BAC Information

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BAC

Clone NameB6Ng01-136B07
Chromosome9 (Build37)17 (Build37)
Map Location 6,238,741 - 6,239,94566,054,003 - 66,054,055
singlet/doubletsingletsinglet
Overlap genePdgfd
Upstream geneCasp1, Casp4, Casp12, LOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037
Downstream geneDdi1, EG664919, LOC100039400, LOC100039418, EG547034, Dync2h1, LOC100039658, Dcun1d5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136B07.bB6Ng01-136B07.g
ACCDH935956DH935957
length1,215581
definitionDH935956|Mus musculus domesticus DNA, BAC clone: B6Ng01-136B07, 5' end.DH935957|Mus musculus domesticus DNA, BAC clone: B6Ng01-136B07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,238,741 - 6,239,945)(66,054,003 - 66,054,055)
sequence
gaattcacccagcaaggcagctgattccttaggggtgaaaggagagaggt
gctgtgaattaaaacaatctctttcagccttgggcccaggttcatgtatg
tgtaaaaagtggacagacatcattttacaaatatcttttcagttgaaaat
tttaaaaatttaaatcacactgagaattaatttttctttgttaaaaaatt
taatgcttaacaacgcagtgagtcagctgtgaaatattttcttatatttt
catgggataggagtaataaggtccataatttatatctgaggaaaggcatg
atgtatttcatccctgtagccattctgtatttgtgcatggaccacacaga
actaatgctgcagaaagtgcctgaggaatgcgaggaggctgagagcacag
agcacatgaagggggtctgaatgagtgaaagacattcatcactgcagcag
aagactgacatctgcactctgcttgtgtagaaagattgacaatctgcctc
cagtggatcagttcccacagcttgcttaaaggttcactggcaatattctt
ccagaagcatcaagctaaaacatagagagcctccactactgatgcaataa
ataattatatgtctatatataaccaaaaactccataatcttgattctaat
ttattgtgaaattagcaccatattgagaagatgacctaaaatctagggac
ttgtgggtgcaacacatcatgggaattgaataagctattagataaaattg
caagtcttatctgttagggtagagatgaatttggctgacaaaaaaagaga
agttaatatcatataattgtctctaacaatataacaaattgatatagtaa
tacaagtaaaccttacatctacatacaatcattatgtaacaatatcatgt
aacatcagctcgtaaaataaagatggcttttttgttcaaagatgaaggag
aactgaagtgtagaaagaggtctatttccacatgctaaggatcaagtgaa
gattagagtgcaaggtcatctcctaagaatcccacaagctcttacacaat
ctagagcttctagatgtctgacaagaacatgggtttctcaccttggttct
gcaagcttcttcatgtttacaattggcccctaaataatcattgaacatac
caataagctctaggagagaggtcttcttctgtgttgaccttagtttgtta
aggtcatgtgtgcac
gaattcaatttccagcagccacatgatggctaaccaaatctctacaggga
ttcctcttctggtgcatctgaagacagatacagcatacacatatacatta
aataaatgataaaaaataatgttaaaaagctggacttcaacaacaataga
aacatcagaaaggatacaaagtcatggaaactggagagctctcacctcaa
tgatccctgggttagcgaagaattaaagaaagatattaaagactacctag
aatttaaagaaaatgaaggcacagcatatccaaacttacggagcacaatg
aaagcagagctaaaaggaaaggccatagcactaagtagcttcatacagaa
attagaggaaacagaaattagagatttctcacactaccaacttaaaagta
cacctgaaagctctaggaaaaaagaagcaaatgttcccaagaggagtaga
taacaggaaataataaaacttaggactgaaatcaataaattagaaactac
aaagaatcaccaaaccaagagcttgggtttttgttttggtttggttttgg
gttttgggttttggattttgtttgtttgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_6238741_6239945
seq2: B6Ng01-136B07.b_47_1261 (reverse)

seq1  GTGCACACATGAACCTGACAAAACTAAGTACA--ACAGAAG--GACCTCT  46
      ||||||||||| |||| |  ||||||||  ||  |||||||  |||||||
seq2  GTGCACACATG-ACCTTAACAAACTAAGGTCAACACAGAAGAAGACCTCT  49

seq1  -TCAT-GAGC-TATT-GTATGATCAATGATAATTAGGGGGCCAA-TGTAA  91
       || | |||| |||| ||||| |||||||| |||  |||||||| |||||
seq2  CTCCTAGAGCTTATTGGTATGTTCAATGATTATTTAGGGGCCAATTGTAA  99

seq1  ACATGGAGAAGC-TGCAGAACC-AGGTGAGAAA-CCATTGTCTTGTCAGA  138
      ||||| |||||| ||||||||| |||||||||| ||||  ||||||||||
seq2  ACATGAAGAAGCTTGCAGAACCAAGGTGAGAAACCCATGTTCTTGTCAGA  149

seq1  CATCTAG-AGCTCTAGATTGTGTAAGAGC-TGTGGGA-TCTTAGGAGATG  185
      ||||||| ||||||||||||||||||||| ||||||| ||||||||||||
seq2  CATCTAGAAGCTCTAGATTGTGTAAGAGCTTGTGGGATTCTTAGGAGATG  199

