BAC Information

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BAC

Clone NameB6Ng01-133M10
Chromosome17 (Build37)
Map Location 47,811,728 - 47,948,192
singlet/doubletdoublet
Overlap geneUsp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb
Upstream geneKlhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463
Downstream geneMdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133M10.bB6Ng01-133M10.g
ACCDH934238DH934239
length6471,008
definitionDH934238|Mus musculus domesticus DNA, BAC clone: B6Ng01-133M10, 5' end.DH934239|Mus musculus domesticus DNA, BAC clone: B6Ng01-133M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,947,546 - 47,948,192)(47,811,728 - 47,812,742)
sequence
gaattcaagcctgtggcctcctctgccttccccctcactccaagcctctc
tcagcccctctataaggccacatcccagaagctgaggataatggtgggga
aattggcatccaaagggctcaaagcgtcatcagtaagtgatattctgcaa
acagcagacacctaatcatgtgtggggtttgtggtcattgttttagattt
tggtttctttttttgttttctttctttcttccttcctttctttctttttt
ttaagatttgtttatttatttatttatttatttatttatttattatatgt
aagtacactgtagctgtcttcatatactccagaagagggcatcacattct
gttacggatggttgtgagccaccatgtggttgctgggatttgaactcagg
accttctgaagagcagtcggcactcttaaccactgagccatctctccagc
tccctctttcttttttaaaaaaagatttactttatttatatgagtacact
gtacctgtgacacaccataagagggcatcatatctcattacagatggttg
tgagccaccatgtggttgctgaaaattgaactcatgacctctggaatagc
attcactgctcatggccactgagccatctctgcaggtctggttactg
gaattccctgaacgataccactgcatagaaaaggggtttgtccctttgaa
tcagacagagtgcctgctcactgagatgctagccaagttcaccgagacag
aggccctggaggggagaatctacgcttgtgaccagtgtaacagtgagtgc
tgcacgaagagggcaggggtgcaggtggagcatgcttgaccctccagtca
acagtgacactgacagcactaagtgttctaaaccacttaaagatcttttc
ctcgcagcctctaaaatagctagtacagagtttacattattataaacaga
cctggaccaatgagatggctcaatgggaaaggtgtttgccacacgagcct
ggtgtcttgaattcaatccttagaacccacaaaagggtgggtggagataa
ctgcctgccctggtagcacacatacctacaaatacccacacctacaagca
catacttcttagagtactaaaaataatgccttctgctaggcagtggtggt
gcacgccttttatcctagcacttggagagcagaagcaggcaggtctctga
gttcgaggccagtctggtctacagagcgagttccaggacagccagggcta
cacagagaaaccctgtcttaaaaaaacaaaacaaaacaaggtgcctcctt
ttgactctttctgactggcttcagttatggggaaatgtgtgaaagtggtt
cctgaaacaggagcagtgagaacagtagtacttagcttcctaatgctaca
cgggctctaggctcacaaatgtagtctcatggttcttgtttgactgcatt
cccttgagagctataggatgagaaagtaggttcttatactgatctcacag
atgtaaagtctgtaaactcagactaaaagataggacgatagggctgagag
acttcacaattggtaagggtttgctttgccaacaggagggtcatgacgtg
aagcccctcacatacggaaacagtaggtgtggtagtgtgtgcttctaccc
agccctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_47947546_47948192
seq2: B6Ng01-133M10.b_44_690 (reverse)

seq1  CAGAAACCAGGCCTGGAGAGATGGCTCAGTGGCCAAGAGCACTGACTGCT  50
      ||| |||||| |||| ||||||||||||||||||| ||||| ||| ||||
seq2  CAGTAACCAGACCTGCAGAGATGGCTCAGTGGCCATGAGCAGTGAATGCT  50

