BAC Information

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BAC

Clone NameB6Ng01-135E15
Chromosome17 (Build37)
Map Location 55,541,607 - 55,662,781
singlet/doubletdoublet
Overlap geneSt6gal2
Upstream geneTrp53-ps, LOC240117, EG629178, LOC100043833, LOC100043485, LOC677496
Downstream geneLOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135E15.bB6Ng01-135E15.g
ACCDH935366DH935367
length1,1981,058
definitionDH935366|Mus musculus domesticus DNA, BAC clone: B6Ng01-135E15, 5' end.DH935367|Mus musculus domesticus DNA, BAC clone: B6Ng01-135E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,541,607 - 55,542,813)(55,661,720 - 55,662,781)
sequence
gaattcattaaagaacagaaattctaatccattttcttctgtatttttat
acatgatctgtaaattatgaaggataaacccagattgtatcagcacctcc
caggtagttaataaatctcaacactgatgaaaataacttgaaaagaatca
gaaaattaaaagccttcttctgttgtgggagataataaaaaaatgaaccc
gctaactctcagtggaaccaggccatgctccctcactcctgccaaggcca
acaactctctaaagtctgcgcctggtgatctcactcgctcggtctctcgg
cccaccaactcgccagccctcctagacaggccacatggctcctacccggc
cgcttctcagacagggcctccgagtttctctcactttcacacaacacccc
atgcacccttggttagccttctgaacacctggtagaatcatgactcttag
tcttaattggccaatcagttttatgtatcaataataacaaaatttacaag
atgccaatacaataatttaagagccaaatgataatgataaagctttaacc
caatattctaacgttttgataacaccacgtcagcctccgttctgcttctc
cctctcctcctcagacctctctctctctatcttctcaattcctctctctg
cctcccttcttcttctgcccaatcacaagcctcccactgccctattgtta
ttggacagggacaatcttgtaacattcttcatcaattcaacattttatat
ttgtaaaattagtttacttgacatttgttctctgccatgcacaaaagatg
ctatggcaaacctaaattcttgatttcatcaatgtgccttcttagacagg
agttagatagtaagattgtacagtagaaaccatgggatgtggaaggttaa
acactctaggacacacagtactcacaagtctgaattttattccttacctt
ctgtgcttcagtgttcagttgctcttgcttcttttcggacatatatatct
ttccatctaacaggtaagtttctttctcttctgcctaagtattctactca
ggatcatggggttctatagtcaaaatttttctttcataagatggactcct
tctttcttaacttctatcactcttgaaggtacccaactcgaaacttaagt
ttacctcctatatcatactgttctgggtctgaattacttgattctttc
gttattgcttgacttgcctttaaagggagagaggaaattaaacctgtaat
ttggccactaggctacatgactcttcaaggttggcagaggtgggggttgt
aaggcttacttgggctggaacatgcaggcccagagcagggggataaacag
tcctgcctctgccagtcttaggacaagattttgaggagtagacatgtaga
cctcattcatgtcttcactcttgctctggatgggctccctaagtagtatg
gcttcccagctccacagcagtatgctacagttggaactaccttccctaaa
ctcatgtagcagtttaactcatgggggaacctttcaatgatgactatgga
atgcacatttcactctcctgaagatatagataccatttccacaggagtga
tatgcctcttatagaagtgagttcttatagaccccccactcttctctgac
atgctcactcactaaatactgcattctttcatgttttgatacctctagaa
ggccttgtcaaatactagcatgttacactcaaacttttcagcctccacag
ccatggaaataaatatctctatttgtgtcactgtgccatagcactagaaa
actgaaagtaatagtggttttctgttatgactatcttatgggaaaacaca
gtgttttaggtatggctacaagctcatagcagcagaagtgagggccaaaa
gtcaacagttcagttgctacattatttcttggtgcaagtatcactttgtc
ctcaccgacctgtgaggtgccactgctccctctctcactttgaatgtgta
agatgtgtgtgaggtgtggggctcagtttttttctgctcagaacactgtc
ccggtcatcctttatgaggaagcttcctatcttatagaagctcaggcagc
tctcacagagaagtgagaggagccattcagcaggtagcagtacctggtag
agtgtgatgagaccagcttaaatctgctggtccagtgccttaaacctgcc
atcctagtgactttaaatctattgtctctgtgctctctggtagtaggatg
cccagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_55541607_55542813
seq2: B6Ng01-135E15.b_45_1242

seq1  GAATTCATTAAAGAACAGAAATTCTAATCCATTTTCTTCTGTATTTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAAGAACAGAAATTCTAATCCATTTTCTTCTGTATTTTTAT  50

seq1  ACATGATCTGTAAATTATGAAGGATAAACCCAGATTGTATCAGCACCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATCTGTAAATTATGAAGGATAAACCCAGATTGTATCAGCACCTCC  100

seq1  CAGGTAGTTAATAAATCTCAACACTGATGAAAATAACTTGAAAAGAATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGTTAATAAATCTCAACACTGATGAAAATAACTTGAAAAGAATCA  150

