAACAGGGATTGCAGAAGAATGCA  50

seq1  GAATCATTAGAAACAAACTTTATGTTATAAAATAACATTTTGGAGCCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATTAGAAACAAACTTTATGTTATAAAATAACATTTTGGAGCCTTA  100

seq1  ATGTAACCTAGCACATCTTGAGATTATTACATTTAGTTGCATAAATTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACCTAGCACATCTTGAGATTATTACATTTAGTTGCATAAATTAAT  150

seq1  TATATGTTATAATGGGTTAAGTGATGACATTTTCATATATTTACACAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTTATAATGGGTTAAGTGATGACATTTTCATATATTTACACAATG  200

seq1  TGTTTAGCTCATCTCCACCCCATTATATTAATGTATTTTGGTCCTTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGCTCATCTCCACCCCATTATATTAATGTATTTTGGTCCTTCTCT  250

seq1  TGTATAAAACTTTTCCTGGGGAGATGAGAACCCACAACAAAGCAAAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAAACTTTTCCTGGGGAGATGAGAACCCACAACAAAGCAAAGCAA  300

seq1  TCATGCCACCAAATTCTAGTTAATGAAGCAATGACATTGTTAAGTTAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCACCAAATTCTAGTTAATGAAGCAATGACATTGTTAAGTTAAGG  350

seq1  AGGAGAGGCTGCACACAGTTGCAGAGATATCTAAAAGATTCTCATAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGCTGCACACAGTTGCAGAGATATCTAAAAGATTCTCATAAGAA  400

seq1  AGAGCAACCCAGTATGCACGAGGTCTTAGAAGCCCTAAAATCCTGACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAACCCAGTATGCACGAGGTCTTAGAAGCCCTAAAATCCTGACAAT  450

seq1  CTCTATGTTTTGCAGGTACTTGTAGAGATAAATGACCCTCCCTTTCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGTTTTGCAGGTACTTGTAGAGATAAATGACCCTCCCTTTCTCAG  500

seq1  GCATTCTCACAGCTTTCATAACTTTCAGGAGGCAGGAATATTTGTGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTCACAGCTTTCATAACTTTCAGGAGGCAGGAATATTTGTGAATT  550

seq1  CGAAATTTCTTGATACTTCTGAATTGTTTATTCCTGAATATCAAAAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATTTCTTGATACTTCTGAATTGTTTATTCCTGAATATCAAAAATTG  600

seq1  AATGTTTCAAGCCAGAGGATATTACTGTAATACGTACCCACTTTATCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTCAAGCCAGAGGATATTACTGTAATACGTACCCACTTTATCCCT  650

seq1  CTTTTCAATTCTAATATAACTATTTCATTTTCCTCCTCTTTCCTCTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAATTCTAATATAACTATTTCATTTTCCTCCTCTTTCCTCTTTCC  700

seq1  AATTCCCCCTTATGTACCCTACCTTTCTTCTACCTCAAATTCCTGGTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCCCTTATGTACCCTACCTTTCTTCTACCTCAAATTCCTGGTCTC  750

seq1  TTTTTCATTAAATGTTCTTGTTGTATACTTATATTTCAAAGGTATTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATTAAATGTTCTTGTTGTATACTTATATTTCAAAGGTATTAGAT  800

seq1  CTCCAAGATCACCACTAAAACCAAAGTGGGAAGTAATGGCTATACTTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGATCACCACTAAAACCAAAGTGGGAAGTAATGGCTATACTTAGT  850

seq1  AGGTAGAATCTAGTAATCCATATATTCTGTATACTTCTTTAGGTATATCC  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGTAGAATCTAGTAATCCATAT-TTCTGTATACTTCTTTAGGTATATCC  899

seq1  CACAACTTAAATATATACATTTTACTTATGAATGACACTACAAGAAAGAT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACAACTTAAATATATACATTTTACTTATGAATGACACTAC-AGAAAGAT  948

seq1  GGAGATGAAGTACTAAGTCACATGTACACA-TCCACAAAGAAAAATAATT  999
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  GGAGATG-AGTACTAAGTCACATGTACACATTCCACAAAGAAAAATAATT  997

seq1  ATCATGCAGAAACTTAAGTAGGCAATAATGTCATGAGAACTGTTGAACAT  1049
      ||||||||||||  | |||||||||||||||||||||||||||||||| |
seq2  ATCATGCAGAAATCTTAGTAGGCAATAATGTCATGAGAACTGTTGAAC-T  1046

seq1  ACTGAGAGTCAGAGATAGAAAAAAGGAACTGGCCTTTTCCAAGATGATCC  1099
      ||||||||||||||||||||||||||||||| | |||||| ||||||| |
seq2  ACTGAGAGTCAGAGATAGAAAAAAGGAACTGTCTTTTTCC-AGATGATTC  1095

seq1  TGGAG-AAGACAAAAGGGTCATACTTCTTTCTTCAAGCA  1137
      ||||| |||||||||||||| ||||||||||||||||||
seq2  TGGAGAAAGACAAAAGGGTC-TACTTCTTTCTTCAAGCA  1133