BAC Information

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BAC

Clone NameB6Ng01-136H10
Chromosome17 (Build37)
Map Location 46,016,244 - 46,154,186
singlet/doubletdoublet
Overlap geneVegfa
Upstream geneSupt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363
Downstream geneMrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136H10.bB6Ng01-136H10.g
ACCDH936230DH936231
length1,0391,078
definitionDH936230|Mus musculus domesticus DNA, BAC clone: B6Ng01-136H10, 5' end.DH936231|Mus musculus domesticus DNA, BAC clone: B6Ng01-136H10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,153,149 - 46,154,186)(46,016,244 - 46,017,324)
sequence
gaattctacatactaaatctctctccttttttaattttaatatttgttat
catttatttattggtgctactgtttatccgtaataattgtgggggaaaaa
gatattaacatcacgtctttgtctctagagcagttttccgagatattccg
tagtacatatttatttttaaacagcaacaaagaaatacagatatatctta
aaaaaaaaagcattttgtattaaagaattgaattctgatctcaaagctct
ccctggtctctccttctctcctgggccctcctgtctcgctttccctcctc
ctttggggtacatagtttttgtcttaggtttgagaagcagtccctggagt
agaatatggggtgacccatccattcctgggcggaggggagatggctcctt
tgccaagggtcctcacactacgtggtactctgttccttgtcagacaagga
tggggccatgtctccaggtgctaactggagatcggagagagctgttggct
gcagctggccaggatttggccatgccggggacatgggaggctgtgagccc
agcatgcagtttacttctgggtgctaaatggaagagtccagtaaaaagag
tcttgcccatgggattccattccgctttgtgcaagcctttcggacccatt
cttgtcccaggccactcggaccctgtttggatctttgatataatagcatt
gtatccaaatctgcttctagaatcttactcctcatgataacaaagggccg
gggaaacacagggctggctagtatggttctagtaccgatagactatgcca
cctgcaagagcaggggaggggcacaaagctttagttccacaagttaggaa
aatgcttcagcctttttcaggggcttttcgctcggcctggaggctcatgg
gacacatgttgatttctcatgataatgacctgtggaccacctctttggag
atgggagttgtggatattgaaccctaggcagaagggctgaccaagggcct
ggaattggtactctggcaggggtggggatgggacaaaac
gaattcaggtcattacattaagccttgatgacaggcatctttacccactg
gccatcctgtaggcccagagagggggaatttacataaacgaatacctaat
gagccctttcatgccctagtccctgtgtggggatgatctcacacccctgc
ctgtccccagcgagatcctcatgtctgatgaactgtctgctctcaccact
ccctgagggaagatgaccaacaactctcccagcaatcttgacattcttag
cagatgctaaagatggaccttctgagccaagccaaaccctcaaaaagccc
tgtaagcccctcccatatgtccccagggttgtcatggtccggaaggcagc
agccagtttaggtctgagacagattatctggatccctgcctgagtattca
gaagacacaccccctctagtgtctagggcttcttccagggtggtgggctg
gctcctttacagtggctgctgtactatgctcctgggactcaaaaccaaca
ccttgccctcattagtgcaatgttctagtcagcggtcttagggagatgtg
atgatgttaattatgtactgatttatttaattcctgctcttgtaaaatga
gtgctgcttgccttccttcctttccccaggggcttctaaattcctggggg
catggcaggggctggggctgccagcagcaaagatagtgggctggactcag
aggtcacaaaaaactagagtcatttgctagctccagtgaccctgagtaac
cttccttgagcccaggattgggtaaggattatgagtttggcgctgggcct
gccctgaagggaagctctcagtagatctctgcctctgttatcattattgt
ttatttttttttttagtctctcgacggaagatcatcttcctttggctcca
ttttctgtcctggacagggaatccagtagaattttctgcaatgatagagg
gcttcatatctgcgctgttcacatggttgccgtttgccctgtgctttgag
ccagctgaggcactgaatggcagccatgtgcaagagatcagaagagtcac
ctggtctctgtggagaccggccatgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_46153149_46154186
seq2: B6Ng01-136H10.b_46_1084 (reverse)

seq1  GTTTTGTCCCAATCCCCACCCCTTGCCAGAGTACCACTTCCAGGCCCTGG  50
      |||||||||| ||||||||||| ||||||||||||| ||||||||||| |
seq2  GTTTTGTCCC-ATCCCCACCCC-TGCCAGAGTACCAATTCCAGGCCCTTG  48

seq1  TTCAGCCCTTCTGCCTAGGGTTCAATATCCACAACTCCCATCTCCAAAGA  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCCTTCTGCCTAGGGTTCAATATCCACAACTCCCATCTCCAAAGA  98

seq1  GGTGGTCCACAGGTCA-TATCATGAGAAATC-ACATGTGTCCCATGAGCC  148
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  GGTGGTCCACAGGTCATTATCATGAGAAATCAACATGTGTCCCATGAGCC  148