seq1  CTTCCAGAGGTCCTGAGTTCAATTCTCAGCAACCACATGGTGGCTCACAA  100
       ||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  ATTCCAGAGGTCATGAGTTCAATTTTCAGCAACCACATGGTGGCTCACAA  100

seq1  CCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCACAGGTACAGT  150
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  CCATCTGTAATGAGATATGATGCCCTCTTATGGTGTGTCACAGGTACAGT  150

seq1  GTACTCATATAAATAAAGTAAATCTTTTTTTAAAAAAGAAAGAGGGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCATATAAATAAAGTAAATCTTTTTTTAAAAAAGAAAGAGGGAGCT  200

seq1  GGAGAGATGGCTCAGTGGTTAAGAGTGCCGACTGCTCTTCCGAAGGTCCT  250
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGAGAGATGGCTCAGTGGTTAAGAGTGCCGACTGCTCTTCAGAAGGTCCT  250

seq1  GAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACAGA  300

seq1  ATCTGATGCCCTCTTCTGGAGTATCTGAAGACAGCTACAGTGTACTTACA  350
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGTGATGCCCTCTTCTGGAGTATATGAAGACAGCTACAGTGTACTTACA  350

seq1  TATAATAAATAAATAAATAAATAAATAAATAAATAAACAAATCTTAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAATAAATAAATAAATAAATAAATAAATAAACAAATCTTAAAAA  400

seq1  AAAGAAAGAAAGGAAGGAAGAAAGAAAGAAAACAAAAAAAGAAACCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGGAAGGAAGAAAGAAAGAAAACAAAAAAAGAAACCAAAA  450

seq1  TCTAAAACAATGACCACAAACCCCACACATGATTAGGTGTCTGCTGTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAACAATGACCACAAACCCCACACATGATTAGGTGTCTGCTGTTTG  500

seq1  CAGAATATCACTTACTGATGACGCTTTGAGCCCTTTGGATGCCAATTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATCACTTACTGATGACGCTTTGAGCCCTTTGGATGCCAATTTCC  550

seq1  CCACCATTATCCTCAGCTTCTGGGATGTGGCCTTATAGAGGGGCTGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATTATCCTCAGCTTCTGGGATGTGGCCTTATAGAGGGGCTGAGAG  600

seq1  AGGCTTGGAGTGAGGGGGAAGGCAGAGGAGGCCACAGGCTTGAATTC  647
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGGAGTGAGGGGGAAGGCAGAGGAGGCCACAGGCTTGAATTC  647

seq1: chr17_47811728_47812742
seq2: B6Ng01-133M10.g_66_1073

seq1  GAATTCCCTGAACGATACCACTGCATAGAAAAGGGGTTTGTCCCTTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGAACGATACCACTGCATAGAAAAGGGGTTTGTCCCTTTGAA  50

seq1  TCAGACAGAGTGCCTGCTCACTGAGATGCTAGCCAAGTTCACCGAGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGAGTGCCTGCTCACTGAGATGCTAGCCAAGTTCACCGAGACAG  100

seq1  AGGCCCTGGAGGGGAGAATCTACGCTTGTGACCAGTGTAACAGTGAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTGGAGGGGAGAATCTACGCTTGTGACCAGTGTAACAGTGAGTGC  150

seq1  TGCACGAAGAGGGCAGGGGTGCAGGTGGAGCATGCTTGACCCTCCAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGAAGAGGGCAGGGGTGCAGGTGGAGCATGCTTGACCCTCCAGTCA  200

seq1  ACAGTGACACTGACAGCACTAAGTGTTCTAAACCACTTAAAGATCTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACACTGACAGCACTAAGTGTTCTAAACCACTTAAAGATCTTTTC  250

seq1  CTCGCAGCCTCTAAAATAGCTAGTACAGAGTTTACATTATTATAAACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCAGCCTCTAAAATAGCTAGTACAGAGTTTACATTATTATAAACAGA  300

