BAC Information

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BAC

Clone NameB6Ng01-137J13
Chromosome17 (Build37)
Map Location 24,957,009 - 24,958,068
singlet/doubletsinglet
Overlap genenone
Upstream geneSrrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6
Downstream gene4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137J13.g
ACCDH937077
length1,049
definitionDH937077|Mus musculus domesticus DNA, BAC clone: B6Ng01-137J13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttcttggaatatctatctttttttttaaaaaaaatttatttat
ttatttatttatttatttattttatgtatatgagtacactggagctgcac
agatggttgtgagccttcatatggttgttggaaatttaattttttttttg
gacctctgctcactctggtcaactctgctcgctcattccctgcttgctct
ggcccaaagatttatttattattattcataagtacactgtagctgtctcc
agacataccagaaaagggtgtaagatctcattacagatggatttgagcca
ccatgtggatgttgggagataaactcccgaccactggaaaataggtcagt
gctcttacccaatgagcactctcactatcccaaaatattgaacattaata
taatgacatgatttagcacttttataatcccaaaaagctaatttactctg
ggtatctgtgtaggggtaaataaaaaagtcttccaggcgaccaaaatcca
tgggtgctcaaattccttacatacaacttaagcacaacttcctctatatt
tgaaatcattgttacctataacacctaatgtcatatgagtgccatgtgag
tagttatgctgtatttgtattagttatagtggttttttttttaaatttga
tacatgattgtttgggtttgtggatgcagaatcttagatatggagtctga
atgcttaggtttgtaaaaacaagactctaatttagaataaaactaaacat
tagaagggctggaaagatggctcaacaattaaagagcacttggctgccct
tgcgaagacctgcatccagttctagcattcttattaggcagataggacca
gggacgctacactcttcttcgggcctttctgcacaccacaaaacaatggg
cttagactttcattgatgaaaacaattccccacaaaaaaatattaaaaat
atctaaccaacataaaccccggcagtacttatattgcttcggttttaatc
ctctcactgcccattttcgtaagtaggttcctggagggagaacatgatg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_24957009_24958068
seq2: B6Ng01-137J13.g_65_1112

seq1  GAATTCTTTCTTGGAATATCTATCTTTTTTTTTAAAAAAGATTTATTTAT  50
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  GAATTCCTTCTTGGAATATCTATCTTTTTTTTTAAAAAAAATTTATTTAT  50

seq1  TTATTTATTTATTTATTTATTTTATGTATATGAGTACACTGTAGCTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTATTTATTTATTTATTTATTTTATGTATATGAGTACACTGGAGCTGCAC  100

seq1  AGATGGTTGTGAGCCTTCATATGGTTGTTGGAAATTTAATTTTTTTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTGTGAGCCTTCATATGGTTGTTGGAAATTTAATTTTTTTTTTG  150

seq1  GACCTCTGCTCACTCTGGTCAACTCTGCTCGCTCATTCCCTGCTTGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTGCTCACTCTGGTCAACTCTGCTCGCTCATTCCCTGCTTGCTCT  200

seq1  GGCCCAAAGATTTATTTATTATTATTCATAAGTACACTGTAGCTGTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAAGATTTATTTATTATTATTCATAAGTACACTGTAGCTGTCTCC  250

seq1  AGACATACCAGAAAAGGGTGTAAGATCTCATTACAGATGGATTTGAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACCAGAAAAGGGTGTAAGATCTCATTACAGATGGATTTGAGCCA  300

seq1  CCATGTGGTTGTTGGGATTTGAACTCAGGGCCTCTGGAAGAGAGGTCAGT  350
      |||||||| ||||||||  | |||||  | || |||||| | ||||||||
seq2  CCATGTGGATGTTGGGAGATAAACTCCCGACCACTGGAAAATAGGTCAGT  350

seq1  GCTCTTACCCGATGAGCAATCTCACTAGCCCAGAATATTTATCTTTAAGA  400
      |||||||||| ||||||| |||||||| |||| |||||| | | |||| |
seq2  GCTCTTACCCAATGAGCACTCTCACTATCCCAAAATATTGAACATTAATA  400