seq1  GAAAATTAAAAGCCTTCTTCTGTTGTGGGAGATAATAAAAAAATGAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTAAAAGCCTTCTTCTGTTGTGGGAGATAATAAAAAAATGAACCC  200

seq1  GCTAACTCTCAGTGGAACCAGGCCATGCTCCCTCACTCCTGCCAAGGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTCTCAGTGGAACCAGGCCATGCTCCCTCACTCCTGCCAAGGCCA  250

seq1  ACAACTCTCTAAAGTCTGCGCCTGGTGATCTCACTCGCTCGGTCTCTCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCTCTAAAGTCTGCGCCTGGTGATCTCACTCGCTCGGTCTCTCGG  300

seq1  CCCACCAACTCGCCAGCCCTCCTAGACAGGCCACATGGCTCCTACCCGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAACTCGCCAGCCCTCCTAGACAGGCCACATGGCTCCTACCCGGC  350

seq1  CGCTTCTCAGACAGGGCCTCCGAGTTTCTCTCACTTTCACACAACACCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCTCAGACAGGGCCTCCGAGTTTCTCTCACTTTCACACAACACCCC  400

seq1  ATGCACCCTTGGTTAGCCTTCTGAACACCTGGTAGAATCATGACTCTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCCTTGGTTAGCCTTCTGAACACCTGGTAGAATCATGACTCTTAG  450

seq1  TCTTAATTGGCCAATCAGTTTTATGTATCAATAATAACAAAATTTACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTGGCCAATCAGTTTTATGTATCAATAATAACAAAATTTACAAG  500

seq1  ATGCCAATACAATAATTTAAGAGCCAAATGATAATGATAAAGCTTTAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAATACAATAATTTAAGAGCCAAATGATAATGATAAAGCTTTAACC  550

seq1  CAATATTCTAACGTTTTGATAACACCACGTCAGCCTCCGTTCTGCTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTCTAACGTTTTGATAACACCACGTCAGCCTCCGTTCTGCTTCTC  600

seq1  CCTCTCCTCCTCAGACCTCTCTCTCTCTATCTTCTCAATTCCTCTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTCCTCAGACCTCTCTCTCTCTATCTTCTCAATTCCTCTCTCTG  650

seq1  CCTCCCTTCTTCTTCTGCCCAATCACAAGCCTCCCACTGCCCTATTGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTCTTCTTCTGCCCAATCACAAGCCTCCCACTGCCCTATTGTTA  700

seq1  TTGGACAGGGACAATCTTGTAACATTCTTCATCAATTCAACA-TTTATAT  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTGGACAGGGACAATCTTGTAACATTCTTCATCAATTCAACATTTTATAT  750

seq1  TTGTAAAATTAGTTTACTTGACATTTGTTCTCTGCCATGCACAAAAGATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAATTAGTTTACTTGACATTTGTTCTCTGCCATGCACAAAAGATG  800

seq1  CTATGGCAAACCTAAATTCTTGATTTCATCAATGTGCCTTCTTAGACAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCAAACCTAAATTCTTGATTTCATCAATGTGCCTTCTTAGACAGG  850

seq1  AGTTAGATAGTAAGATTGTACAGTAGAAACCATGGGATGTGGAAGGTTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGATAGTAAGATTGTACAGTAGAAACCATGGGATGTGGAAGGTTAA  900

seq1  ACACTCTAGGACACACAGTACTCACAAGTCTGAATTTTTATTCCTTACCT  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACACTCTAGGACACACAGTACTCACAAGTCTGAA-TTTTATTCCTTACCT  949

seq1  TCTGTGCTTCAGTGTTCAGTTGCTCTTGCTTCTTTTCGGACCATATATAT  999
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTGTGCTTCAGTGTTCAGTTGCTCTTGCTTCTTTTCGGA-CATATATAT  998

seq1  CTTTCCATCTAACAGGTAAGTTTCTTTCTCTTCTGCCTAAGTA-TCTACT  1048
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTTCCATCTAACAGGTAAGTTTCTTTCTCTTCTGCCTAAGTATTCTACT  1048

seq1  CAAGATCAT-GGGTTCTATAGTCATAATTTTTTCTTTTCATAAGAT-GAC  1096
      || |||||| |||||||||||||| |||||||   ||||||||||| |||
seq2  CAGGATCATGGGGTTCTATAGTCAAAATTTTT--CTTTCATAAGATGGAC  1096

seq1  TCCTTC-TTCTATACTTCTATTCTACTTCCTGAAAGTACCCAACTTCAGA  1145
      |||||| ||||  ||||||||   || || |||| ||||||||| ||  |
seq2  TCCTTCTTTCTTAACTTCTAT--CAC-TCTTGAAGGTACCCAAC-TCGAA  1142

seq1  ACTCAGTTTTACCTCCTTATATCATTACCTGTTTCTGGTCTGAAATTAAC  1195
      ||| |  ||||||||| ||||||||   |||||   |||||| |||||  
seq2  ACTTAAGTTTACCTCC-TATATCAT--ACTGTTCTGGGTCTG-AATTA--  1186

seq1  CTTGATTCTTTC  1207
      ||||||||||||
seq2  CTTGATTCTTTC  1198

seq1: chr17_55661720_55662781
seq2: B6Ng01-135E15.g_78_1135 (reverse)

