BAC Information

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BAC

Clone NameB6Ng01-136M10
Chromosome17 (Build37)
Map Location 7,150,630 - 7,299,842
singlet/doubletdoublet
Overlap geneRshl2b, Tagap1, Rnaset2b, Gm1604
Upstream geneTulp4, EG433058, Tmem181, LOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488, LOC100040500, LOC100040531, LOC100040525, LOC100040563, LOC100040546, LOC100040536, LOC100040556, LOC100040603, LOC100040596, LOC100040631, LOC100040616, Sytl3, Vil2, LOC100040654, 1700122H20Rik
Downstream geneRps6ka2, LOC625031, Tcp10b, LOC100038857, LOC667055, 5830477G23Rik, LOC625102, Fndc1, EG634588, LOC100040748, LOC100040760, LOC667102, Tagap, Rshl2a, LOC100040822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136M10.bB6Ng01-136M10.g
ACCDH936460DH936461
length1,1911,133
definitionDH936460|Mus musculus domesticus DNA, BAC clone: B6Ng01-136M10, 5' end.DH936461|Mus musculus domesticus DNA, BAC clone: B6Ng01-136M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,150,630 - 7,151,853)(7,298,688 - 7,299,842)
sequence
gaattctcttagttgaaatacttgggaagagaagtatttccgattatttt
ttctcagtttggaatatttgcatgtaaatgactcaaatgtaagcatgctt
catacatgcctacatacatagcctggagataattacatacagtttttttt
aactgtacctgtattctgactgtgacaagtcaccataatatcttatgtgg
aattttctgctgtggtattgtgtcactcaaagatctttaggtttggggac
tggcaggattgctcaagggttaaaagcccacactgctcttgtagaggagt
agagtttggttcccagcactcatggttcccagcactcattggttcccagc
agctcacaaccatctgcacctccagctccgggggttctgatggcctcttc
tggggtccactgacacctgcaccccatgcacacacacagacattcacata
gatatctaaaaagcttcaggcttccagattagggatgtccattctgttaa
aacttcttgtctgtaaacaagagaacctgtattcaaatgctttctttcca
ggtttataatttattgtgtcacaaaaaggcagaagcccttaaaccacatc
tggcttgtactgtttttaaatttttaactttctcagaggaaaaaaaagag
atattcccatttctgtataggtgaaattggcttctcatatctaaatataa
tactgggatgcagcccagtcacatatctaatcaagataacttgtaatttt
gctccctttaaacacagttatacagtctagccatgtattacctggaaaac
ttatttactacggtcaaggtcgatatagaaacttttgaacgagactggac
taaaggagggactttgtgggagactggactaaaggagggactttgtggaa
cggaggcatactgacctagagataatgactctgtgcatgtggctatacag
tcaatcaccagcaaagttagctaacgacacccccagaatagctcacttcc
aaggttatcatgttagattaaggtctcataagctacttgtacacttcatg
aacatttgctatgggtctgcatgcttgaatacacagaaagttagtcacat
gtactcaacataaaaatctacttgttcaaaaaaaaaaaaaaatcgacttc
ttggcttctgcccttggatacgtcgttccagcctggctgag
gaattcagccttatggtatgactatagtgaatatgaatacattcagcctt
atggtgctgactaaggtcagacatgaggacaatgcttgccagggagcagg
ggttactcaaatccctttttaaagacaggaagacttagtcaagcagagcg
gatggacttccctcaagggtgaaatggggatcaaaactcaggtgtcccca
acacctgcacacctgccaggatcttctacaattaactgacggtgtcctgt
ttattattaatttctcaggaaaaactgtgccagagagatacacactcatt
tttctgattttgtcttcttttgattcaagggtcttgctctgtagcccagt
ttagctgtgaattcatgattctcctgccccagcctcttgagtcttgactg
gctgcaagtgtgtgcatttgcatatgtcagatgtgcactctgggtaattt
gacctgctcttggggttttttgtattctgccacatgatgaacatggtacg
aacagacatgaggagacatgagcagacataaacagacaagtcccatgcat
gcctctgtgccctgttctgtttgctgtgaactttggttgcccctttgggc
tccaagatttcttctgcagctcagtcactaagaaggcacctgtatgtagc
accaaagacaaactcctcttctcctacttcatttctaggcagtgccctag
tcacccacggcatggggccagatgtcctgtatgtgatatgaactctccag
actggctccccttctttttggacacagtttcacccctgaactctactaac
acccatcaagcagacaagtgtccctgggatgggctctggtgacagtatca
catcaactgactgttctttgggactaaactccacataaataaaattttag
ttataactccagaaattagtatcacaagacccacatattctcgaaaacat
gcatagttcttggacattttgtgcaacatggtgaacacaaatgtcatgtc
ttcagataaaacaacaacaaaccacatctctttgttgactcagttctgca
ttgtccctcgtattctacgcgaacgcatgctgtaaacagaccactcctgg
atcagctcatgcaagccatgccaggggggtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_7150630_7151853
seq2: B6Ng01-136M10.b_47_1237