seq1  CCTGGACCAATGAGATGGCTCAATGGGAAAGGTGTTTGCCACACGAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACCAATGAGATGGCTCAATGGGAAAGGTGTTTGCCACACGAGCCT  350

seq1  GGTGTCTTGAATTCAATCCTTAGAACCCACAAAAGGGTGGGTGGAGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTTGAATTCAATCCTTAGAACCCACAAAAGGGTGGGTGGAGATAA  400

seq1  CTGCCTGCCCTGGTAGCACACATACCTACAAATACCCACACCTACAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCCCTGGTAGCACACATACCTACAAATACCCACACCTACAAGCA  450

seq1  CATACTTCTTAGAGTACTAAAAATAATGCCTTCTGCTAGGCAGTGGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTCTTAGAGTACTAAAAATAATGCCTTCTGCTAGGCAGTGGTGGT  500

seq1  GCACGCCTTTTATCCTAGCACTTGGAGAGCAGAAGCAGGCAGGTCTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCCTTTTATCCTAGCACTTGGAGAGCAGAAGCAGGCAGGTCTCTGA  550

seq1  GTTCGAGGCCAGTCTGGTCTACAGAGCGAGTTCCAGGACAGCCAGGGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGAGGCCAGTCTGGTCTACAGAGCGAGTTCCAGGACAGCCAGGGCTA  600

seq1  CACAGAGAAACCCTGTCTTAAAAAAACAAAACAAAACAAGGTGCCTCC-T  649
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CACAGAGAAACCCTGTCTTAAAAAAACAAAACAAAACAAGGTGCCTCCTT  650

seq1  TTGACTCTTTCTGACTGGCTTCAGTTATGGGGAAATGTGTGAAAGTGGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTTTCTGACTGGCTTCAGTTATGGGGAAATGTGTGAAAGTGGTT  700

seq1  CCTGAAACAGGGGCAGTGAGAACAGTAGTACTTAGCTTCCTAATGCTACA  749
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAACAGGAGCAGTGAGAACAGTAGTACTTAGCTTCCTAATGCTACA  750

seq1  CGGGCTCTAGGCTCACAAATGTAGTCTCATGGTTCTTGTTTGATTTGAAT  799
      |||||||||||||||||||||||||||||||||||||||||||  || ||
seq2  CGGGCTCTAGGCTCACAAATGTAGTCTCATGGTTCTTGTTTGA-CTGCAT  799

seq1  TCCCATTGAGTGCTATAGGATGAGAAAGTAGGTTCTTATACTGAGTCCAC  849
      |||| ||||| |||||||||||||||||||||||||||||||||   |||
seq2  TCCC-TTGAGAGCTATAGGATGAGAAAGTAGGTTCTTATACTGATCTCAC  848

seq1  AGATCTAAAGTCTGTTAAACTCATACTAAAAGATAGGATGATAGGGCTAG  899
      |||| ||||||||| |||||||| |||||||||||||| ||||||||| |
seq2  AGATGTAAAGTCTG-TAAACTCAGACTAAAAGATAGGACGATAGGGCT-G  896

seq1  AGAGACTTCTCAGTTGGTAAAGGGTTTGCTTTGCAAACAAAAGGGAAATG  949
      ||||||||| || ||||| ||||||||||||||| ||||  ||||  |||
seq2  AGAGACTTCACAATTGGT-AAGGGTTTGCTTTGCCAACAGGAGGGTCATG  945

seq1  AGGTGAAGCCCCTAACATAGGGAAAGAGGCAGGTGTGGTAGTGTGTGCCT  999
      | ||||||||||| ||||| ||||| | | |||||||||||||||||| |
seq2  ACGTGAAGCCCCTCACATACGGAAACA-GTAGGTGTGGTAGTGTGTGCTT  994

seq1  CCAACCCCAGCCCTGA  1015
      | |  |||||||||||
seq2  CTA--CCCAGCCCTGA  1008