BAC Information

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BAC

Clone NameB6Ng01-134L11
Chromosome17 (Build37)
Map Location 20,174,057 - 20,317,931
singlet/doubletdoublet
Overlap geneV2r7, LOC100041856, EG545190, Fpr-rs7
Upstream geneEG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664
Downstream geneFpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134L11.bB6Ng01-134L11.g
ACCDH934943DH934944
length1,1401,142
definitionDH934943|Mus musculus domesticus DNA, BAC clone: B6Ng01-134L11, 5' end.DH934944|Mus musculus domesticus DNA, BAC clone: B6Ng01-134L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,316,794 - 20,317,931)(20,174,057 - 20,175,206)
sequence
gaattctatggagattttaggggaaagagggacatcaaccacactattct
gaagagagaaataggacacccatgatcaaaatattggcaatgtatgacaa
tgtgtgctgtagtgccatgaacactttataagttataatatactcgctag
ttaattaggaagagaatttgatgggaaggaatctatgtatgttactatga
gctcacttagtgtatatgggtgttcatgattaaataggcacacccatgga
acttactacttttgttcatgtaaaacaagtagcaagaagctaccctctaa
atatctatgcaaataaaaatgacactgtcacacttatttattgatggccc
tctttgtagtgaacagcactactcagagattgacatcagctcctagaatt
gagaataagtgtatgttgatggctcagtttgaaataaggtattaatacta
cttcttttttgtctgagatattgtataataatgaatgaaagaatgctaaa
cactaggagatagtttataacattcccaagtcttgaatgggaaactggta
aaaagagaggcacaattgatccagctgcctgagaattggaattatgaact
cagttgatggaaacccactgctaagcaattgggatttaagcaagatggta
tagtgaaagccctctgaggatgaaatattggaactataccttgtaactct
gggtttttatattttctgtaaatttcacataaacctagaaacagccagag
aaaaatccctactaagtaattatctcaatcagattgtccttttaaaattt
gggtaagggcaattttgttgctatttgattaattataacacaacccacaa
tggattataatatttctcagcattgggcctaggctgtataagaattgtat
cagaaagacagaggatccaaaccaagaaaatcttctgtgctcatgattac
tgcttccagattctgtcttcagatctgccttgatttcctcaatgatggaa
tatatcctgtgtgatagtatgatgaaagtatcgcttctagtgtcttagtc
tgagtgtttatttaccagaaggttgagaattgtttgcagaatgaactatt
agaattgagccttgaatgtaagtatacttacaaatgtgtc
gaattcattaaatgtggtgtgtgcttatatatttagagtatttgtttatt
tccataatagtaggaagcataaaaagagtcagggatagatcacactggaa
cacaagttaaatgcttaaatcctgatttgaaggcagaaacagaaaaaaat
agagatgtctcagggacttttttaaacctaaagctagcctctagcactat
atctccccctaaaaagccaaaacctctaatctttcctaataggtttagta
aataaaataagtgttctgtaaaactctaatccaagagaagccagaaagtt
agcaagatcttcagtgtacagaagactacaaaataatactattttctgaa
agcagaaaaattgttcccataattcataacacacgacaaaatgtgttaga
tgcaggaaaacttaattcagacaaatttcagcatagatattgaaggtagt
catgaagacattccctttcccagaaaaaaaaataaggtaataggtattca
tacatactggaaggtgaatcagtgttatttttccgtgtgcaacacctggt
tggtaagcaatctttaagtgacaagcacacaagtaagtatacacttatac
acgagtatcatgaactgtattagatagtttaatttaaaatgttgggagtg
aggaaaaaggaaattaaatctgggaggagtgagattgatgaatgtggtga
aaacacattttatgaaattatcaaacaactaaaaatgagaaatgagctgt
tgataatccctaggaaggtgcaacagatatgagtcttagatgcttcttaa
aagtcaatgaaatatattttgaaaagctatctttgatactgtattaatac
atgttgttaaaggcactgtgaaatgaaaacattgaaaagtacaggggaat
atattttatcttccatagtaatatttgcactggattaaaaatataaatca
gggatgatctgtaatgactctgttgagctatttcagggaatagtgatgag
ctatgacatttaaatttcttttaaacgaaataaaatgttcaaatatgact
tctactcaaatctttgtcatttgctaacacatggtgcattcagtggagga
aatagagttttcatagaactgcatttcttgttcattagatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_20316794_20317931
seq2: B6Ng01-134L11.b_63_1185 (reverse)

seq1  GACACATTTTGTAAAAGTATATACCTACACTTCAAGGCCTCATATTCTAA  50
      |||||| |||||||     ||||| |||| ||||||| |||| |||||||
seq2  GACACA-TTTGTAA----GTATACTTACA-TTCAAGG-CTCA-ATTCTAA  42

seq1  TAGTTTTCATCCTTGCAAACAA-TCTCA--CCTCTGGTAAATAAACACTC  97
      |||  ||||| | ||||||||| |||||  | ||||||||||||||||||
seq2  TAG--TTCATTC-TGCAAACAATTCTCAACCTTCTGGTAAATAAACACTC  89

