BAC Information

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BAC

Clone NameB6Ng01-141D03
Chromosome14 (Build37)17 (Build37)
Map Location 15,936,864 - 15,937,93834,682,731 - 34,683,443
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePsmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7, Nek10
Downstream geneLrrc3b, LOC667205, 1700062C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141D03.bB6Ng01-141D03.g
ACCDH939712DH939713
length1,059765
definitionDH939712|Mus musculus domesticus DNA, BAC clone: B6Ng01-141D03, 5' end.DH939713|Mus musculus domesticus DNA, BAC clone: B6Ng01-141D03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,936,864 - 15,937,938)(34,682,731 - 34,683,443)
sequence
gaattccattacaaatggttggtgctaggaattgaactcataatctttga
cagagtagtcggtgagccatctctccagaccccttgtttctgcatgttaa
caagtttatttttggagaagagatggtattcttcagtttcattacttcgt
tcttttcttcatagtccttaaatgtgagttctgggcattgtcaagcaact
ttttgaaaagctcttctcatccaagtaggagttcctcccaggactcagct
ttagatttctcttccccatattttgtgtgattatctcttatcagggagcc
tcagatcttggttttacagggtcacttgagtagtaggtgctttggaccac
actccctggattctactttgtaaaagcaattatttcttgtagcatttcta
aggctgtcaagcagctttccaatttttgactctgaaaattacagttggta
cctgaagaaagcataaaacagagtttgaaagacagtagttttagtaatca
aaaaggctagaagactaaaggttagattaaactatattagattaggttag
acttaattaggtgcagattaagaaaagaaacatgggattttctttgtaac
ttcaatcagctattacacatggccatcagcactggccctctttccagttg
agagtgttgcctgttagctctgtgacaggacattgccttcctcagtagat
acttgttaattcacccagctccacattttcaagtgtgtctcccctgccac
taaggtttgcagaatgatctcttaagaagaagggtcacaatgggtgctaa
aatgaacaaattatcccattagccactagcttgtaatggcttttcctact
actagtttttagttgtgatgaggtgtccattccatgttattaagcacagt
ccacctattaacctaccactcaaaagctgggagatggggaatattatatt
acagtttacatgtagggaactgagcttatcaaatgaataagttactggct
caaaggcacactcagtagatgcagaactaagttagatagactactaccag
tatctgctc
gaattctttccgagtggatcctggcttggcatcaggaaagaatggactgg
gataggtgccctcgctgtggcccttgttttggcatgtatgttgggtgtat
ggtgtatgtattggttgcagaatgcccagctccacactgctaccatggtg
gtgcaagcttttgccacagtggaagcagggcagtcacctcagatttggtt
tgctgccatgaagaataaacaatgaagccattgcttcgtagggttgtacg
gctaaacactgcacagaggttagtctggaaactgtttgacaatctctggg
aggtatgtctgattgcatgatggttaagtgtcctagtgtccttcccccag
gaaaaacggcacgggagcaggtcagggttgctctgggtaaaaacctgtga
ggctaagagtcaatcctgtacatggcccctatttctgcacactggggatc
agagctctatcttcacccacggagcttgttcaaaaaaaaaatatatatat
atatattacataaaagagggatttgtaggaagccattccaggctgtaaac
aggccagctggatgtaaatctattccaggcagtaaacaaagcccatgttt
ggtggatggcccacccttaatccttgattggctgagcaagcctgcctggt
gagatgatgtgacctgtggtgattggtgggggcatggttgtggctggagt
ggagaaaaacacttgtaaacagagaggtgggggatttgaagaaaaaactg
cctgattaactgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_15936864_15937938
seq2: B6Ng01-141D03.b_49_1107

seq1  GAATTCCATTACAAATGGTTGGTGCTAGGAATTGAACTCATAATCTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTACAAATGGTTGGTGCTAGGAATTGAACTCATAATCTTTGA  50

seq1  CAGAGTAGTCGGTGAGCCATCTCTCCAGACCCCTTGTTTCTGCATGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAGTCGGTGAGCCATCTCTCCAGACCCCTTGTTTCTGCATGTTAA  100

seq1  CAAGTTTATTTTTGGAGAAGAGATGGTATTCTTCAGTTTCATTACTTCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTATTTTTGGAGAAGAGATGGTATTCTTCAGTTTCATTACTTCGT  150