seq1  TCTCTTGGGCATCCTAACTACCAGGAGGCACAGAGACAATAGATTTAAAG  50
      |||| |||||||||| ||||||||   |||||||||||||||||||||||
seq2  TCTC-TGGGCATCCT-ACTACCAGAGAGCACAGAGACAATAGATTTAAAG  48

seq1  TCACTAGGATGGCAGGTTTAAAGGCACTGGAACAGCAGATTTAAGCTGGT  100
      ||||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  TCACTAGGATGGCAGGTTT-AAGGCACTGGACCAGCAGATTTAAGCTGGT  97

seq1  CTCATTCACACTTCTACCAGGTACTGCTACCTGCTGAATGGCTCCTCTCA  150
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTCA-TCACAC-TCTACCAGGTACTGCTACCTGCTGAATGGCTCCTCTCA  145

seq1  CTTCTCTGTGGGAGCTGCCTGAGCTTCTATAAGGTAGGAAGCTTCCTCAT  200
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  CTTCTCTGTGAGAGCTGCCTGAGCTTCTATAAGATAGGAAGCTTCCTCAT  195

seq1  AAAGGATGACC-GGACAGTGTTCTGAGCAGAAAAAAACTGAGCCCCACAC  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGACCGGGACAGTGTTCTGAGCAGAAAAAAACTGAGCCCCACAC  245

seq1  CTCACACACATCTTACACATTCAAAGTGAGAGAGGGAGCAGTGGCACCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACACATCTTACACATTCAAAGTGAGAGAGGGAGCAGTGGCACCTC  295

seq1  ACAGGTCGGTGAGGACAAAGTGATACTTGCACCAAGAAATAATGTAGCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCGGTGAGGACAAAGTGATACTTGCACCAAGAAATAATGTAGCAA  345

seq1  CTGAACTGTTGACTTTTGGCCCTCACTTCTGCTGCTATGAGCTTGTAGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTGTTGACTTTTGGCCCTCACTTCTGCTGCTATGAGCTTGTAGCC  395

seq1  ATACCTAAAACACTGTGTTTTCCCATAAGATAGTCATAACAGAAAACCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTAAAACACTGTGTTTTCCCATAAGATAGTCATAACAGAAAACCAC  445

seq1  TATTACTTTCAGTTTTCTAGTGCTATGGCACAGTGACACAAATAGAGATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTTCAGTTTTCTAGTGCTATGGCACAGTGACACAAATAGAGATA  495

seq1  TTTATTTCCATGGCTGTGGAGGCTGAAAAGTTTGAGTGTAACATGCTAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCCATGGCTGTGGAGGCTGAAAAGTTTGAGTGTAACATGCTAGT  545

seq1  ATTTGACAAGGCCTTCTAGAGGTATCAAAACATGAAAGAATGCAGTATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACAAGGCCTTCTAGAGGTATCAAAACATGAAAGAATGCAGTATTT  595

seq1  AGTGAGTGAGCATGTCAGAGAAGAGTGGGGGGTCTATAAGAACTCACTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTGAGCATGTCAGAGAAGAGTGGGGGGTCTATAAGAACTCACTTC  645

seq1  TATAAGAGGCATATCACTCCTGTGGAAATGGTATCTATATCTTCAGGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAGGCATATCACTCCTGTGGAAATGGTATCTATATCTTCAGGAGA  695

seq1  GTGAAATGTGCATTCCATAGTCATCATTGAAAGGTTCCCCCATGAGTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATGTGCATTCCATAGTCATCATTGAAAGGTTCCCCCATGAGTTAA  745

seq1  ACTGCTACATGAGTTTAGGGAAGGTAGTTCCAACTGTAGCATACTGCTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTACATGAGTTTAGGGAAGGTAGTTCCAACTGTAGCATACTGCTGT  795

seq1  GGAGCTGGGAAGCCATACTACTTAGGGAGCCCATCCAGAGCAAGAGTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGGAAGCCATACTACTTAGGGAGCCCATCCAGAGCAAGAGTGAA  845

seq1  GACATGAATGAGGTCTACATGTCTACTCCTCAAAATCTTGTCCTAAGACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAATGAGGTCTACATGTCTACTCCTCAAAATCTTGTCCTAAGACT  895

seq1  GGCAGAGGCAGGACTGTTTATCCCCCTGCTCTGGGCCTGCATGTTCCAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGGACTGTTTATCCCCCTGCTCTGGGCCTGCATGTTCCAGC  945

seq1  CCAAGTAAGCCTTACAACCCCCACCTCTGCCAACCTTGAAGAGTCATGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTAAGCCTTACAACCCCCACCTCTGCCAACCTTGAAGAGTCATGTA  995

seq1  GCCTAGTGGCCAAATTACAGGTTTAATTTCCTCTCTCCCTTTAAAGGCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTGGCCAAATTACAGGTTTAATTTCCTCTCTCCCTTTAAAGGCAA  1045

seq1  GTCAAGCAATAAC  1062
      |||||||||||||
seq2  GTCAAGCAATAAC  1058