seq1  TCCAGGCCGAGCGAGAAGCCCCTG-AGAAGGCTGAAGCATTTTCCTAACT  197
      |||||||||||||| ||||||||| | |||||||||||||||||||||||
seq2  TCCAGGCCGAGCGAAAAGCCCCTGAAAAAGGCTGAAGCATTTTCCTAACT  198

seq1  TGTGGAACTAAAGCTTTGTGCCCCTCCCCTGCTCTTGCAGGTGGCATAGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAACTAAAGCTTTGTGCCCCTCCCCTGCTCTTGCAGGTGGCATAGT  248

seq1  CTATCGGTACTAGAACCATACTAGCCAGCCCTGTGTTTCCCCGGCCCTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCGGTACTAGAACCATACTAGCCAGCCCTGTGTTTCCCCGGCCCTTT  298

seq1  GTTATCATGAGGAGTAAGATTCTAGAAGCAGATTTGGATACAATGCTATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCATGAGGAGTAAGATTCTAGAAGCAGATTTGGATACAATGCTATT  348

seq1  ATATCAAAGATCCAAACAGGGTCCGAGTGGCCTGGGACAAGAATGGGTCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAAGATCCAAACAGGGTCCGAGTGGCCTGGGACAAGAATGGGTCC  398

seq1  GAAAGGCTTGCACAAAGCGGAATGGAATCCCATGGGCAAGACTCTTTTTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTTGCACAAAGCGGAATGGAATCCCATGGGCAAGACTCTTTTTA  448

seq1  CTGGACTCTTCCATTTAGCACCCAGAAGTAAACTGCATGCTGGGCTCACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTCTTCCATTTAGCACCCAGAAGTAAACTGCATGCTGGGCTCACA  498

seq1  GCCTCCCATGTCCCCGGCATGGCCAAATCCTGGCCAGCTGCAGCCAACAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCATGTCCCCGGCATGGCCAAATCCTGGCCAGCTGCAGCCAACAG  548

seq1  CTCTCTCCGATCTCCAGTTAGCACCTGGAGACATGGCCCCATCCTTGTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCGATCTCCAGTTAGCACCTGGAGACATGGCCCCATCCTTGTCT  598

seq1  GACAAGGAACAGAGTACCACGTAGTGTGAGGACCCTTGGCAAAGGAGCCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGAACAGAGTACCACGTAGTGTGAGGACCCTTGGCAAAGGAGCCA  648

seq1  TCTCCCCTCCGCCCAGGAATGGATGGGTCACCCCATATTCTACTCCAGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTCCGCCCAGGAATGGATGGGTCACCCCATATTCTACTCCAGGG  698

seq1  ACTGCTTCTCAAACCTAAGACAAAAACTATGTACCCCAAAGGAGGAGGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTCTCAAACCTAAGACAAAAACTATGTACCCCAAAGGAGGAGGGA  748

seq1  AAGCGAGACAGGAGGGCCCAGGAGAGAAGGAGAGACCAGGGAGAGCTTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGAGACAGGAGGGCCCAGGAGAGAAGGAGAGACCAGGGAGAGCTTTG  798

seq1  AGATCAGAATTCAATTCTTTAATACAAAATGCTTTTTTTTTTAAGATATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGAATTCAATTCTTTAATACAAAATGCTTTTTTTTTTAAGATATA  848

seq1  TCTGTATTTCTTTGTTGCTGTTTAAAAATAAATATGTACTACGGAATATC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTTCTTTGTTGCTGTTTAAAAATAAATATGTACTACGGAATATC  898

seq1  TCGGAAAACTGCTCTAGAGACAAAGACGTGATGTTAATATCTTTTTCCCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAAACTGCTCTAGAGACAAAGACGTGATGTTAATATCTTTTTCCCC  948

seq1  CACAATTATTACGGATAAACAGTAGCACCAATAAATAAATGATAACAAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTATTACGGATAAACAGTAGCACCAATAAATAAATGATAACAAAT  998

seq1  ATTAAAATTAAAAAAGGAGAGAGATTTAGTATGTAGAATTC  1038
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATTAAAAAAGGAGAGAGATTTAGTATGTAGAATTC  1039

seq1: chr17_46016244_46017324
seq2: B6Ng01-136H10.g_67_1144

seq1  GAATTCAGGTCATTACATTAAGCCTTGATGACAGGCATCTTTACCCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCATTACATTAAGCCTTGATGACAGGCATCTTTACCCACTG  50

seq1  GCCATCCTGTAGGCCCAGAGAGGGGGAATTTACATAAACGAATACCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCTGTAGGCCCAGAGAGGGGGAATTTACATAAACGAATACCTAAT  100

seq1  GAGCCCTTTCATGCCCTAGTCCCTGTGTGGGGATGATCTCACACCCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTTTCATGCCCTAGTCCCTGTGTGGGGATGATCTCACACCCCTGC  150