seq1  GAATTCTCTTAGTTGAAATACTTGGGAAGAGAAGTATTTCCGATTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAGTTGAAATACTTGGGAAGAGAAGTATTTCCGATTATTTT  50

seq1  TTCTCAGTTTGGAATATTTGCATGTAAATGACTCAAATGTAAGCATGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTTTGGAATATTTGCATGTAAATGACTCAAATGTAAGCATGCTT  100

seq1  CATACATGCCTACATACATAGCCTGGAGATAATTACATACAGTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGCCTACATACATAGCCTGGAGATAATTACATACAGTTTTTTTT  150

seq1  AACTGTACCTGTATTCTGACTGTGACAAGTCACCATAATATCTTATGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTACCTGTATTCTGACTGTGACAAGTCACCATAATATCTTATGTGG  200

seq1  AATTTTCTGCTGTGGTATTGTGTCACTCAAAGATCTTTAGGTTTGGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTGCTGTGGTATTGTGTCACTCAAAGATCTTTAGGTTTGGGGAC  250

seq1  TGGCAGGATTGCTCAAGGGTTAAAAGCCCACACTGCTCTTGTAGAGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGATTGCTCAAGGGTTAAAAGCCCACACTGCTCTTGTAGAGGAGT  300

seq1  AGAGTTTGGTTCCCAGCACTCATGGTTCCCAGCACTCATTGGTTCCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGGTTCCCAGCACTCATGGTTCCCAGCACTCATTGGTTCCCAGC  350

seq1  AGCTCACAACCATCTGCACCTCCAGCTCCGGGGGTTCTGATGGCCTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACAACCATCTGCACCTCCAGCTCCGGGGGTTCTGATGGCCTCTTC  400

seq1  TGGGGTCCACTGACACCTGCACCCCATGCACACACACAGACATTCACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCCACTGACACCTGCACCCCATGCACACACACAGACATTCACATA  450

seq1  GATATCTAAAAAGCTTCAGGCTTCCAGATTAGGGATGTCCATTCTGTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTAAAAAGCTTCAGGCTTCCAGATTAGGGATGTCCATTCTGTTAA  500

seq1  AACTTCTTGTCTGTAAACAAGAGAACCTGTATTCAAATGCTTTCTTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTGTCTGTAAACAAGAGAACCTGTATTCAAATGCTTTCTTTCCA  550

seq1  GGTTTATAATTTATTGTGTCACAAAAAGGCAGAAGCCCTTAAACCACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATAATTTATTGTGTCACAAAAAGGCAGAAGCCCTTAAACCACATC  600

seq1  TGGCTTGTACTGTTTTTAAATTTTTAACTTTCTCAGAGGAAAAAAAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGTACTGTTTTTAAATTTTTAACTTTCTCAGAGGAAAAAAAAGAG  650

seq1  ATATTCCCATTTCTGTATAGGTGAAATTGGCTTCTCATATCTAAATATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCCATTTCTGTATAGGTGAAATTGGCTTCTCATATCTAAATATAA  700

seq1  TACTGGGATGCAGCCCAGTCACATATCTAATCAAGATAACTTGTAATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGATGCAGCCCAGTCACATATCTAATCAAGATAACTTGTAATTTT  750

seq1  GCTCCCTTTAAACACAGTTATACAGTCTAGCCATGTATTACCTGGAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTTTAAACACAGTTATACAGTCTAGCCATGTATTACCTGGAAAAC  800