seq1  AGACATAAGACACTAGAAGCGATACTTTCATTCATACTATCACACAGGAT  147
      |||| ||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGAC-TAAGACACTAGAAGCGATACTTTCA-TCATACTATCACACAGGAT  137

seq1  ATATTCCATCATTTGAGGAAATCAAGGCAAGATCTGAAGACAGAATCTGG  197
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  ATATTCCATCA-TTGAGGAAATCAAGGC-AGATCTGAAGACAGAATCTGG  185

seq1  AAGCAGTAATCATGAGCACAGAAGATTTTTCTTGGTTTGGATCCTCTGTC  247
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAGCAGTAATCATGAGCACAGAAGA-TTTTCTTGGTTTGGATCCTCTGTC  234

seq1  TTTCTTGATACAATTTCTTATACAGCCTAGGCCCAATGCTGAGAAATATT  297
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTC-TGATACAA-TTCTTATACAGCCTAGGCCCAATGCTGAGAAATATT  282

seq1  ATAATCCATTGTGGGTTGTGTTATAATTAATCAAATAGCAACAAAATTGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCATTGTGGGTTGTGTTATAATTAATCAAATAGCAACAAAATTGC  332

seq1  CCTTACCCAAATTTTAAAAGGACAATCTGATTGAGATAATTACTTAGTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCCAAATTTTAAAAGGACAATCTGATTGAGATAATTACTTAGTAG  382

seq1  GGATTTTTCTCTGGCTGTTTCTAGGTTTATGTGAAATTTACAGAAAATAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTCTCTGGCTGTTTCTAGGTTTATGTGAAATTTACAGAAAATAT  432

seq1  AAAAACCCAGAGTTACAAGGTATAGTTCCAATATTTCATCCTCAGAGGGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCAGAGTTACAAGGTATAGTTCCAATATTTCATCCTCAGAGGGC  482

seq1  TTTCACTATACCATCTTGCTTAAATCCCAATTGCTTAGCAGTGGGTTTCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTATACCATCTTGCTTAAATCCCAATTGCTTAGCAGTGGGTTTCC  532

seq1  ATCAACTGAGTTCATAATTCCAATTCTCAGGCAGCTGGATCAATTGTGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTGAGTTCATAATTCCAATTCTCAGGCAGCTGGATCAATTGTGCC  582

seq1  TCTCTTTTTACCAGTTTCCCATTCAAGACTTGGGAATGTTATAAACTATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTTACCAGTTTCCCATTCAAGACTTGGGAATGTTATAAACTATC  632

seq1  TCCTAGTGTTTAGCATTCTTTCATTCATTATTATACAATATCTCAGACAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTGTTTAGCATTCTTTCATTCATTATTATACAATATCTCAGACAA  682

seq1  AAAAGAAGTAGTATTAATACCTTATTTCAAACTGAGCCATCAACATACAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGTAGTATTAATACCTTATTTCAAACTGAGCCATCAACATACAC  732

seq1  TTATTCTCAATTCTAGGAGCTGATGTCAATCTCTGAGTAGTGCTGTTCAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCAATTCTAGGAGCTGATGTCAATCTCTGAGTAGTGCTGTTCAC  782

seq1  TACAAAGAGGGCCATCAATAAATAAGTGTGACAGTGTCATTTTTATTTGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGAGGGCCATCAATAAATAAGTGTGACAGTGTCATTTTTATTTGC  832

seq1  ATAGATATTTAGAGGGTAGCTTCTTGCTACTTGTTTTACATGAACAAAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATATTTAGAGGGTAGCTTCTTGCTACTTGTTTTACATGAACAAAAG  882

seq1  TAGTAAGTTCCATGGGTGTGCCTATTTAATCATGAACACCCATATACACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGTTCCATGGGTGTGCCTATTTAATCATGAACACCCATATACACT  932

seq1  AAGTGAGCTCATAGTAACATACATAGATTCCTTCCCATCAAATTCTCTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGCTCATAGTAACATACATAGATTCCTTCCCATCAAATTCTCTTC  982

seq1  CTAATTAACTAGCGAGTATATTATAACTTATAAAGTGTTCATGGCACTAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTAACTAGCGAGTATATTATAACTTATAAAGTGTTCATGGCACTAC  1032

seq1  AGCACACATTGTCATACATTGCCAATATTTTGATCATGGGTGTCCTATTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACATTGTCATACATTGCCAATATTTTGATCATGGGTGTCCTATTT  1082

seq1  CTCTCTTCAGAATAGTGTGGTTGATGTCCCTCTTTCCCCTA  1138
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCAGAATAGTGTGGTTGATGTCCCTCTTTCCCCTA  1123

seq1: chr17_20174057_20175206
seq2: B6Ng01-134L11.g_67_1208

seq1  GAATTCATTAAATGTGGTGTGTGCTTATATATTTAGAGTATTTGTTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAATGTGGTGTGTGCTTATATATTTAGAGTATTTGTTTATT  50

