BAC Information

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BAC

Clone NameB6Ng01-135A12
Chromosome17 (Build37)
Map Location 63,636,878 - 63,810,390
singlet/doubletdoublet
Overlap geneFbxl17
Upstream geneEfna5
Downstream genePpia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2, LOC669778, Pja2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135A12.bB6Ng01-135A12.g
ACCDH935182DH935183
length1,1711,191
definitionDH935182|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A12, 5' end.DH935183|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,809,216 - 63,810,390)(63,636,878 - 63,638,086)
sequence
gaattctcagtaaaatgtgataaaaatgatgcttctttcccattgcttat
tttagagaaatgatttctagtaatgtcaaagataatataatcagggcatt
atttaaataagatcctggaattgattttcagccttaatctattctcacac
caaattagtgtgagaatgtgtattttaacagttgattgattttcctctgt
gaacgtatgcattgttttaggctatctttctggtttttggccatgaaggc
atgaattaaaatcctaaaaactgggtgatttcatctccttactaacatgc
acccaaaattctaaaagttgggtgatttcatttgctacaatagtggtgtt
tggcagctgtcttaagttcacataagggtttgaaacattttcctttaagg
tttagagttgaaatacaatacattgtatcctttgttttgtcacggaaagg
gatttaaacaaactttcttttgcacttgttgaatatgtatttcatagtaa
ccaccatgaagtttgcagcagttaggaagatgtagaatcaaagataaaag
atacatattcaagaaggcttgggttcacagttggcgcataatcctttctg
ctctcactggtaccctaaccctgtacctatcagaacaaaagaaactgaat
tggaaattgtgggagccggggcacattctgttggcagcacatcgcatggc
ccataggcgttgtcaggtctcagtttgacaccctttattctttgtgacag
atgtgaggtagggtctatgagggggaagtcattactagagagagggcagt
gtcagatcaaaagtaaccagtgatcaaacaaggtaaaggctgtggagaat
aggcgctctttctgtcctcagcagctgcctgagcacggaagggagcggtc
cttctgtggcaggcaagttgattttctttgatgtgcagtgaattacagtc
agatggaagcttaagtgcagtgcagaggtctttacttcctacttcttgag
catttagtgtttaaatgtttattctatactcagacatatatagaagtcac
tttctgctgaataaccacaggaaggttactgctgtagctgctccagtttg
tcacctggggtgcttagcaatagcactcactggtaaacagcctcctgtac
acgccgggcttggctctgaac
gaattcactgggggagaatttggagcagtcagagcagaggcccatcttgg
cagcttcccaggatgtgcagcagtaacctggagttaggagttcaccctct
acagctccacaccgcttcctgcagctgacagttggaagctctgatctttc
cacttttcagtggcaaagagcttcaaaattcacccttcatttgaaaatgc
agaaagccaagtcatggcctctgactacaaacaacatatttgttgctgtt
cttgttcaaatgattattttggtaagtactctgtgacttcatatcttcaa
tatgagtctttgctataaaacaatactgataatgacttaagaaagtaatt
aaatccaaaaggaaacaaatctggtgagaaaaaaatgtcttcccttttat
gtcaggttgtgtattttatcatgcattttataatcttgtagccaaatatt
tcaactatctacggacaaagaagatattttctcttttatttcccacaagg
tttctctctcttttcagagttttggaagccactgtggcttctattgtagt
taggaggagcaattgtcctaggtaacttttatattaactctctgtatttt
actcatcaaaaagtttccaaccactcagccttcttggtctctgagcgagt
cacttccacggttttctgtgttgacgttctctttccttttccttctctga
tattcaaagtaagctgtgtaagccactctgcctgtgataggcttcctcat
cttccttcatcaattggatccattccttcactctaaatattaatttacat
gtaattgtcttgctcaatgtcactttcactagaaagatgacctgcattta
aaataaagaaataatcaatcttctaagacttctgcatttgtagaacatca
atctaagtaagctacaggctcaaatgtccaattaaatgtgcaatgcttat
ggagtaccccatacaaccagcctctgtgcgtctctgatagcaaaggaaag
ctcagagcttagatgtggtttctgccttccagaagctattttcatcgaag
acaacacacatgacagttcaagggaaccaatagcaatgtgagaatgaatc
gtgagtgtcgatatatgaaggcctgtagtcctgcgaaaaatatgtgacag
tgctcattgctgggactgtttgtggatggaattgaccacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_63809216_63810390
seq2: B6Ng01-135A12.b_47_1217 (reverse)

