BAC Information

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BAC

Clone NameB6Ng01-141A05
Chromosome17 (Build37)12 (Build37)
Map Location 63,627,242 - 63,628,34512,760,169 - 12,760,312
singlet/doubletsingletsinglet
Overlap geneFbxl17
Upstream geneEfna5
Downstream genePpia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2, LOC669778
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141A05.bB6Ng01-141A05.g
ACCDH939591DH939592
length1,085947
definitionDH939591|Mus musculus domesticus DNA, BAC clone: B6Ng01-141A05, 5' end.DH939592|Mus musculus domesticus DNA, BAC clone: B6Ng01-141A05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(63,627,242 - 63,628,345)(12,760,169 - 12,760,312)
sequence
gaattctcagtggtaaaaatcacagacagaatgtcaagggcataggaatg
tctggaagaagtcgacaagatttagttgataggtgtctgcaggttttttt
tgatatgaatgtctccgccaactagagcaagaaatgtcctgatgagatga
agatagaaagcataaatggctggttcatccaagccattcacaccctcacc
tatattcaagaaaacatatatttctagcatcttactgttaagtgaattac
catctgtagtattttaaaataggtttacttaaaagaatattgcatcacag
caaattttggttaaaaatcttaccctgaaaaatgtgttacctagattata
catgttacattatgttattatgttactatgcatattatattgtgattatt
atctcctttaatatgaaaagtgaaaggatgaagtgctgtccattgctatg
tttaaagttatgtttgctaagattaaaagattacttgattgtgagggcgc
tatggcctcggtggctactccacactgcaggcactgtgaggaggaggggt
cgagatggaagaagtagttagttcatgggaagccgacctgcaatcctaca
tctgtgtctggcccctctccatcactctcactgccccctggctatcatgc
tttgccaccaccatagccgttcagcatatttgtgccttgccatgagtgga
ctcaaacctgcaacaaagacagaatggatgtttttctcctcggtctgatt
attttaggcattttttttccataggtaactaacaccatggatccaaccag
gcagaagtttggagcaagttttgcttgttagaatattcttcctggtgaat
agacttactcttagtttcttgtggctccctcactgttgcaggccagctct
ccagtcaggtcgttctgtgcagccatggttgactctgaagagtcatcagc
tagctgtatgctgcctcaagtcagtgagcttgggttcatgctgaaggaga
ttggctgtctatttcaccccagtgcatgaagctactctatgactgaactc
ttttctatctactttgagtggattatctcatgaca
gaattctcacctgaggaatacctaatggcagagaagcacctgaaaaaaat
gctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatgactaagatcaaaaattcaggtgacag
cagatgctggagaggatgtggagaaaaaggaacactcctccattgatgat
gggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaattggacatagtactactggaggatcccgcaatatctctcctggg
catatatccagaagatgtcccaactggtaagaaggacacatgctccacta
tgttcatagcagcctcatttataatagccagaagaagctggaaagaaccc
agatgcccctcaacataggaatggatacagaaaatgtggtacatttacac
aatggagtactactcagctattaaaaagaatgaatttatgaaattcctag
ccaaatggatggacctggagggcatcatcctgagtgaggaaacacattcg
caaaggaactcacacaatatgtactcactgataagtggatattagcccaa
aacctaggatacccaagatataagatacaatttgctaaacacgtgaaact
caagaagaatgaagactgaagtgtggacactatgcccctccttagaaatg
ggaacaaaacacccatggaaggagttacagagacaaagtttggagctgag
atgaaaggatggaccatctagagactgccatatccagggatccaccccat
aatcagcttccaaacgctgacaccattgcatacactagcaagattttatc
gaaaggacccagatgtagctgtctcttgtgagactatgccggggcctggc
aaacacagagtggatgctcacagtcagctattggatggatcacaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_63627242_63628345
seq2: B6Ng01-141A05.b_46_1130 (reverse)

seq1  TGTCATAGAGATAATTCAACTCAAAGTTAAGATATGAAAAGAGTTCAGTC  50
      |||||| ||||||| || |||||||||  ||||| |||||||||||||||
seq2  TGTCAT-GAGATAA-TCCACTCAAAGT--AGATA-GAAAAGAGTTCAGTC  45

seq1  AATTAAGAGTAGGCTTACAATGCACTGGGGTGGAGATAGACAGCCAATCT  100
      |    |||||| ||||   |||||||||||| || |||||||||||||||
seq2  A---TAGAGTA-GCTT--CATGCACTGGGGT-GAAATAGACAGCCAATCT  88

seq1  CCCTTCACGCATGGACCCAGGCTCACTGACTTGGAGGCAGCATACAGCCT  150
       |||||| ||||| ||||| |||||||||||| |||||||||||||||  
seq2  -CCTTCA-GCATGAACCCAAGCTCACTGACTT-GAGGCAGCATACAGC--  133

