BAC Information

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BAC

Clone NameB6Ng01-139H16
Chromosome17 (Build37)
Map Location 55,403,894 - 55,405,027
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117, EG629178, LOC100043833, LOC100043485
Downstream geneLOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139H16.bB6Ng01-139H16.g
ACCDH938450DH938451
length1,2011,114
definitionDH938450|Mus musculus domesticus DNA, BAC clone: B6Ng01-139H16, 5' end.DH938451|Mus musculus domesticus DNA, BAC clone: B6Ng01-139H16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagaccctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaattttccccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttccacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctgttccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaatttg
ctctgtagtaaagctttaggtcaggcatggtgattccaccagaggttctt
ttatccttgagaagagtttttgctatcctaggttttttgttataccagat
gaatttgcaaatttctccttctaatttgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagatgcttttggcgagatagccaatt
ttacaatgttgatcctgccaatccatgatatgggagatctttccatcttc
tgagatcttctttaatttctttcttcagagatttgaagttcttatcatac
agatctttcacttccttagttagagtcacgctgagatttttatattatct
gtgactatgagaaggtgttgtttccctaatttctttcctcagcctgttat
cttgtgtagagaaggccattgacttgttgaattaattttatatccagcta
cctcaccaaagctgttatcagttaggagttccttgtgaaattttacggtc
acttataatactatcattatttctgcaaaaggaattttggacttctcatc
tccatttgattcccctgattcccttttgttgccaagttctcggcaaatct
t
gaattccagaaaagaaatctaccatagaaaaattcaggagtttaattgtg
gccaagctgtgttagaatcatcaaaaccacatgtgtgtattctttacaaa
gggatgtgctaacaattgctctgggctttccaccttttggctgagaggtt
cttatattttgcaaactatccatatgccttccttcatgacctatatttca
ggtcatcaaacagtaatttttagagtgttgtatatgtagcttcagtatgg
cccacactccaggcccagcactttctcatatttctgttaaagtaaattat
ttttccccatccagatgagagccatgtatcatcattaccatctttaagct
gtattatcttcaagagagaacacatacaaagttgaaaacctgtaaataat
gatttgacttttctagtagcactctgcattgttacttatgaaatagtctt
caaaacttaaatcctgcagctgaatattagatataaatatttttatgaaa
ttatgaatatattatgaatattctgggtaaacagtatcctatgtatactg
tgcgagtcataaccacatagagtagataatttcagtttgtcctttcattg
agagactaccgtattattcgtctacatatttaaatttatgcttataattt
atgaatcatatttactggagatttataaactttttgtacagggggccaga
ttactataggacacataaaatatatgccacatgttctacacatttaggaa
atgttgatgtgaatgtaaaattgtgcaagtttcaccttggaggccattat
gaaaatggccaaaatttgatacaacagccatagttttgatgaagggcttc
attatgttgtccttaacattatactaattttgctaagaaaattagagttg
agacattttttttattataaaattttgagatatgaccacaaagaatgctt
cataagattaggtgatatttaaatacacgtattttatgtgtgcatattag
tacaactcttgcatataaaatacatattattatttatgcgcagttataac
atagaattatatctaatactaccactatcatctcaccttccgagccagta
gctgcttatgatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_55403894_55405027
seq2: B6Ng01-139H16.g_68_1181

seq1  GAATTCCAGAAAAGAAATCTACCATAGAAAAATTCAGGAGTTTAATTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAAGAAATCTACCATAGAAAAATTCAGGAGTTTAATTGTG  50

seq1  GCCAAGCTGTGTTAGAATCATCAAAACCACATGTGTGTATTCTTTACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCTGTGTTAGAATCATCAAAACCACATGTGTGTATTCTTTACAAA  100

seq1  GGGATGTGCTAACAATTGCTCTGGGCTTTCCACCTTTTGGCTGAGAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTGCTAACAATTGCTCTGGGCTTTCCACCTTTTGGCTGAGAGGTT  150

seq1  CTTATATTTTGCAAACTATCCATATGCCTTCCTTCATGACCTATATTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATTTTGCAAACTATCCATATGCCTTCCTTCATGACCTATATTTCA  200

seq1  GGTCATCAAACAGTAATTTTTAGAGTGTTGTATATGTAGCTTCAGTATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCAAACAGTAATTTTTAGAGTGTTGTATATGTAGCTTCAGTATGG  250

