BAC Information

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BAC

Clone NameB6Ng01-133M15
Chromosome17 (Build37)
Map Location 79,282,375 - 79,437,753
singlet/doubletdoublet
Overlap gene2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425
Upstream geneLOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2
Downstream geneQpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133M15.bB6Ng01-133M15.g
ACCDH934248DH934249
length1,0211,130
definitionDH934248|Mus musculus domesticus DNA, BAC clone: B6Ng01-133M15, 5' end.DH934249|Mus musculus domesticus DNA, BAC clone: B6Ng01-133M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,437,116 - 79,437,753)(79,282,375 - 79,283,519)
sequence
gaattctctatgtagaacaggacggccttgaactcctaaaaaattcctct
gtgtctggcacctgcattctggaattaaaggacagatgcacaccaccatg
ctcaacctgtagcgctctcttttttaaattatgcttttaaaatttatata
tgtatatatctgtgtgtctgcttgtgtgtgtgtacaggagcacacaggtg
cataagaaagtcagaagagggagttagagctccttggagctagagttatg
ggtggcaccctatgtagatgctggggacctaactcttgtcccatgaggag
cagcaagcactcttacaagttttatatttaattgtgtaattaattagtag
aatatcctttgtgtccttgcacttcagatatactgagtttctttggtcca
tgggttttatgttttcacaaaatttggaaaataattggctataacctctt
caaatatgtttcttctctccctattcatgtgcacattacaccatcctttg
gaatctccagttatgtgtgtagtaatttgtttaaggtttcccagtaggtt
cttgggtgctatatgttgttctgttctgtcttgtttctttctttgcattt
ttgtttctttctttcttgtctctttcacttttattttatttctcttcaag
tttgccactcttttattttgcaatgtttagtctgctctttgtctcattaa
tgttattttttttttcatcccagacattcctctatatgattgctttagat
ccaatttagaccatcatgtctttccttgtgtgttcatatattttcttctg
tcttcttagatgcatggactatagttataagaagtgtttatcctcacctg
ctcacttatcatatgtatcatctttattgggtagtatttcttttccttaa
tgtgcctattcctttgcatacctagtaatttttaatacataacaggcata
gtaaatttattttttttcatgctggaaatttgttttgtacttctttgaat
ggtttcatcttttgtactaga
gaattctctcttaaatctatttgtccagccctcagcagttacctgctagc
cccttgttgcatatcactcaccaggccaggcccctgttaagatccacctg
ctcccagaaaggccacaaggaatgttttatcacaaggccaacaccagcag
tccctgcttaataaggaaccttgcctgagctggagagatggctcagcagg
taaaagcactgactgctcttccagaggtcctgagttcaattcccagcaac
cacatggtggctcacaaccatctgtaatgggatccgatgccctcttctgg
tgtgtctgaagacagctatagtgaactcgtatacgggttaaaacaaaatt
aaaaaaaaaaaaagaaaagaaaagcaatcctaccttcctgtaagactgta
acacactcccataatggaacttgctggcccaggacttgagggtttagctt
gtggcacactgcccagtgacacatcttcatgcctgcactctgagctgagc
accatccctatgaggagaactcaggagctagaattagaaccgggaaattg
tactcccaacatggcaactggtgagagatggaaaagtcccaagacagagc
ccccaatttcacagtcaacattgctgtgcccactcctttcttcttccttt
cctgtaaggtaggagaacaacagcctaacttttcttgtagcgtggatcct
gggtgtaatttgaggtctctaatgtgaaaagcccgtgaccagatcagcct
cgataaactcccgctccctactatagcaccttaaatgaacacccgactac
ctagggagaagctgacagcgagatctctgcagacatttctctactgaaca
ttcacaatgggatgccattctgctcactctacctattccattctaggtgg
tttactcttggcatttccaaagacccatgatcaccataatttcttcgggt
tcttggaacatctagctgaagtgtagccactgaaaggggtgcctctggat
ctttctggagcgatggttagggagcagtggtgcagtgatgtacacccatc
tatcacctcccattctccacgagtgtggtgtttgttttggaattggcatg
tagatagactggctcaaattgtcgtgaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_79437116_79437753
seq2: B6Ng01-133M15.b_47_684 (reverse)

