BAC Information

Click to search

BAC

Clone NameB6Ng01-135O06
Chromosome17 (Build37)
Map Location 29,651,655 - 29,785,950
singlet/doubletdoublet
Overlap gene4933413N12Rik, Tbc1d22b, Rnf8
Upstream gene4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1
Downstream gene1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3, Btbd9, EG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135O06.bB6Ng01-135O06.g
ACCDH935816DH935817
length8491,048
definitionDH935816|Mus musculus domesticus DNA, BAC clone: B6Ng01-135O06, 5' end.DH935817|Mus musculus domesticus DNA, BAC clone: B6Ng01-135O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,785,103 - 29,785,950)(29,651,655 - 29,652,710)
sequence
gaattccaggccagccagagcgatcctttcaacaagtaaacaatacacac
aggatgaaggcaagatagagtcagttcaactcatttaaaatttttcattt
tgaaattatctcagttaagagaaaaggttaggagtaatacagattatttc
cacatacatacccttttattgttattgttttgttttatttgacagtgttt
cactgtgtaggcctggtggcctagaacttagtctgtagatcaggctggcc
ttgaactcacagagacctacctgcttctccttcccaagtgctgggatcaa
agggatgtgctatcatgcctggttactcttttctttctacatataatcat
accaatctcttatagttttctttattattatatgttcattttgctatatg
agcatatagattagtttttataaataatgagattgtgggcaaaatgcttt
cttatgccaaaatactacagtgttcatatcataaaaacaaggatagtccc
ttacttacccttaattatcaaaacaagcaagttaacattattaatatgac
tcagtaacccataaacattatttatgccttaccagttgtctcataatgtc
ctttgaagaaaataatctttttcccccatccctgggaccaatacatgtgc
tacctaatacaaataggtctcagatgcaaactaaaagcaaatggttacat
agaataaatagcctagtgcatagaactgaggcaagactggaccaggccct
gtatgtactggaaatgaattctgagtatattaaataaaaaaagactatat
catcacagggattaaaatgatgtagagatgagagatgggggggggggaa
gtgagtacacagtaggaggagtgttcagggctgggaggaatgtgattcaa
acgaatagtgttggggagaatggctcggtgggtaagagctgccaaagcat
gtgaccctgagttcagatcacagaagccagtctggagcatggtgtgcacc
tggaatcccggtactgaggccggaggatttctgaggtttttagacagctt
aggcagtgtagccaggcaatagcaaactccagtctggtgtaggagagacc
atcttgaggggataaagaagagtgatcatggacatctgacatctgcctct
ggcccccatgcacagccccacggggacgaacagatctccactcccagaca
cttcttttacttcactttattttttgagacacggtcttataggtctaatg
tagactaggactctttctgtagacaaggttatcttctaacgcacagacat
tggacttcctcagcctcccagtgccgagacagtgccgagacagaacgtga
accccaccgtatctggcttcaaacacttttgttttgttgttcctacacag
catatggtctcaagcagcccaggctagcccgaaacatgaacatacagatg
gggaagagtttgaactcctgatcccatacctccaatcaccaaacacagtt
tccaggcccacaccaccaccatgccaatgtttagaaggctacttatttgt
tcatttgtttatgtacgtagttttctgagacaaggtttaaaggtactaga
taggatataaggtaaccctactatcccactctccattgaggctgctgcat
attaggagttaagaagtgtatagaaagccgggcgtggtggcccacgcctt
taatcccagcactcgggaggcagaggcaggaggatttctgagttcgaggc
cagcctggtctacaaagtgagctccaggacagccagggctatacagagaa
ccctgtctcgaaaaaacaaaaacaaacaacaaataaaaaaccaaacgaac
caaaaaaccagaagtgatagaaagggttggagagaagtgctcagtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_29785103_29785950
seq2: B6Ng01-135O06.b_50_898 (reverse)

seq1  -TTCCCCCCCCCCATCTCTCATCTCTACATCATTTTAATCCCTGTGATGA  49
       | |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCCCCCCCATCTCTCATCTCTACATCATTTTAATCCCTGTGATGA  50