seq1  TAGCTGATGACTTCTTCAGGGTCAACCATGGCTGCACAGAACGACCTGAC  200
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  TAGCTGATGAC-TCTTCAGAGTCAACCATGGCTGCACAGAACGACCTGAC  182

seq1  TGGAGAGCTGGCCTGCAACAGTGAGGGAGCCACAAGAAACTAAGAGTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGCTGGCCTGCAACAGTGAGGGAGCCACAAGAAACTAAGAGTAAG  232

seq1  TCTATTTCACCAGGAAGAATATTCTAACAAGCAAAACTTGCTCCAAACTT  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTA-TTCACCAGGAAGAATATTCTAACAAGCAAAACTTGCTCCAAACTT  281

seq1  CTGCCTGGTTGGATCCATGGTGTTAGTTACCTATGGAAAAAAAATGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGTTGGATCCATGGTGTTAGTTACCTATGGAAAAAAAATGCCTA  331

seq1  AAATAATCAGACCGAGGAGAAAAACATCCATTCTGTCTTTGTTGCAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCAGACCGAGGAGAAAAACATCCATTCTGTCTTTGTTGCAGGTT  381

seq1  TGAGTCCACTCATGGCAAGGCACAAATATGCTGAACGGCTATGGTGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCACTCATGGCAAGGCACAAATATGCTGAACGGCTATGGTGGTGG  431

seq1  CAAAGCATGATAGCCAGGGGGCAGTGAGAGTGATGGAGAGGGGCCAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATGATAGCCAGGGGGCAGTGAGAGTGATGGAGAGGGGCCAGACA  481

seq1  CAGATGTAGGATTGCAGGTCGGCTTCCCATGAACTAACTACTTCTTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTAGGATTGCAGGTCGGCTTCCCATGAACTAACTACTTCTTCCAT  531

seq1  CTCGACCCCTCCTCCTCACAGTGCCTGCAGTGTGGAGTAGCCACCGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACCCCTCCTCCTCACAGTGCCTGCAGTGTGGAGTAGCCACCGAGGC  581

seq1  CATAGCGCCCTCACAATCAAGTAATCTTTTAATCTTAGCAAACATAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCGCCCTCACAATCAAGTAATCTTTTAATCTTAGCAAACATAACTT  631

seq1  TAAACATAGCAATGGACAGCACTTCATCCTTTCACTTTTCATATTAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATAGCAATGGACAGCACTTCATCCTTTCACTTTTCATATTAAAGG  681

seq1  AGATAATAATCACAATATAATATGCATAGTAACATAATAACATAATGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATAATCACAATATAATATGCATAGTAACATAATAACATAATGTAA  731

seq1  CATGTATAATCTAGGTAACACATTTTTCAGGGTAAGATTTTTAACCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATAATCTAGGTAACACATTTTTCAGGGTAAGATTTTTAACCAAAA  781

seq1  TTTGCTGTGATGCAATATTCTTTTAAGTAAACCTATTTTAAAATACTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTGATGCAATATTCTTTTAAGTAAACCTATTTTAAAATACTACA  831

seq1  GATGGTAATTCACTTAACAGTAAGATGCTAGAAATATATGTTTTCTTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTAATTCACTTAACAGTAAGATGCTAGAAATATATGTTTTCTTGAA  881

seq1  TATAGGTGAGGGTGTGAATGGCTTGGATGAACCAGCCATTTATGCTTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTGAGGGTGTGAATGGCTTGGATGAACCAGCCATTTATGCTTTCT  931

seq1  ATCTTCATCTCATCAGGACATTTCTTGCTCTAGTTGGCGGAGACATTCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCATCTCATCAGGACATTTCTTGCTCTAGTTGGCGGAGACATTCAT  981

seq1  ATCAAAAAAAACCTGCAGACACCTATCAACTAAATCTTGTCGACTTCTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAAAAACCTGCAGACACCTATCAACTAAATCTTGTCGACTTCTTC  1031

seq1  CAGACATTCCTATGCCCTTGACATTCTGTCTGTGATTTTTACCACTGAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATTCCTATGCCCTTGACATTCTGTCTGTGATTTTTACCACTGAGA  1081

seq1  ATTC  1104
      ||||
seq2  ATTC  1085

seq1: chr12_12760169_12760312
seq2: B6Ng01-141A05.g_811_954 (reverse)

seq1  GCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAAATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAAATCTT  50

seq1  GCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGGTGGAT  100
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTAGTGTATGCAATGGTGTCAGCGTTTGGAAGCTGATTATGGGGTGGAT  100

seq1  CCCTGGGTAAGGCAGTCTCTACATGGTCCATCCTTTCATCTCAG  144
      |||||| || ||||||||||| ||||||||||||||||||||||
seq2  CCCTGGATATGGCAGTCTCTAGATGGTCCATCCTTTCATCTCAG  144