seq1  ACCTTGCACTCTTAATCTTCACTTGATCCTTAGCATGTGGAAATAGACCT  235
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCACTC-TAATCTTCACTTGATCCTTAGCATGTGGAAATAGACCT  248

seq1  CTTTTCTACACTTCAGTTTCTCCTTCATCTTTGAACAAAAAAGCCATCTT  285
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  C-TTTCTACACTTCAG-TTCTCCTTCATCTTTGAACAAAAAAGCCATCTT  296

seq1  TATTTTACGAGCCTGATGTTACATGATATTGTTACATAATGATTGTATGT  335
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACGAG-CTGATGTTACATGATATTGTTACATAATGATTGTATGT  345

seq1  AGATGTAAGGTTTACTTGTATTACTATATCAATTTGTTATATTGTTAGAG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAAGGTTTACTTGTATTACTATATCAATTTGTTATATTGTTAGAG  395

seq1  ACAATTATATGATATTAACTTCTCTTTTTTTGTCAGCCAAATTCATCTCT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTATATGATATTAACTTCTCTTTTTTTGTCAGCCAAATTCATCTCT  445

seq1  ACCCTAACAGATAAGACTTGCAATTTTATCTAATAGCTTATTCAATTCCC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAACAGATAAGACTTGCAATTTTATCTAATAGCTTATTCAATTCCC  495

seq1  ATGATGTGTTGCACCCACAAGTCCCTAGATTTTAGGTCATCTTCTCAATA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTGTTGCACCCACAAGTCCCTAGATTTTAGGTCATCTTCTCAATA  545

seq1  TGGTGCTAATTTCACAATAAATTAGAATCAAGATTATGGAGTTTTTGGTT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTAATTTCACAATAAATTAGAATCAAGATTATGGAGTTTTTGGTT  595

seq1  ATATATAGACATATAATTATTTATTGCATCAGTAGTGGAGGCTCTCTATG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAGACATATAATTATTTATTGCATCAGTAGTGGAGGCTCTCTATG  645

seq1  TTTTAGCTTGATGCTTCTGGAAGAATATTGCCAGTGAACCTTTAAGCAAG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCTTGATGCTTCTGGAAGAATATTGCCAGTGAACCTTTAAGCAAG  695

seq1  CTGTGGGAACTGATCCACTGGAGGCAGATTGTCAATCTTTCTACACAAGC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGAACTGATCCACTGGAGGCAGATTGTCAATCTTTCTACACAAGC  745

seq1  AGAGTGCAGATGTCAGTCTTCTGCTGCAGTGATGAATGTCTTTCACTCAT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCAGATGTCAGTCTTCTGCTGCAGTGATGAATGTCTTTCACTCAT  795

seq1  TCAGACCCCCTTCATGTGCTCTGTGCTCTCAGCCTCCTCGCATTCCTCAG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCCCCTTCATGTGCTCTGTGCTCTCAGCCTCCTCGCATTCCTCAG  845

seq1  GCACTTTCTGCAGCATTAGTTCTGTGTGGTCCATGCACAAATACAGAATG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTCTGCAGCATTAGTTCTGTGTGGTCCATGCACAAATACAGAATG  895

seq1  GCTACAGGGATGAAATACATCATGCCTTTCCTCAGATATAAATTATGGAC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGGGATGAAATACATCATGCCTTTCCTCAGATATAAATTATGGAC  945

seq1  CTTATTACTCCTATCCCATGAAAATATAAGAAAATATTTCACAGCTGACT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTACTCCTATCCCATGAAAATATAAGAAAATATTTCACAGCTGACT  995

seq1  CACTGCGTTGTTAAGCATTAAATTTTTTAACAAAGAAAAATTAATTCTCA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCGTTGTTAAGCATTAAATTTTTTAACAAAGAAAAATTAATTCTCA  1045

seq1  GTGTGATTTAAATTTTTAAAATTTTCAACTGAAAAGATATTTGTAAAATG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATTTAAATTTTTAAAATTTTCAACTGAAAAGATATTTGTAAAATG  1095

seq1  ATGTCTGTCCACTTTTTACACATACATGAACCTGGGCCCAAGGCTGAAAG  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTCCACTTTTTACACATACATGAACCTGGGCCCAAGGCTGAAAG  1145

seq1  AGATTGTTTTAATTCACAGCACCTCTCTCCTTTCACCCCTAAGGAATCAG  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTTTTAATTCACAGCACCTCTCTCCTTTCACCCCTAAGGAATCAG  1195

seq1  CTGCCTTGCTGGGTGAATTC  1205
      ||||||||||||||||||||
seq2  CTGCCTTGCTGGGTGAATTC  1215

seq1: chr17_66054003_66054055
seq2: B6Ng01-136B07.g_595_648

seq1  TTTTTGTTTTGTTTTGGTTTTTGGGTTTTGGGTTTT--TTTTTGTTTGTT  48
      ||||||||||| ||||| ||||||||||||||||||   |||||||||||
seq2  TTTTTGTTTTGGTTTGG-TTTTGGGTTTTGGGTTTTGGATTTTGTTTGTT  49

seq1  TGTTT  53
      |||||
seq2  TGTTT  54