seq1  TATAGTCTTTTTTTATTTAATATACTCAGAATTCATTTCCAGTACATACA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCTTTTTTTATTTAATATACTCAGAATTCATTTCCAGTACATACA  100

seq1  GGGCCTGGTCCAGTCTTGCCTCAGTTCTATGCACTAGGCTATTTATTCTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGGTCCAGTCTTGCCTCAGTTCTATGCACTAGGCTATTTATTCTA  150

seq1  TGTAACCATTTGCTTTTAGTTTGCATCTGAGACCTATTTGTATTAGGTAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCATTTGCTTTTAGTTTGCATCTGAGACCTATTTGTATTAGGTAG  200

seq1  CACATGTATTGGTCCCAGGGATGGGGGAAAAAGATTATTTTCTTCAAAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTATTGGTCCCAGGGATGGGGGAAAAAGATTATTTTCTTCAAAGG  250

seq1  ACATTATGAGACAACTGGTAAGGCATAAATAATGTTTATGGGTTACTGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATGAGACAACTGGTAAGGCATAAATAATGTTTATGGGTTACTGAG  300

seq1  TCATATTAATAATGTTAACTTGCTTGTTTTGATAATTAAGGGTAAGTAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTAATAATGTTAACTTGCTTGTTTTGATAATTAAGGGTAAGTAAG  350

seq1  GGACTATCCTTGTTTTTATGATATGAACACTGTAGTATTTTGGCATAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTATCCTTGTTTTTATGATATGAACACTGTAGTATTTTGGCATAAGA  400

seq1  AAGCATTTTGCCCACAATCTCATTATTTATAAAAACTAATCTATATGCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTTGCCCACAATCTCATTATTTATAAAAACTAATCTATATGCTC  450

seq1  ATATAGCAAAATGAACATATAATAATAAAGAAAACTATAAGAGATTGGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCAAAATGAACATATAATAATAAAGAAAACTATAAGAGATTGGTA  500

seq1  TGATTATATGTAGAAAGAAAAGAGTAACCAGGCATGATAGCACATCCCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATATGTAGAAAGAAAAGAGTAACCAGGCATGATAGCACATCCCTT  550

seq1  TGATCCCAGCACTTGGGAAGGAGAAGCAGGTAGGTCTCTGTGAGTTCAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCAGCACTTGGGAAGGAGAAGCAGGTAGGTCTCTGTGAGTTCAAG  600

seq1  GCCAGCCTGATCTACAGACTAAGTTCTAGGCCACCAGGCCTACACAGTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGATCTACAGACTAAGTTCTAGGCCACCAGGCCTACACAGTGA  650

seq1  AACACTGTCAAATAAAACAAAACAATAACAATAAAAGGGTATGTATGTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGTCAAATAAAACAAAACAATAACAATAAAAGGGTATGTATGTGG  700

seq1  AAATAATCTGTATTACTCCTAACCTTTTCTCTTAACTGAGATAATTTCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCTGTATTACTCCTAACCTTTTCTCTTAACTGAGATAATTTCAA  750

seq1  AATGAAAAATTTTAAATGAGTTGAACTGACTCTATCTTGCCTTCATCCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAATTTTAAATGAGTTGAACTGACTCTATCTTGCCTTCATCCTG  800

seq1  TGTGTATTGTTTACTTGTTGAAAGGATCGCTCTGGCTGGCCTGGAATTC  848
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTGTTTACTTGTTGAAAGGATCGCTCTGGCTGGCCTGGAATTC  849

seq1: chr17_29651655_29652710
seq2: B6Ng01-135O06.g_77_1124

seq1  GTGAGTACACAGTAGGAGGAGTGTTCAGGGCTGGGAGGAATGTGATTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTACACAGTAGGAGGAGTGTTCAGGGCTGGGAGGAATGTGATTCAA  50

seq1  ACGAATAGTGTTGGGGAGAATGGCTCGGTGGGTAAGAGCTGCCAAAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATAGTGTTGGGGAGAATGGCTCGGTGGGTAAGAGCTGCCAAAGCAT  100

seq1  GTGACCCTGAGTTCAGATCACAGAAGCCAGTCTGGAGCATGGTGTGCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCTGAGTTCAGATCACAGAAGCCAGTCTGGAGCATGGTGTGCACC  150