seq1  TAAAATAAAAGTGAAAGAGACAAGAAAGAAAGAAACAAAAATGCAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAAGTGAAAGAGACAAGAAAGAAAGAAACAAAAATGCAAAGAA  50

seq1  AGAAACAAGACAGAACAGAACAACATATAGCACCCAAGAACCTACTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAGACAGAACAGAACAACATATAGCACCCAAGAACCTACTGGGA  100

seq1  AACCTTAAACAAATTACTACACACATAACTGGAGATTCCAAAGGATGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTAAACAAATTACTACACACATAACTGGAGATTCCAAAGGATGGTG  150

seq1  TAATGTGCACATGAATAGGGAGAGAAGAAACATATTTGAAGAGGTTATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGCACATGAATAGGGAGAGAAGAAACATATTTGAAGAGGTTATAG  200

seq1  CCAATTATTTTCCAAATTTTGTGAAAACATAAAACCCATGGACCAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTATTTTCCAAATTTTGTGAAAACATAAAACCCATGGACCAAAGAA  250

seq1  ACTCAGTATATCTGAAGTGCAAGGACACAAAGGATATTCTACTAATTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTATATCTGAAGTGCAAGGACACAAAGGATATTCTACTAATTAAT  300

seq1  TACACAATTAAATATAAAACTTGTAAGAGTGCTTGCTGCTCCTCATGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAATTAAATATAAAACTTGTAAGAGTGCTTGCTGCTCCTCATGGGA  350

seq1  CAAGAGTTAGGTCCCCAGCATCTACATAGGGTGCCACCCATAACTCTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTTAGGTCCCCAGCATCTACATAGGGTGCCACCCATAACTCTAGC  400

seq1  TCCAAGGAGCTCTAACTCCCTCTTCTGACTTTCTTATGCACCTGTGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGAGCTCTAACTCCCTCTTCTGACTTTCTTATGCACCTGTGTGCT  450

seq1  CCTGTACACACACACAAGCAGACACACAGATATATACATATATAAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACACACACACAAGCAGACACACAGATATATACATATATAAATTTT  500

seq1  AAAAGCATAATTTAAAAAAGAGAGCGCTACAGGTTGAGCATGGTGGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATAATTTAAAAAAGAGAGCGCTACAGGTTGAGCATGGTGGTGTG  550

seq1  CATCTGTCCTTTAATTCCAGAATGCAGGTGCCAGACACAGAGGAATTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTCCTTTAATTCCAGAATGCAGGTGCCAGACACAGAGGAATTTTT  600

seq1  TAGGAGTTCAAGGCCGTCCTGTTCTACATAGAGAATTC  638
      ||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTTCAAGGCCGTCCTGTTCTACATAGAGAATTC  638

seq1: chr17_79282375_79283519
seq2: B6Ng01-133M15.g_68_1197

seq1  GAATTCTCTCTTAAATCTATTTGTCCAGCCCTCAGCAGTTACCTGCTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTTAAATCTATTTGTCCAGCCCTCAGCAGTTACCTGCTAGC  50

seq1  CCCTTGTTGCATATCACTCACCAGGCCAGGCCCCTGTTAAGATCCACCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTTGCATATCACTCACCAGGCCAGGCCCCTGTTAAGATCCACCTG  100

seq1  CTCCCAGAAAGGCCACAAGGAATGTTTTATCACAAGGCCAACACCAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGAAAGGCCACAAGGAATGTTTTATCACAAGGCCAACACCAGCAG  150

seq1  TCCCTGCTTAATAAGGAACCTTGCCTGAGCTGGAGAGATGGCTCAGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCTTAATAAGGAACCTTGCCTGAGCTGGAGAGATGGCTCAGCAGG  200

seq1  TAAAAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAAC  250

seq1  CACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCCCTCTTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCCCTCTTCTGG  300