seq1  TTATTTACTACGGTCAAGGTCGATATAGAAACTTTTGAACGAGACTGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACTACGGTCAAGGTCGATATAGAAACTTTTGAACGAGACTGGAC  850

seq1  T-AAGGAGGGACTTTGTGGGAGACTGGACT-AAGGAGGGACTTTGTGGAA  898
      | |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAAAGGAGGGACTTTGTGGGAGACTGGACTAAAGGAGGGACTTTGTGGAA  900

seq1  CGGAGGCATACTGACCTAGAGATAATGACTCTGTGCATGTGGCTATACAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGCATACTGACCTAGAGATAATGACTCTGTGCATGTGGCTATACAG  950

seq1  TCAATCACCAGCAAAGTTAGCTAACGACACCCCCAGAATAAGCTCACTTC  998
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCAATCACCAGCAAAGTTAGCTAACGACACCCCCAGAAT-AGCTCACTTC  999

seq1  CAAGGGTTATCATGGTTTTAGGATTAAGGGTCTCAATTAAGCTACTTTGT  1048
      ||| ||||||||||   ||| |||||| |||||||  |||||||| ||||
seq2  CAA-GGTTATCATG---TTA-GATTAA-GGTCTCA--TAAGCTAC-TTGT  1040

seq1  AACCACTTTCATGAAACATTTGCTATGGTTTCTGCATTGCTTTGATACAC  1098
      |  ||| |||||| ||||||||||||||  |||||| |||||  ||||||
seq2  A--CAC-TTCATG-AACATTTGCTATGG-GTCTGCA-TGCTTGAATACAC  1084

seq1  AGATAAGTTAGTCAACATGTTACTTCAACATAAAAAAAATCAACTTGTTA  1148
      ||| ||||||||| ||||| ||| |||||||   ||||||| ||||||| 
seq2  AGA-AAGTTAGTC-ACATG-TAC-TCAACAT---AAAAATCTACTTGTT-  1126

seq1  CAAAAAAAAAAAAAAAAATCAGACATCCTATTGCTTCTGCCTCTGGGATA  1198
         ||||||||||||||||| ||| ||   | ||||||||| || |||| 
seq2  --CAAAAAAAAAAAAAAATC-GACTTC--TTGGCTTCTGCC-CTTGGAT-  1169

seq1  ACAGGTCTGTCTCAGGCCTGGCTGAG  1224
        | ||| || ||  |||||||||||
seq2  --ACGTC-GT-TCCAGCCTGGCTGAG  1191

seq1: chr17_7298688_7299842
seq2: B6Ng01-136M10.g_68_1200 (reverse)

seq1  TTTACACCCCTGTGCATGGCTCTGCACTGAGCTGATCAGAGAGGTGGTCT  50
      ||||| |||||| |||||||| |||| ||||||||||  ||  |||||||
seq2  TTTACCCCCCTG-GCATGGCT-TGCA-TGAGCTGATC-CAGGAGTGGTCT  46

seq1  TGTTTTACAGCATGCTGTTCTGCCGTAGAATACGATGGGACAATGCAGAA  100
         |||||||||||| ||||   |||||||||||| ||||||||||||||
seq2  --GTTTACAGCATGC-GTTC--GCGTAGAATACGA-GGGACAATGCAGAA  90

seq1  CTGGGTCAACAAAGAGATGGTGGTTTGTTTGTTTGTTTTTTATCTGAAGA  150
      ||| |||||||||||||| |||||||| ||||   | |||||||||||||
seq2  CTGAGTCAACAAAGAGAT-GTGGTTTG-TTGT---TGTTTTATCTGAAGA  135

seq1  CATGACATTTGTGTTCACCATGTTGCAC-AAATGTCCAAGAACTATGCAT  199
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CATGACATTTGTGTTCACCATGTTGCACAAAATGTCCAAGAACTATGCAT  185

seq1  GTTTTCGAGGAATATTGTTGGGTCTTTGTGGATACTAATTTTCTGGAGTT  249
      |||||||| ||||||   |||||| |||| |||||||| |||||||||||
seq2  GTTTTCGA-GAATAT--GTGGGTC-TTGT-GATACTAA-TTTCTGGAGTT  229