seq1  TCCATAATAGTAGGAAGCATAAAAAGAGTCAGGGATAGATCACACTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAATAGTAGGAAGCATAAAAAGAGTCAGGGATAGATCACACTGGAA  100

seq1  CACAAGTTAAATGCTTAAATCCTGATTTGAAGGCAGAAACAGAAAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTTAAATGCTTAAATCCTGATTTGAAGGCAGAAACAGAAAAAAAT  150

seq1  AGAGATGTCTCAGGGACTTTTTTAAACCTAAAGCTAGCCTCTAGCACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTCTCAGGGACTTTTTTAAACCTAAAGCTAGCCTCTAGCACTAT  200

seq1  ATCTCCCCCTAAAAAGCCAAAACCTCTAATCTTTCCTAATAGGTTTAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCCCTAAAAAGCCAAAACCTCTAATCTTTCCTAATAGGTTTAGTA  250

seq1  AATAAAATAAGTGTTCTGTAAAACTCTAATCCAAGAGAAGCCAGAAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAAGTGTTCTGTAAAACTCTAATCCAAGAGAAGCCAGAAAGTT  300

seq1  AGCAAGATCTTCAGTGTACAGAAGACTACAAAATAATACTATTTTCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGATCTTCAGTGTACAGAAGACTACAAAATAATACTATTTTCTGAA  350

seq1  AGCAGAAAAATTGTTCCCATAATTCATAACACACGACAAAATGTGTTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAAAATTGTTCCCATAATTCATAACACACGACAAAATGTGTTAGA  400

seq1  TGCAGGAAAACTTAATTCAGACAAATTTCAGCATAGATATTGAAGGTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAAAACTTAATTCAGACAAATTTCAGCATAGATATTGAAGGTAGT  450

seq1  CATGAAGACATTCCCTTTCCCAGAAAAAAAAATAAGGTAATAGGTATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGACATTCCCTTTCCCAGAAAAAAAAATAAGGTAATAGGTATTCA  500

seq1  TACATACTGGAAGGTGAATCAGTGTTATTTTTCCGTGTGCAACACCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACTGGAAGGTGAATCAGTGTTATTTTTCCGTGTGCAACACCTGGT  550

seq1  TGGTAAGCAATCTTTAAGTGACAAGCACACAAGTAAGTATACACTTATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGCAATCTTTAAGTGACAAGCACACAAGTAAGTATACACTTATAC  600

seq1  ACGAGTATCATGAACTGTATTAGATAGTTTAATTTAAAATGTTGGGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTATCATGAACTGTATTAGATAGTTTAATTTAAAATGTTGGGAGTG  650

seq1  AGGAAAAAGGAAATTAAATCTGGGAGGAGTGAGATTGATGAATGTGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAGGAAATTAAATCTGGGAGGAGTGAGATTGATGAATGTGGTGA  700

seq1  AAACACATTTTATGAAATTATCAAACAACTAAAAATGAGAAATGAGCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATTTTATGAAATTATCAAACAACTAAAAATGAGAAATGAGCTGT  750

seq1  TGATAATCCCTAGGAAGGTGCAACAGATATGAGTCTTAGATGCTTCTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATCCCTAGGAAGGTGCAACAGATATGAGTCTTAGATGCTTCTTAA  800

seq1  AAGTCAATGAAATATATTTTGAAAAGCTATCTTTGATACTGTATTAATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAATGAAATATATTTTGAAAAGCTATCTTTGATACTGTATTAATAC  850

seq1  ATGTTGTTAAAGGCACTGTGAAATGAAAACATTGAAAAGTACAGGGGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTTAAAGGCACTGTGAAATGAAAACATTGAAAAGTACAGGGGAAT  900

seq1  ATATTTTATCTTCCAATAGTAATATTTGCACTGGATTAAAAATATAAATC  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATATTTTATCTTCC-ATAGTAATATTTGCACTGGATTAAAAATATAAATC  949

seq1  AGGGATGATCTGTAATGACTCTGTTGAGCTATTTCAAGGGAATAGTGATG  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGGATGATCTGTAATGACTCTGTTGAGCTATTTC-AGGGAATAGTGATG  998

seq1  AGCTATGACATTTAAAATTCCTTTAAAACGAAATAAAATGTTCATATATG  1050
      ||||||||||||| ||||| |||| ||||||||||||||||||| |||||
seq2  AGCTATGACATTT-AAATTTCTTTTAAACGAAATAAAATGTTCAAATATG  1047

seq1  ACTTCTACTCAAATCTTTGTCATTTGCTACCACATTGTGGAATCCAGTGG  1100
      ||||||||||||||||||||||||||||| ||||| || | || ||||||
seq2  ACTTCTACTCAAATCTTTGTCATTTGCTAACACATGGT-GCATTCAGTGG  1096

seq1  A-GAAATAGGAAGTTTTCCATAGAACTGCATTTACCTGTCTCATTAGATA  1149
      | |||||||  |||||| ||||||||||||||| | ||| ||||||||||
seq2  AGGAAATAG--AGTTTT-CATAGAACTGCATTT-CTTGT-TCATTAGATA  1141

seq1  T  1150
      |
seq2  T  1142