seq1  CTGTCCCCAGCGAGATCCTCATGTCTGATGAACTGTCTGCTCTCACCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCCAGCGAGATCCTCATGTCTGATGAACTGTCTGCTCTCACCACT  200

seq1  CCCTGAGGGAAGATGACCAACAACTCTCCCAGCAATCTTGACATTCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGGGAAGATGACCAACAACTCTCCCAGCAATCTTGACATTCTTAG  250

seq1  CAGATGCTAAAGATGGACCTTCTGAGCCAAGCCAAACCCTCAAAAAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCTAAAGATGGACCTTCTGAGCCAAGCCAAACCCTCAAAAAGCCC  300

seq1  TGTAAGCCCCTCCCATATGTCCCCAGGGTTGTCATGGTCCGGAAGGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCCCCTCCCATATGTCCCCAGGGTTGTCATGGTCCGGAAGGCAGC  350

seq1  AGCCAGTTTAGGTCTGAGACAGATTATCTGGATCCCTGCCTGAGTATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTTTAGGTCTGAGACAGATTATCTGGATCCCTGCCTGAGTATTCA  400

seq1  GAAGACACACCCCCTCTAGTGTCTAGGGCTTCTTCCAGGGTGGTGGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACACACCCCCTCTAGTGTCTAGGGCTTCTTCCAGGGTGGTGGGCTG  450

seq1  GCTCCTTTACAGTGGCTGCTGTACTATGCTCCTGGGACTCAAAACCAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTTACAGTGGCTGCTGTACTATGCTCCTGGGACTCAAAACCAACA  500

seq1  CCTTGCCCTCATTAGTGCAATGTTCTAGTCAGCGGTCTTAGGGAGATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCCTCATTAGTGCAATGTTCTAGTCAGCGGTCTTAGGGAGATGTG  550

seq1  ATGATGTTAATTATGTACTGATTTATTTAATTCCTGCTCTTGTAAAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTTAATTATGTACTGATTTATTTAATTCCTGCTCTTGTAAAATGA  600

seq1  GTGCTGCTTGCCTTCCTTCCTTTCCCCAGGGGCTTCTAAATTCCTGGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCTTGCCTTCCTTCCTTTCCCCAGGGGCTTCTAAATTCCTGGGGG  650

seq1  CATGGCAGGGGCTGGGGCTGCCAGCAGCAAAGATAGTGGGCTGGACTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAGGGGCTGGGGCTGCCAGCAGCAAAGATAGTGGGCTGGACTCAG  700

seq1  AGGTCACAAAAAACTAGAGTCATTTGCTAGCTCCAGTGACCCTGAGTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACAAAAAACTAGAGTCATTTGCTAGCTCCAGTGACCCTGAGTAAC  750

seq1  C-TCCTTGAGCCCAGGATTGGGTAAGGATTATGAGTTTGGCGCTGGGCCT  799
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGAGCCCAGGATTGGGTAAGGATTATGAGTTTGGCGCTGGGCCT  800

seq1  GCCCTGAAGGGAAGCTCTCAGTAGATCTCTGCCTCTGTTATCATTATTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAAGGGAAGCTCTCAGTAGATCTCTGCCTCTGTTATCATTATTGT  850

seq1  TCA-TTATTATTTTAGTCTCTCGACGGAAAGATCATCT--CCTTCGCTCC  896
      | | || || ||||||||||||||||| ||||||||||  | || |||||
seq2  TTATTTTTTTTTTTAGTCTCTCGACGG-AAGATCATCTTCCTTTGGCTCC  899

seq1  A-TGTCTGTCCTGGACAAGGAATCCAGTAGAATTTCCTGCAATGAATAGA  945
      | | ||||||||||||| ||||||||||||||||| |||||||| |||||
seq2  ATTTTCTGTCCTGGACAGGGAATCCAGTAGAATTTTCTGCAATG-ATAGA  948

seq1  GGGCTTCAGTATCTGCGCTGTTCAACATGGTGGCCGTTTGCCCCTGTGCT  995
      |||||||| |||||||||||||| ||||||| |||||||| |||||||||
seq2  GGGCTTCA-TATCTGCGCTGTTC-ACATGGTTGCCGTTTG-CCCTGTGCT  995

seq1  TTGAG-CAGCTGAGGCACTGAATGGCAGCCATGTGCCAAAGAGATTCAGA  1044
      ||||| ||||||||||||||||||||||||||||||  |||||| |||||
seq2  TTGAGCCAGCTGAGGCACTGAATGGCAGCCATGTGC--AAGAGA-TCAGA  1042

seq1  AGAGTCACCTGGGTCCTGTGGAGACCGGGCCATGAGT  1081
      ||||||||||||   ||||||||||| ||||||||||
seq2  AGAGTCACCTGGTCTCTGTGGAGACC-GGCCATGAGT  1078