BAC Information

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BAC

Clone NameB6Ng01-139N07
Chromosome17 (Build37)
Map Location 80,608,637 - 80,740,644
singlet/doubletdoublet
Overlap gene4930560E09Rik, Gemin6, Dhx57, Morn2
Upstream geneLOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7
Downstream geneSos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139N07.bB6Ng01-139N07.g
ACCDH938714DH938715
length8851,083
definitionDH938714|Mus musculus domesticus DNA, BAC clone: B6Ng01-139N07, 5' end.DH938715|Mus musculus domesticus DNA, BAC clone: B6Ng01-139N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,608,637 - 80,609,513)(80,739,537 - 80,740,644)
sequence
gaattctctcggtacaccaggctagcctggaactcagagagacccacctg
cctctgtctcttgagtgctgggattaaatgtgtatgccaccatgcccagc
ctctagatttgagtttaaatgaatctacttgggtcaacacatattctaac
atttgctaatataagctattgagtgattattattatgccacagttgttaa
atcttggctattgggggctggtgagatggctcagtgggtaagagcacccg
actgctcttccgaaggtcaggagttcaaatcccagcaaccacatggtggc
tcacaaccatccgatcctgagatatgactccctcttctggagtgtctgaa
gacagctacagtgtacttacatataataaataaataaataaataaataaa
taaatctaaaaaaaaatcttggctattaccacattaaagttgggggttat
ggctaagacaggaaaataattagaggccagcctgggttacatagtattat
agtattataatcctatgatctgcataggaaaaaccctatctttgaattta
gaacaacaaaaaaaggaaggcagagtattcataatctttttacatcaatt
tttttgttttgtttggtttggttttttgagacagggtttctctgcgcagt
tctggctatcctggaactcactctgtagaccaggcttggtcttgaactca
gaaatccacctgcctctgcctcccaagtgctgggattacaggcgtgtgcc
acccactgcccagcccaattttttaaaattttatcttccatttattaaaa
tgaaaaagagttgaaacagttgtttttttgtggtggtggttgtttattga
aaacaggatcctgctgtaagtcttcctacttccat
gaattcttagaataacttcagaagtcaccaaatcctgtctgaaagcatta
taaagacagcagcgagtggctgagaagcccacacccatactttggggttc
accatactttcttcctgggcatgcctctcttaacccttgtgtttaaaatc
atatcgccatctctgtcattgacctccaactctgccccacactggctttt
cctgaaattctttcccacagttcggccaaggacccagctttgcctgaaga
ggtctctgataacttcaggtgtctgaggaagatggctggagttgcgcctc
tgtgtcttcgccactgatattttcattacacagaaaactgggcaataaaa
ggtgagacttggcctaggtctccttccttcacctgccatggaaaccacag
gtccttctgtgctataaggcaggaatcaggggcttagtcaaattgcagag
actctggtgggttttgtttcgctcctgcccctcatcttttgcttctccga
gattcttgtttaggttgggctttggttttgagacagagcctcactctgct
gctggcacttcttagatctgttttattgaccatgcgatgcaagctggctt
tgaacttctgatcttcttgcccttgccttccccagctttctgggtgctgt
gccactatccaccacatccagcttggtcttttcatacggaaacctttctt
ttcttttcttttcttttcttttcttttcttttcttttcttttcttttctc
ttctttccctttctttctctctttctttctttctttctttccttcttctt
tcttctttctttctttctttctttctttctttccctctttcttcttcttt
ttttttttttccagacagggtttctctgtgtagtcctggctgtcctgcaa
ctcgacttaggaatccacctgcctctgcctccaagtgctgggattaaagt
gtgcgccaccaccgcccggcctaactgaccttcagaaacactttggagtg
gttggattagagcaacatgagatcttcttttcccacgctatctccccaca
gcgatgactgcatcagactcttgcttccggacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_80608637_80609513
seq2: B6Ng01-139N07.b_46_930

seq1  GAATTCTCTCGGTACACCAGGCTAGCCTGGAACTCAGAGAGACCCACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCGGTACACCAGGCTAGCCTGGAACTCAGAGAGACCCACCTG  50

seq1  CCTCTGTCTCTTGAGTGCTGGGATTAAATGTGTATGCCACCATGCCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTCTCTTGAGTGCTGGGATTAAATGTGTATGCCACCATGCCCAGC  100

seq1  CTCTAGATTTGAGTTTAAATGAATCTACTTGGGTCAACACATATTCTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGATTTGAGTTTAAATGAATCTACTTGGGTCAACACATATTCTAAC  150