seq1  CCCACACTCCAGGCCCAGCACTTTCTCATATTTCTGTTAAAGTAAATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACTCCAGGCCCAGCACTTTCTCATATTTCTGTTAAAGTAAATTAT  300

seq1  TTTTCCCCATCCAGATGAGAGCCATGTATCATCATTACCATCTTTAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCATCCAGATGAGAGCCATGTATCATCATTACCATCTTTAAGCT  350

seq1  GTATTATCTTCAAGAGAGAACACATACAAAGTTGAAAACCTGTAAATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATCTTCAAGAGAGAACACATACAAAGTTGAAAACCTGTAAATAAT  400

seq1  GATTTGACTTTTCTAGTAGCACTCTGCATTGTTACTTATGAAATAGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGACTTTTCTAGTAGCACTCTGCATTGTTACTTATGAAATAGTCTT  450

seq1  CAAAACTTAAATCCTGCAGCTGAATATTAGATATAAATATTTTTATGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTAAATCCTGCAGCTGAATATTAGATATAAATATTTTTATGAAA  500

seq1  TTATGAATATATTATGAATATTCTGGGTAAACAGTATCCTATGTATACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAATATATTATGAATATTCTGGGTAAACAGTATCCTATGTATACTG  550

seq1  TGCGAGTCATAACCACATAGAGTAGATAATTTCAGTTTGTCCTTTCATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGTCATAACCACATAGAGTAGATAATTTCAGTTTGTCCTTTCATTG  600

seq1  AGAGACTACCGTATTATTCGTCTACATATTTAAATTTATGCTTATAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTACCGTATTATTCGTCTACATATTTAAATTTATGCTTATAATTT  650

seq1  ATGAATCATATTTACTGGAGATTTATAAACTTTTTGTACAGGGGGCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCATATTTACTGGAGATTTATAAACTTTTTGTACAGGGGGCCAGA  700

seq1  TTACTATAGGACACATAAAATATATGCCACATGTTCTACACATTTAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATAGGACACATAAAATATATGCCACATGTTCTACACATTTAGGAA  750

seq1  ATGTTGATGTGAATGTAAAATTGTGCAAGTTTCACCTTGGAGGCCATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGATGTGAATGTAAAATTGTGCAAGTTTCACCTTGGAGGCCATTAT  800

seq1  GAAAATGGCCAAAATTTGATACAACAGCCATAGTTTTGATGAAGGGCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGCCAAAATTTGATACAACAGCCATAGTTTTGATGAAGGGCTTC  850

seq1  ATTATGTTGTCCTTAACATTTATACTAATTTTGCTAAGAAAAATTAGAGT  900
      |||||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  ATTATGTTGTCCTTAACA-TTATACTAATTTTGCTAAG-AAAATTAGAGT  898

seq1  TGAGACAATTTTTTTTAATTATAAAATTTTGAGATAATGACCACAAAGAA  950
      |||||||  ||||||| |||||||||||||||||| ||||||||||||||
seq2  TGAGACA--TTTTTTTTATTATAAAATTTTGAGAT-ATGACCACAAAGAA  945

seq1  TGCTTCATAAGAATTAGGTGATATTTTAAAATACACGTATTTTATGTGTG  1000
      ||||||||||| ||||||||||||||  ||||||||||||||||||||||
seq2  TGCTTCATAAG-ATTAGGTGATATTT--AAATACACGTATTTTATGTGTG  992

seq1  CATATTAAGTACCAACTCTTTGCATATAAAATACATATTAATTATTTATG  1050
      |||||| |||| |||||| |||||||||||||||||||| ||||||||||
seq2  CATATT-AGTA-CAACTC-TTGCATATAAAATACATATT-ATTATTTATG  1038

seq1  CGCAGTTAATGACATAGAAATTAATATCTAATAACTACCAACTATCAATC  1100
      ||||||| || ||||||||  | ||||||||| |||||| |||||| |||
seq2  CGCAGTT-ATAACATAGAA--TTATATCTAAT-ACTACC-ACTATC-ATC  1082

seq1  TCAACTTCCAGAGCCAGTTAGCTGCTTATGATAC  1134
      ||| ||||| ||||||| ||||||||||||||||
seq2  TCACCTTCC-GAGCCAG-TAGCTGCTTATGATAC  1114