seq1  ATAACTAAAATTTTATTTATGTGGAGTTTAGTTCCAAATGAACAGTCAGT  299
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  ATAACTAAAATTTTATTTATGTGGAGTTTAGTCCCAAA-GAACAGTCAGT  278

seq1  TGAATGTGATACTGTCACCAGAGCCCATCCCAGGGACACTTGTCTGCTTG  349
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-ATGTGATACTGTCACCAGAGCCCATCCCAGGGACACTTGTCTGCTTG  327

seq1  ATGGGTGTTAGTAGAGTTCAGGGGTGAAACTGTGTCCAAAAAGAAGGGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGTTAGTAGAGTTCAGGGGTGAAACTGTGTCCAAAAAGAAGGGGA  377

seq1  GCCAGTCTGGAGAGTTCATATCACATACAGGACATCTGGCCCCATGCCGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCTGGAGAGTTCATATCACATACAGGACATCTGGCCCCATGCCGT  427

seq1  GGGTGACTAGGGCACTGCCTAGAAATGAAGTAGGAGAAGAGGAGTTTGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACTAGGGCACTGCCTAGAAATGAAGTAGGAGAAGAGGAGTTTGTC  477

seq1  TTTGGTGCTACATACAGGTGCCTTCTTAGTGACTGAGCTGCAGAAGAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGCTACATACAGGTGCCTTCTTAGTGACTGAGCTGCAGAAGAAAT  527

seq1  CTTGGAGCCCAAAGGGGCAACCAAAGTTCACAGCAAACAGAACAGGGCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGCCCAAAGGGGCAACCAAAGTTCACAGCAAACAGAACAGGGCAC  577

seq1  AGAGGCATGCATGGGACTTGTCTGTTTATGTCTGCTCATGTCTCCTCATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCATGCATGGGACTTGTCTGTTTATGTCTGCTCATGTCTCCTCATG  627

seq1  TCTGTTCGTACCATGTTCATCATGTGGCAGAATACAAAAAACCCCAAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCGTACCATGTTCATCATGTGGCAGAATACAAAAAACCCCAAGAG  677

seq1  CAGGTCAAATTACCCAGAGTGCACATCTGACATATGCAAATGCACACACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAAATTACCCAGAGTGCACATCTGACATATGCAAATGCACACACT  727

seq1  TGCAGCCAGTCAAGACTCAAGAGGCTGGGGCAGGAGAATCATGAATTCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCAGTCAAGACTCAAGAGGCTGGGGCAGGAGAATCATGAATTCAC  777

seq1  AGCTAAACTGGGCTACAGAGCAAGACCCTTGAATCAAAAGAAGACAAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAACTGGGCTACAGAGCAAGACCCTTGAATCAAAAGAAGACAAAAT  827

seq1  CAGAAAAATGAGTGTGTATCTCTCTGGCACAGTTTTTCCTGAGAAATTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAATGAGTGTGTATCTCTCTGGCACAGTTTTTCCTGAGAAATTAA  877

seq1  TAATAAACAGGACACCGTCAGTTAATTGTAGAAGATCCTGGCAGGTGTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAACAGGACACCGTCAGTTAATTGTAGAAGATCCTGGCAGGTGTGC  927

seq1  AGGTGTTGGGGACACCTGAGTTTTGATCCCCATTTCACCCTTGAGGGAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTGGGGACACCTGAGTTTTGATCCCCATTTCACCCTTGAGGGAAG  977

seq1  TCCATCCGCTCTGCTTGACTAAGTCTTCCTGTCTTTAAAAAGGGATTTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCGCTCTGCTTGACTAAGTCTTCCTGTCTTTAAAAAGGGATTTGA  1027

seq1  GTAACCCCTGCTCCCTGGCAAGCATTGTCCTCATGTCTGACCTTAGTCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCCTGCTCCCTGGCAAGCATTGTCCTCATGTCTGACCTTAGTCAG  1077

seq1  CACCATAAGGCTGAATGTATTCATATTCACTATAGTCATACCATAAGGCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATAAGGCTGAATGTATTCATATTCACTATAGTCATACCATAAGGCT  1127

seq1  GAATTC  1155
      ||||||
seq2  GAATTC  1133