seq1  ATTTGCTAATATAAGCTATTGAGTGATTATTATTATGCCACAGTTGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTAATATAAGCTATTGAGTGATTATTATTATGCCACAGTTGTTAA  200

seq1  ATCTTGGCTATTGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGCTATTGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCG  250

seq1  ACTGCTCTTCCGAAGGTCAGGAGTTCAAATCCCAGCAACCACATGGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTTCCGAAGGTCAGGAGTTCAAATCCCAGCAACCACATGGTGGC  300

seq1  TCACAACCATCCGATCCTGAGATATGACTCCCTCTTCTGGAGTGTCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCATCCGATCCTGAGATATGACTCCCTCTTCTGGAGTGTCTGAA  350

seq1  GACAGCTACAGTGTACTTACATATAATAAATAAATAAATAAATAAATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTACAGTGTACTTACATATAATAAATAAATAAATAAATAAATAAA  400

seq1  TAAATCTAAAAAAAAATCTTGGCTATTACCACATTAAAGTTGGGGGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTAAAAAAAAATCTTGGCTATTACCACATTAAAGTTGGGGGTTAT  450

seq1  GGCTAAGACAGGAAAATAATTAGAGGCCAGCCTGGGTTACATAGTATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGACAGGAAAATAATTAGAGGCCAGCCTGGGTTACATAGTATTAT  500

seq1  AGTATTATAATCCTATGATCTGCATAGGAAAAACCCTATCTTTGAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTATAATCCTATGATCTGCATAGGAAAAACCCTATCTTTGAATTTA  550

seq1  GAACAACAAAAAAAGGAAGGCAGAGTATTCATAATCTTTTTACATCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACAAAAAAAGGAAGGCAGAGTATTCATAATCTTTTTACATCAATT  600

seq1  TTTTTGTTTTGTTTGGTTTGGTTTTTTGAGACAGGGTTTCTCTGCGCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTGTTTGGTTTGGTTTTTTGAGACAGGGTTTCTCTGCGCAGT  650

seq1  TCTGGCTATCCTGGAACTCACTCTGTAGACCAGGC-TGGTCTTGAACTCA  699
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTGGCTATCCTGGAACTCACTCTGTAGACCAGGCTTGGTCTTGAACTCA  700

seq1  GAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTACAGGCGTGTGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTACAGGCGTGTGCC  750

seq1  A-CCACTGCCCAGCCCAATTTTT--AAAATTTATCTT-CATTTATT-AAA  794
      | |||||||||||||||||||||  ||| |||||||| |||||||| |||
seq2  ACCCACTGCCCAGCCCAATTTTTTAAAATTTTATCTTCCATTTATTAAAA  800

seq1  TG-AAAAGAGTTG-AACAGTTGTTTTTTGTTGGTGGTGTTTGTTTATTG-  841
      || |||||||||| ||||||||||||||  |||||||| |||||||||| 
seq2  TGAAAAAGAGTTGAAACAGTTGTTTTTTTGTGGTGGTGGTTGTTTATTGA  850

seq1  AAACAGGATCTTGCTGTAAGCTCTTCCTACATCCAT  877
      |||||||||| ||||||||| ||||||||| |||||
seq2  AAACAGGATCCTGCTGTAAG-TCTTCCTACTTCCAT  885

seq1: chr17_80739537_80740644
seq2: B6Ng01-139N07.g_68_1150 (reverse)

seq1  GGTCTGGAAGCAAAGAAGTCTGATGCAGTCATTCCGGCTGGTGGGAGATA  50
      |||| ||||||||   ||||||||||||||||    ||||  ||||||||
seq2  GGTCCGGAAGCAA--GAGTCTGATGCAGTCAT---CGCTGTGGGGAGATA  45

seq1  GCGTTGGGAAAAAGAAAGATCTTCATTGTTTGCTCTAATCAAAACCAACT  100
      ||| ||||||||   |||||| ||||   ||||||||||| ||  | |||
seq2  GCG-TGGGAAAA--GAAGATC-TCAT--GTTGCTCTAATCCAA--CCACT  87

seq1  CCAAAGTGTTTTCTTGAAAGGTTCAGTATAGGCCGGGCGGTGGTGGCGCA  150
      |||||||||||   ||||  | ||||| ||||||||||||||||||||||
seq2  CCAAAGTGTTT--CTGAA--GGTCAGT-TAGGCCGGGCGGTGGTGGCGCA  132