seq1  TAATGACATAATTTATAATTTTTATAATCACAAAAAGCTAATTTTCTCTT  450
      ||||||||| |||||  | |||||||||| |||||||||||||| |||| 
seq2  TAATGACATGATTTAGCACTTTTATAATCCCAAAAAGCTAATTTACTCTG  450

seq1  GGTATCTGTGTAGGGTTAAATAAAAAAGTCTTCCAGGCTACCAAAATCCA  500
      ||||||||||||||| |||||||||||||||||||||| |||||||||||
seq2  GGTATCTGTGTAGGGGTAAATAAAAAAGTCTTCCAGGCGACCAAAATCCA  500

seq1  TGGGTGCTCAAATTCCTTACATACAACTTAAGCACAACTTCCTCTATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTCAAATTCCTTACATACAACTTAAGCACAACTTCCTCTATATT  550

seq1  TGAAATCATTGTTACCTATAACACCTAATGTCATATGAGTGCCATGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCATTGTTACCTATAACACCTAATGTCATATGAGTGCCATGTGAG  600

seq1  TAGTTATGCTGTATTTGTATTAGTTATAGTGGTTTTTTTTTTAAATTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATGCTGTATTTGTATTAGTTATAGTGGTTTTTTTTTTAAATTTGA  650

seq1  TACATGATTGTTTGGGTTTGTGGATGCAGAATCTTCAGATATGGAGTCTG  700
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TACATGATTGTTTGGGTTTGTGGATGCAGAATCTT-AGATATGGAGTCTG  699

seq1  AATGCTTAGGTTTGTAAAAACAAGACTCT-AGTTAGAATAAAACTAAACA  749
      ||||||||||||||||||||||||||||| | ||||||||||||||||| 
seq2  AATGCTTAGGTTTGTAAAAACAAGACTCTAATTTAGAATAAAACTAAAC-  748

seq1  ATTAGAAGGGCTGGAAAGATGGCTCAACAATT-AAGAGCACTT-GCTGCC  797
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  ATTAGAAGGGCTGGAAAGATGGCTCAACAATTAAAGAGCACTTGGCTGCC  798

seq1  CTTGCAGAAGACCTGCATCCAGTTCTAGCATTCCTATTAGGCAGATAGGT  847
      ||||| ||||||||||||||||||||||||||| ||||||||||||||| 
seq2  CTTGC-GAAGACCTGCATCCAGTTCTAGCATTCTTATTAGGCAGATAGGA  847

seq1  CCAGGGACGCTAACAC-CCTCTTCTGGCCTTTCTGCACACCACAAAAACA  896
      ||||||||||| |||| | ||||| |||||||||||||||||| ||||||
seq2  CCAGGGACGCT-ACACTCTTCTTCGGGCCTTTCTGCACACCAC-AAAACA  895

seq1  AATGGCATAGACTTCCATAGATGAAAACAAATACACACAAAAATAAATAT  946
      |  ||| ||||||| ||| ||||||||||| | | |||||||  ||||||
seq2  ATGGGCTTAGACTTTCATTGATGAAAACAATTCCCCACAAAA--AAATAT  943

seq1  TTAAAAAATATCTAAACAAAGATAAACACTGGCAGTACATAATATTGTAT  996
      |  |||||||||| ||| || |||||| | |||||||| | ||||||  |
seq2  T--AAAAATATCT-AACCAACATAAACCCCGGCAGTAC-TTATATTGCTT  989

seq1  CCGGCTTTTAATCCTCTCACATGCCCTTTGTCTTAGGTCAGGTTCCCTGG  1046
      |  | ||||||||||||||| ||||| || || || || ||||| |||||
seq2  C--GGTTTTAATCCTCTCAC-TGCCCATTTTCGTAAGT-AGGTT-CCTGG  1034

seq1  AGGGAGAACTTGAT  1060
      ||||||||| ||||
seq2  AGGGAGAACATGAT  1048