seq1  TGGAATCCCGGTACTGAGGCCGGAGGATTTCTGAGGTTTTTAGACAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCCCGGTACTGAGGCCGGAGGATTTCTGAGGTTTTTAGACAGCTT  200

seq1  AGGCAGTGTAGCCAGGCAATAGCAAACTCCAGTCTGGTGTAGGAGAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTGTAGCCAGGCAATAGCAAACTCCAGTCTGGTGTAGGAGAGACC  250

seq1  ATCTTGAGGGGATAAAGAAGAGTGATCATGGACATCTGACATCTGCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAGGGGATAAAGAAGAGTGATCATGGACATCTGACATCTGCCTCT  300

seq1  GGCCCCCATGCACAGCCCCACGGGGACGAACAGATCTCCACTCCCAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCCATGCACAGCCCCACGGGGACGAACAGATCTCCACTCCCAGACA  350

seq1  CTTCTTTTACTTCACTTTATTTTTTGAGACACGGTCTTATAGGTCTAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTACTTCACTTTATTTTTTGAGACACGGTCTTATAGGTCTAATG  400

seq1  TAGACTAGGACTCTTTCTGTAGACAAGGTTATCTTCTAACGCACAGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAGGACTCTTTCTGTAGACAAGGTTATCTTCTAACGCACAGACAT  450

seq1  TGGACTTCCTCAGCCTCCCAGTGCCGAGACAGTGCCGAGACAGAACGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTCCTCAGCCTCCCAGTGCCGAGACAGTGCCGAGACAGAACGTGA  500

seq1  ACCCCACCGTATCTGGCTTCAAACACTTTTGTTTTGTTGTTCCTACACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACCGTATCTGGCTTCAAACACTTTTGTTTTGTTGTTCCTACACAG  550

seq1  CATATGGTCTCAAGCAGCCCAGGCTAGCCCGAAACATGAACATACAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGTCTCAAGCAGCCCAGGCTAGCCCGAAACATGAACATACAGATG  600

seq1  GGGAAGAGTTTGAACTCCTGATCCCATACCTCCAATCACCAAACACAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGTTTGAACTCCTGATCCCATACCTCCAATCACCAAACACAGTT  650

seq1  TCCAGGCCCACACCACCACCATGCCAATGTTTAGAAGGCTACTTATTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCCCACACCACCACCATGCCAATGTTTAGAAGGCTACTTATTTGT  700

seq1  TCATTTGTTTATGTACGTAGTTTTCTGAGACAAGGTTTAAAGGTACTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTTTATGTACGTAGTTTTCTGAGACAAGGTTTAAAGGTACTAGA  750

seq1  TAGGATATAAGGTAACCCTACTATCCCACTCTCCATTGAGGCTGCTGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATATAAGGTAACCCTACTATCCCACTCTCCATTGAGGCTGCTGCAT  800

seq1  ATTAGGAGTTAAGAAGTGTATAGAAAGCCGGGCGTGGTGGCCCACGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGAGTTAAGAAGTGTATAGAAAGCCGGGCGTGGTGGCCCACGCCTT  850

seq1  TAATCCCAGCACTCGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCACTCGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGGC  900

seq1  CAGCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGGGCTATACAGAGAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGGGCTATACAGAG-A  949

seq1  ACCCTGTCTCGAAAAAAACAAAAAACAAACAAACAAAAAAAAAAACCAAA  1000
      |||||||||||||||||   |||||||||| |||||| ||||||  | ||
seq2  ACCCTGTCTCGAAAAAA--CAAAAACAAAC-AACAAATAAAAAA--CCAA  994

seq1  ACAAAACAAAAAAAACCAAGAAGTGTATAG-AAGGGTTGGAGAGATG-GC  1048
      || || |||||||   | ||||||| |||| |||||||||||||| | ||
seq2  ACGAACCAAAAAA---CCAGAAGTG-ATAGAAAGGGTTGGAGAGAAGTGC  1040

seq1  TCAGTGGT  1056
      ||||||||
seq2  TCAGTGGT  1048