seq1  CACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTTTGAGTT  200
      || ||||||||||||||||| |||||||||||||||||||||  | || |
seq2  CA-CTTTAATCCCAGCACTT-GGAGGCAGAGGCAGGTGGATTCCTAAG-T  179

seq1  CGAGTTGCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTTGGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CGAGTTGCAGGACAGCCAGGACTACACAGAGAAACCCTGTC-TGGAAAAA  228

seq1  AAAAAAAAGAAAGAAAGAAAGAAGGAAAGAAAGAAAGAAAGAAAGAAAGA  300
      |||||||||||   |||||||| |||||||||||||||||||||||||||
seq2  AAAAAAAAGAA--GAAGAAAGAGGGAAAGAAAGAAAGAAAGAAAGAAAGA  276

seq1  AAGAAAGAAAGAAAGAAGGAAAGAAAGAAAGAAAGAAAGAGAGAAAGAAA  350
      ||| ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAG-AAGAAAG-AAGAAGGAAAGAAAGAAAGAAAGAAAGAGAGAAAGAAA  324

seq1  GGGAAAGAAGAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGAAGAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAA  374

seq1  AGAAAAGAAAAGAAAGG-TTCCGTATGAAAAGACCAAGCTGGATGTGGTG  449
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAAGAAAGGTTTCCGTATGAAAAGACCAAGCTGGATGTGGTG  424

seq1  GATAGTGGCACAGCACCCAGAAAGCTGGGGAAGGCAAGGGCAAGAAGATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGGCACAGCACCCAGAAAGCTGGGGAAGGCAAGGGCAAGAAGATC  474

seq1  AGAAGTTCAAAGCCAGCTTGCATCGCATGGTCAATAAAACAGATCTAAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTCAAAGCCAGCTTGCATCGCATGGTCAATAAAACAGATCTAAGA  524

seq1  AGTGCCAGCAGCAGAGTGAGGCTCTGTCTCAAAACCAAAGCCCAACCTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCAGCAGCAGAGTGAGGCTCTGTCTCAAAACCAAAGCCCAACCTAA  574

seq1  ACAAGAATCTCGGAGAAGCAAAAGATGAGGGGCAGGAGCGAAACAAAACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAATCTCGGAGAAGCAAAAGATGAGGGGCAGGAGCGAAACAAAACC  624

seq1  CACCAGAGTCTCTGCAATTTGACTAAGCCCCTGATTCCTGCCTTATAGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAGTCTCTGCAATTTGACTAAGCCCCTGATTCCTGCCTTATAGCA  674

seq1  CAGAAGGACCTGTGGTTTCCATGGCAGGTGAAGGAAGGAGACCTAGGCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGACCTGTGGTTTCCATGGCAGGTGAAGGAAGGAGACCTAGGCCA  724

seq1  AGTCTCACCTTTTATTGCCCAGTTTTCTGTGTAATGAAAATATCAGTGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCACCTTTTATTGCCCAGTTTTCTGTGTAATGAAAATATCAGTGGC  774

seq1  GAAGACACAGAGGCGCAACTCCAGCCATCTTCCTCAGACACCTGAAGTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACACAGAGGCGCAACTCCAGCCATCTTCCTCAGACACCTGAAGTTA  824

seq1  TCAGAGACCTCTTCAGGCAAAGCTGGGTCCTTGGCCGAACTGTGGGAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGACCTCTTCAGGCAAAGCTGGGTCCTTGGCCGAACTGTGGGAAAG  874

seq1  AATTTCAGGAAAAGCCAGTGTGGGGCAGAGTTGGAGGTCAATGACAGAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGGAAAAGCCAGTGTGGGGCAGAGTTGGAGGTCAATGACAGAGA  924

seq1  TGGCGATATGATTTTAAACACAAGGGTTAAGAGAGGCATGCCCAGGAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGATATGATTTTAAACACAAGGGTTAAGAGAGGCATGCCCAGGAAGA  974

seq1  AAGTATGGTGAACCCCAAAGTATGGGTGTGGGCTTCTCAGCCACTCGCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGGTGAACCCCAAAGTATGGGTGTGGGCTTCTCAGCCACTCGCTG  1024

seq1  CTGTCTTTATAATGCTTTCAGACAGGATTTGGTGACTTCTGAAGTTATTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTATAATGCTTTCAGACAGGATTTGGTGACTTCTGAAGTTATTC  1074

seq1  TAAGAATTC  1108
      |||||||||
seq2  TAAGAATTC  1083