seq1  TGTGTCTGAAGACAGCTATAGTGAACTCGTATACGGGTTAAAACAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGAAGACAGCTATAGTGAACTCGTATACGGGTTAAAACAAAATT  350

seq1  AAAAAAAAAAAAAGAAAAGAAAAGCAATCCTACCTTCCTGTAAGACTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAGAAAAGAAAAGCAATCCTACCTTCCTGTAAGACTGTA  400

seq1  ACACACTCCCATAATGGAACTTGCTGGCCCAGGACTTGAGGGTTTAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCCCATAATGGAACTTGCTGGCCCAGGACTTGAGGGTTTAGCTT  450

seq1  GTGGCACACTGCCCAGTGACACATCTTCATGCCTGCACTCTGAGCTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACACTGCCCAGTGACACATCTTCATGCCTGCACTCTGAGCTGAGC  500

seq1  ACCATCCCTATGAGGAGAACTCAGGAGCTAGAATTAGAACCGGGAAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCCTATGAGGAGAACTCAGGAGCTAGAATTAGAACCGGGAAATTG  550

seq1  TACTCCCAACATGGCAACTGGTGAGAGATGGAAAAGTCCCAAGACAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCCAACATGGCAACTGGTGAGAGATGGAAAAGTCCCAAGACAGAGC  600

seq1  CCCCAATTTCACAGTCAACATTGCTGTGCCCACTCCTTTCTTCTTCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATTTCACAGTCAACATTGCTGTGCCCACTCCTTTCTTCTTCCTTT  650

seq1  CCTGTAAGGTAGGAGAACAACAGCCTAACTTTTCTTGTAGCGTGGATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAGGTAGGAGAACAACAGCCTAACTTTTCTTGTAGCGTGGATCCT  700

seq1  GGGTGTAATTTGAGGTCTCTAATGTGAAAAGCCCGTGACCAGATCAGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTAATTTGAGGTCTCTAATGTGAAAAGCCCGTGACCAGATCAGCCT  750

seq1  CGATAAACTCCCGCTCCCTACTATAGCACCTTAAATGAACACCCGACTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAAACTCCCGCTCCCTACTATAGCACCTTAAATGAACACCCGACTAC  800

seq1  CTAGGGAGAAGCTGACAGCGAGATCTCTGCAGACATTTCTCTACTGAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGAGAAGCTGACAGCGAGATCTCTGCAGACATTTCTCTACTGAACA  850

seq1  TTCACAAT-GGATGCCATTCTGCTCACTCTACCTATTCCATTCTAGGTGG  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAATGGGATGCCATTCTGCTCACTCTACCTATTCCATTCTAGGTGG  900

seq1  TTTACTCTTGGCATTTCCAAAGACCCATGATCACCATAATTTCTTCGGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTACTCTTGGCATTTCCAAAGACCCATGATCACCATAATTTCTTCGGGT  950

seq1  TCTTGGAACATCTAGCTGAAGTGTTAGCCACTGAAAGGGGTGCCTCTGGA  999
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTTGGAACATCTAGCTGAAGTG-TAGCCACTGAAAGGGGTGCCTCTGGA  999

seq1  TCTTTCTGGAGGCGAATGGTTAGGGAGCAAGTGTGCAAGTGATGTACACC  1049
      |||||||||| ||| ||||||||||||||   |||| |||||||||||||
seq2  TCTTTCTGGA-GCG-ATGGTTAGGGAGCAGTGGTGC-AGTGATGTACACC  1046

seq1  CAATCTTATCAACTCCCAATATTCTCCACGAGT-TGGTGAGTGTTTTGTT  1098
      | ||| ||||| |||||   ||||||||||||| |||||     ||||||
seq2  C-ATC-TATCACCTCCC---ATTCTCCACGAGTGTGGTG-----TTTGTT  1086

seq1  TTGAGATTGGCATGTAGTATAGACTGGCTTCAAATTTGTCGTGAAGC  1145
      |||  |||||||||||| |||||||||| ||||| ||||||||||||
seq2  TTGGAATTGGCATGTAG-ATAGACTGGC-TCAAA-TTGTCGTGAAGC  1130