seq1  TCTTTTCTTCATAGTCCTTAAATGTGAGTTCTGGGCATTGTCAAGCAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTCATAGTCCTTAAATGTGAGTTCTGGGCATTGTCAAGCAACT  200

seq1  TTTTGAAAAGCTCTTCTCATCCAAGTAGGAGTTCCTCCCAGGACTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAAGCTCTTCTCATCCAAGTAGGAGTTCCTCCCAGGACTCAGCT  250

seq1  TTAGATTTCTCTTCCCCATATTTTGTGTGATTATCTCTTATCAGGGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTCTCTTCCCCATATTTTGTGTGATTATCTCTTATCAGGGAGCC  300

seq1  TCAGATCTTGGTTTTACAGGGTCACTTGAGTAGTAGGTGCTTTGGACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCTTGGTTTTACAGGGTCACTTGAGTAGTAGGTGCTTTGGACCAC  350

seq1  ACTCCCTGGATTCTACTTTGTAAAAGCAATTATTTCTTGTAGCATTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTGGATTCTACTTTGTAAAAGCAATTATTTCTTGTAGCATTTCTA  400

seq1  AGGCTGTCAAGCAGCTTTCCAATTTTTGACTCTGAAAATTACAGTTGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTCAAGCAGCTTTCCAATTTTTGACTCTGAAAATTACAGTTGGTA  450

seq1  CCTGAAGAAAGCATAAAACAGAGTTTGAAAGACAGTAGTTTTAGTAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGAAAGCATAAAACAGAGTTTGAAAGACAGTAGTTTTAGTAATCA  500

seq1  AAAAGGCTAGAAGACTAAAGGTTAGATTAAACTATATTAGATTAGGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTAGAAGACTAAAGGTTAGATTAAACTATATTAGATTAGGTTAG  550

seq1  ACTTAATTAGGTGCAGATTAAGAAAAGAAACATGGGATTTTCTTTGTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTAGGTGCAGATTAAGAAAAGAAACATGGGATTTTCTTTGTAAC  600

seq1  TTCAATCAGCTATTACACATGGCCATCAGCACTGGCCCTCTTTCCAGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCAGCTATTACACATGGCCATCAGCACTGGCCCTCTTTCCAGTTG  650

seq1  AGAGTGTTGCCTGTTAGCTCTGTGACAGGACATTGCCTTCCTCAGTAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTTGCCTGTTAGCTCTGTGACAGGACATTGCCTTCCTCAGTAGAT  700

seq1  ACTTGTTAATTCACCCAGCTCCACATTTTCAAGTGTGTCTCCCCTGCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTAATTCACCCAGCTCCACATTTTCAAGTGTGTCTCCCCTGCCAC  750

seq1  TAAGGTTTGCAGAATGATCTCTTAAGAAGAAGGGTCACAATGGGTGCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTTGCAGAATGATCTCTTAAGAAGAAGGGTCACAATGGGTGCTAA  800

seq1  AATGAACAAATTATCCCATTAGCCACTAGCTTGTAATGGCTTTTCCTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAAATTATCCCATTAGCCACTAGCTTGTAATGGCTTTTCCTACT  850

seq1  ACTAGTTTTTAGTTGTGATGAGGTGTCCATTCCATGTTTATTAAGCACAG  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTAGTTTTTAGTTGTGATGAGGTGTCCATTCCATG-TTATTAAGCACAG  899

seq1  TCCACCTATTAACCTACCACCCAAAAGGCTGGGAGATTGGGGAATATTAT  950
      |||||||||||||||||||| ||||| ||||||||| |||||||||||||
seq2  TCCACCTATTAACCTACCACTCAAAA-GCTGGGAGA-TGGGGAATATTAT  947

seq1  TATTTACAGTTTACATGTAGGGAAACTGAGGCTTATCAAAATGAATAAGT  1000
         ||||||||||||||||||| |||||| ||||||| ||||||||||||
seq2  --ATTACAGTTTACATGTAGGG-AACTGA-GCTTATC-AAATGAATAAGT  992