seq1  GTTCAGAGCCCAGGCCCGC-TGTAC-TGAGGCTTGTTTAACAGTGAGTGC  48
      |||||||||| || || || |||||  ||||| |||||| ||||||||||
seq2  GTTCAGAGCCAAGCCCGGCGTGTACAGGAGGC-TGTTTACCAGTGAGTGC  49

seq1  TATTGCTAAGCACAC--AGTGACAAACT-GAGCAGCTACAGCAGTATACC  95
      ||||||||||||| |   |||||||||| ||||||||||||||||| |||
seq2  TATTGCTAAGCACCCCAGGTGACAAACTGGAGCAGCTACAGCAGTA-ACC  98

seq1  TTCACTGT-GTTATTCAGCAGAAAGTGACTTCTATATATGTCTGAGTAAT  144
      ||| |||| |||||||||||||||||||||||||||||||||||||| ||
seq2  TTC-CTGTGGTTATTCAGCAGAAAGTGACTTCTATATATGTCTGAGT-AT  146

seq1  AGAAATAAAACATTTAAACACTAAAATTGCTCAAGAAGTAGGAAGTAAAG  194
      ||||   ||||||||||||||||||  |||||||||||||||||||||||
seq2  AGAA--TAAACATTTAAACACTAAA--TGCTCAAGAAGTAGGAAGTAAAG  192

seq1  ACCTCTGCACTGCACTTAAGCTTCCATTCTGACTTGTAATTCACTGCACA  244
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  ACCTCTGCACTGCACTTAAGCTTCCA-TCTGAC-TGTAATTCACTGCACA  240

seq1  TCAAAGAAAATCAACTTGCCTGCCACAGAAGGACCGCTCCCTTCCGTGCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAAAATCAACTTGCCTGCCACAGAAGGACCGCTCCCTTCCGTGCT  290

seq1  CAGGCAGCTGCTGAGGACAGAAAGAGCGCCTATTCTCCACAGCCTTTACC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGCTGCTGAGGACAGAAAGAGCGCCTATTCTCCACAGCCTTTACC  340

seq1  TTGTTTGATCACTGGTTACTTTTGATCTGACACTGCCCTCTCTCTAGTAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGATCACTGGTTACTTTTGATCTGACACTGCCCTCTCTCTAGTAA  390

seq1  TGACTTCCCCCTCATAGACCCTACCTCACATCTGTCACAAAGAATAAAGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCCCCCTCATAGACCCTACCTCACATCTGTCACAAAGAATAAAGG  440

seq1  GTGTCAAACTGAGACCTGACAACGCCTATGGGCCATGCGATGTGCTGCCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAAACTGAGACCTGACAACGCCTATGGGCCATGCGATGTGCTGCCA  490

seq1  ACAGAATGTGCCCCGGCTCCCACAATTTCCAATTCAGTTTCTTTTGTTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGTGCCCCGGCTCCCACAATTTCCAATTCAGTTTCTTTTGTTCT  540

seq1  GATAGGTACAGGGTTAGGGTACCAGTGAGAGCAGAAAGGATTATGCGCCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTACAGGGTTAGGGTACCAGTGAGAGCAGAAAGGATTATGCGCCA  590

seq1  ACTGTGAACCCAAGCCTTCTTGAATATGTATCTTTTATCTTTGATTCTAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAACCCAAGCCTTCTTGAATATGTATCTTTTATCTTTGATTCTAC  640

seq1  ATCTTCCTAACTGCTGCAAACTTCATGGTGGTTACTATGAAATACATATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTAACTGCTGCAAACTTCATGGTGGTTACTATGAAATACATATT  690

