BAC Information

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BAC

Clone NameB6Ng01-139A23
Chromosome17 (Build37)
Map Location 86,669,843 - 86,850,803
singlet/doubletdoublet
Overlap genePrkce
Upstream gene1700106N22Rik, EG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2, LOC100043903, Srbd1, LOC545228
Downstream geneEpas1, 1700090G07Rik, Atp6v1e2, Rhoq, Pigf, Cript, EG433144, Socs5, Mcfd2, Ttc7, 1700011E24Rik, Calm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139A23.bB6Ng01-139A23.g
ACCDH938142DH938143
length517228
definitionDH938142|Mus musculus domesticus DNA, BAC clone: B6Ng01-139A23, 5' end.DH938143|Mus musculus domesticus DNA, BAC clone: B6Ng01-139A23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,669,843 - 86,670,359)(86,850,570 - 86,850,803)
sequence
gaattccattgttaatgcattggtgggatcacatttaaacctgagccctc
ccagttcttgaaaacagagcacagtgccttattgagatacaagtccctta
gtacaggctccacccatctaaagagtgcagctcaaaggcttaaaatgcag
ttacatttacacgacagttatcccagtgctcaggacgtgttcatcgttca
ttgagtcacggaggagcccacactcattaactcatcactcgtccctccca
cccctcgtcaacagccaacccggctttctgcccattccttgatgttctac
aggaatgaaatcatacgcagtgattatgtcgcagtgattatatcgggcgt
cttctgctcagtatgttgtccttacgtttcatccatgtcaccgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaagcacaggtcctttttgc
agctgtgccaggtcttgctccagtgaatgtagtgcactttagctatcatt
tcactagcctctgggtg
actctgtagatgagggtggcctggaacttagaaatccacctggctctgac
tcccaagtgctgggattgaaagcttgaaccactagtgcttggctatattt
ttcttatcaattataagcatctattcttagccatctatgcattaaattaa
aaacaagtctctctctctctcttctctctctctctctctctctctctctc
tctctctctctctctctctgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_86669843_86670359
seq2: B6Ng01-139A23.b_41_557

seq1  GAATTCCATTGTTAATGCATTGGTGGGATCACATTTAAACCTGAGCCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGTTAATGCATTGGTGGGATCACATTTAAACCTGAGCCCTC  50

seq1  CCAGTTCTTGAAAACAGAGCACAGTGCCTTATTGAGATACAAGTCCCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTTGAAAACAGAGCACAGTGCCTTATTGAGATACAAGTCCCTTA  100

seq1  GTACAGGCTCCACCCATCTAAAGAGTGCAGCTCAAAGGCTTAAAATGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGCTCCACCCATCTAAAGAGTGCAGCTCAAAGGCTTAAAATGCAG  150

seq1  TTACATTTACACGACAGTTATCCCAGTGCTCAGGACGTGTTCATCGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTACACGACAGTTATCCCAGTGCTCAGGACGTGTTCATCGTTCA  200

seq1  TTGAGTCACGGAGGAGCCCACACTCATTAACTCATCACTCGTCCCTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCACGGAGGAGCCCACACTCATTAACTCATCACTCGTCCCTCCCA  250

seq1  CCCCTCGTCAACAGCCAACCCGGCTTTCTGCCCATTCCTTGATGTTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCGTCAACAGCCAACCCGGCTTTCTGCCCATTCCTTGATGTTCTAC  300

seq1  AGGAATGAAATCATACGCAGTGATTATGTCGCAGTGATTATATCGGGCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGAAATCATACGCAGTGATTATGTCGCAGTGATTATATCGGGCGT  350

seq1  CTTCTGCTCAGTATGTTGTCCTTACGTTTCATCCATGTCACCGTGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTCAGTATGTTGTCCTTACGTTTCATCCATGTCACCGTGTGTGT  400

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAGCACAGGTCCTTTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAGCACAGGTCCTTTTTGC  450

seq1  AGCTGTGCCAGGTCTTGCTCCAGTGAATGTAGTGCACTTTAGCTATCAGT  500
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGCTGTGCCAGGTCTTGCTCCAGTGAATGTAGTGCACTTTAGCTATCATT  500

seq1  TCACTAGCCTCTGGGTG  517
      |||||||||||||||||
seq2  TCACTAGCCTCTGGGTG  517

seq1: chr17_86850570_86850803
seq2: B6Ng01-139A23.g_65_298 (reverse)

seq1  CACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50

seq1  GAGAAGAGAGAGAGAGAGAGACTTGTTTTTAATTTAATGCATAGATGGCT  100
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGAGAGAGAGAGAGACTTGTTTTTAATTTAATGCATAGATGGCT  100

seq1  AAGAATAGATGCTTATAATTGATAAGAAAAATATAGCCAAGCACTAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAGATGCTTATAATTGATAAGAAAAATATAGCCAAGCACTAGTGG  150

seq1  TTCAAGCTTTCAATCCCAGCACTTGGGAGTCAGAGCCAGGTGGATTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCTTTCAATCCCAGCACTTGGGAGTCAGAGCCAGGTGGATTTCTA  200

seq1  AGTTCCAGGCCACCCTCATCTACAGAGTGAATTC  234
      ||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGCCACCCTCATCTACAGAGTGAATTC  234