seq1  CAACAAGTGCAAAAGAAAGTTTGTTTAAATCCCTTTCCGTGACAAAACAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGTGCAAAAGAAAGTTTGTTTAAATCCCTTTCCGTGACAAAACAA  740

seq1  AGGATACAATGTATTGTATTTCAACTCTAAACCTTAAAGGAAAATGTTTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACAATGTATTGTATTTCAACTCTAAACCTTAAAGGAAAATGTTTC  790

seq1  AAACCCTTATGTGAACTTAAGACAGCTGCCAAACACCACTATTGTAGCAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTTATGTGAACTTAAGACAGCTGCCAAACACCACTATTGTAGCAA  840

seq1  ATGAAATCACCCAACTTTTAGAATTTTGGGTGCATGTTAGTAAGGAGATG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCACCCAACTTTTAGAATTTTGGGTGCATGTTAGTAAGGAGATG  890

seq1  AAATCACCCAGTTTTTAGGATTTTAATTCATGCCTTCATGGCCAAAAACC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACCCAGTTTTTAGGATTTTAATTCATGCCTTCATGGCCAAAAACC  940

seq1  AGAAAGATAGCCTAAAACAATGCATACGTTCACAGAGGAAAATCAATCAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATAGCCTAAAACAATGCATACGTTCACAGAGGAAAATCAATCAA  990

seq1  CTGTTAAAATACACATTCTCACACTAATTTGGTGTGAGAATAGATTAAGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAAATACACATTCTCACACTAATTTGGTGTGAGAATAGATTAAGG  1040

seq1  CTGAAAATCAATTCCAGGATCTTATTTAAATAATGCCCTGATTATATTAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATCAATTCCAGGATCTTATTTAAATAATGCCCTGATTATATTAT  1090

seq1  CTTTGACATTACTAGAAATCATTTCTCTAAAATAAGCAATGGGAAAGAAG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACATTACTAGAAATCATTTCTCTAAAATAAGCAATGGGAAAGAAG  1140

seq1  CATCATTTTTATCACATTTTACTGAGAATTC  1175
      |||||||||||||||||||||||||||||||
seq2  CATCATTTTTATCACATTTTACTGAGAATTC  1171

seq1: chr17_63636878_63638086
seq2: B6Ng01-135A12.g_68_1258

seq1  GAATTCACTGGGGGAGAATTTGGAGCAGTCAGAGCAGAGGCCCATCTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGGGGAGAATTTGGAGCAGTCAGAGCAGAGGCCCATCTTGG  50

seq1  CAGCTTCCCAGGATGTGCAGCAGTAACCTGGAGTTAGGAGTTCACCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCCAGGATGTGCAGCAGTAACCTGGAGTTAGGAGTTCACCCTCT  100

seq1  ACAGCTCCACACCGCTTCCTGCAGCTGACAGTTGGAAGCTCTGATCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCCACACCGCTTCCTGCAGCTGACAGTTGGAAGCTCTGATCTTTC  150

seq1  CACTTTTCAGTGGCAAAGAGCTTCAAAATTCACCCTTCATTTGAAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTCAGTGGCAAAGAGCTTCAAAATTCACCCTTCATTTGAAAATGC  200

seq1  AGAAAGCCAAGTCATGGCCTCTGACTACAAACAACATATTTGTTGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCCAAGTCATGGCCTCTGACTACAAACAACATATTTGTTGCTGTT  250

seq1  CTTGTTCAAATGATTATTTTGGTAAGTACTCTGTGACTTCATATCTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCAAATGATTATTTTGGTAAGTACTCTGTGACTTCATATCTTCAA  300

seq1  TATGAGTCTTTGCTATAAAACAATACTGATAATGACTTAAGAAAGTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTCTTTGCTATAAAACAATACTGATAATGACTTAAGAAAGTAATT  350

seq1  AAATCCAAAAGGAAACAAATCTGGTGAGAAAAAAATGTCTTCCCTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAAAAGGAAACAAATCTGGTGAGAAAAAAATGTCTTCCCTTTTAT  400

seq1  GTCAGGTTGTGTATTTTATCATGCATTTTATAATCTTGTAGCCAAATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTTGTGTATTTTATCATGCATTTTATAATCTTGTAGCCAAATATT  450

seq1  TCAACTATCTACGGACAAAGAAGATATTTTCTCTTTTATTTCCCACAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTATCTACGGACAAAGAAGATATTTTCTCTTTTATTTCCCACAAGG  500

seq1  TTTCTCTCTCTTTTCAGAGTTTTGGAAGCCACTGTGGCTTCTATTGTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTCTTTTCAGAGTTTTGGAAGCCACTGTGGCTTCTATTGTAGT  550

seq1  TAGGAGGAGCAATTGTCCTAGGTAACTTTTATATTAACTCTCTGTATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGAGCAATTGTCCTAGGTAACTTTTATATTAACTCTCTGTATTTT  600

seq1  ACTCATCAAAAAGTTTCCAACCACTCAGCCTTCTTGGTCTCTGAGCGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCAAAAAGTTTCCAACCACTCAGCCTTCTTGGTCTCTGAGCGAGT  650

seq1  CACTTCCACGGTTTTCTGTGTTGACGTTCTCTTTCCTTTTCCTTCTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCACGGTTTTCTGTGTTGACGTTCTCTTTCCTTTTCCTTCTCTGA  700

seq1  TATTCAAAGTAAGCTGTGTAAGCCACTCTGCCTGTGATAGGCTTCCTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAAGTAAGCTGTGTAAGCCACTCTGCCTGTGATAGGCTTCCTCAT  750

seq1  CTTCCTTCATCAATTGGATCCATTCCTTCACTCTAAATATTAATTTACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCATCAATTGGATCCATTCCTTCACTCTAAATATTAATTTACAT  800

seq1  GTAATTGTCTTGCTCAATGTCACTTTCACTAGAAAGATGACCTGCATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGTCTTGCTCAATGTCACTTTCACTAGAAAGATGACCTGCATTTA  850

seq1  AAATAAAGAAATTAATCAATCTTCTAAGACTTCTGCATTTGTAGAACATC  900
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGAAA-TAATCAATCTTCTAAGACTTCTGCATTTGTAGAACATC  899

seq1  AATCTAAGTAAGCTACAGGCTCAAAATGTCCAATTAAATGTGCAATGCTT  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AATCTAAGTAAGCTACAGGCTC-AAATGTCCAATTAAATGTGCAATGCTT  948

seq1  ATGGAGTACCCCATACAACCAGCCTCTGTGCGTCTCTGATAGCAAAGGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTACCCCATACAACCAGCCTCTGTGCGTCTCTGATAGCAAAGGAA  998

seq1  AGCTCAAGAGCTTAAGATGTGGTTTCTGCCTTCCAAGAAGCTTATTTTCA  1050
      ||||| ||||||| |||||||||||||||||||| |||||| ||||||||
seq2  AGCTC-AGAGCTT-AGATGTGGTTTCTGCCTTCC-AGAAGC-TATTTTCA  1044

seq1  TCAGAAGACAAACACACATGACAAGTTCAAGGGGAACCAAATAGCAGATG  1100
      || |||||| |||||||||||| ||||||| ||||||| ||||||| |||
seq2  TC-GAAGAC-AACACACATGAC-AGTTCAA-GGGAACC-AATAGCA-ATG  1088

seq1  TGAGGATAGGATTCAGTGAGTG-CAGTATATGAGGACATGTAGTCCTGCA  1149
      |||| ||  || || ||||||| |  ||||||| | | ||||||||||| 
seq2  TGAGAAT--GAATC-GTGAGTGTCGATATATGAAGGCCTGTAGTCCTGC-  1134

seq1  GAAAAATATGTG-CACTGCTCACATTGCCTGGTCCTGTTTGTGTGATGGA  1198
      |||||||||||| || ||||  ||||| ||||  ||||||||| ||||||
seq2  GAAAAATATGTGACAGTGCT--CATTG-CTGGGACTGTTTGTG-GATGGA  1180

seq1  TTTGACCACAC  1209
       ||||||||||
seq2  ATTGACCACAC  1191