seq1  TACTGGCCCAAAGGGCAACACTCAGTAGATGCAGAACTTAAGTTTAGATT  1050
      ||||||| ||||||   |||||||||||||||||||| |||| ||||| |
seq2  TACTGGCTCAAAGG--CACACTCAGTAGATGCAGAAC-TAAG-TTAGA-T  1037

seq1  AGACTAACTTACACAGTATCTGCTC  1075
      ||||||   ||| ||||||||||||
seq2  AGACTA--CTAC-CAGTATCTGCTC  1059

seq1: chr17_34682731_34683443
seq2: B6Ng01-141D03.g_104_832

seq1  AAAGAATGGACTGGGATAGGTGCCTTTGCTATGGCCCTTGTTTTGGCATG  50
      |||||||||||||||||||||||| | ||| |||||||||||||||||||
seq2  AAAGAATGGACTGGGATAGGTGCCCTCGCTGTGGCCCTTGTTTTGGCATG  50

seq1  CATGTTGTGTGTATGGTGTATGTGTCGGTTGCGGAATGCCCAGGTCCACA  100
       |||||| ||||||||||||||| | |||||| |||||||||| ||||||
seq2  TATGTTGGGTGTATGGTGTATGTATTGGTTGCAGAATGCCCAGCTCCACA  100

seq1  CTGCCGCCATGGTGGTGCAAGCTTTTGCCACAGTGAAAGCAGGG-AGTCA  149
      ||||  ||||||||||||||||||||||||||||| |||||||| |||||
seq2  CTGCTACCATGGTGGTGCAAGCTTTTGCCACAGTGGAAGCAGGGCAGTCA  150

seq1  CCTCAGATTTGGCTTGCTACCATGAAGAGTGAACAATGAAGCCATCGCTC  199
      |||||||||||| ||||| ||||||||| | |||||||||||||| ||| 
seq2  CCTCAGATTTGGTTTGCTGCCATGAAGAATAAACAATGAAGCCATTGCTT  200

seq1  CATAGGGTTGTACGGCTAAGCACTGCACAGAGGTTAGTCTGGAAGCTGTT  249
      | ||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  CGTAGGGTTGTACGGCTAAACACTGCACAGAGGTTAGTCTGGAAACTGTT  250

seq1  TGACTATCTCTGGGAGGTATGTCTGATTGCATGAGGGTTGAGTGTCCTAG  299
      |||| ||||||||||||||||||||||||||||| |||| ||||||||||
seq2  TGACAATCTCTGGGAGGTATGTCTGATTGCATGATGGTTAAGTGTCCTAG  300

seq1  TGTCCTTCACCCAGGAAAAACGGCACGGGAGCAGGTCAGGGTTGCTCTGG  349
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTCCCCCAGGAAAAACGGCACGGGAGCAGGTCAGGGTTGCTCTGG  350

seq1  GTAAAAACCTGTGAGCCTAAGAGTCAATCCTGTACATGGCCCCTATTTCT  399
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTAAAAACCTGTGAGGCTAAGAGTCAATCCTGTACATGGCCCCTATTTCT  400

seq1  GCACACTGGGGATCAGACCTCTATCTTCACCCACGGAGCTTGTTCAAAAA  449
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCACACTGGGGATCAGAGCTCTATCTTCACCCACGGAGCTTGTTCAAAAA  450

seq1  GAAAAAA--------------ATATAAAAGGGGGAATTGTAGGAAGCCAT  485
       |||| |              | ||||||| |||| ||||||||||||||
seq2  AAAAATATATATATATATATTACATAAAAGAGGGATTTGTAGGAAGCCAT  500

seq1  TCCAGGCTGTAAACAGGCCAGCCAGATGGAAGTCTGTTCCAGGTAGTAAA  535
      ||||||||||||||||||||||  |||| || ||| ||||||| ||||||
seq2  TCCAGGCTGTAAACAGGCCAGCTGGATGTAAATCTATTCCAGGCAGTAAA  550

seq1  C-AAGCCCATGTTTGGTGGATGGCCCACCCTTAATCCCTGATTGGCTGAG  584
      | ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAAAGCCCATGTTTGGTGGATGGCCCACCCTTAATCCTTGATTGGCTGAG  600

seq1  CAAGCCTGCCTGGTGAGGTGATGTGACCTGTGGTGATTGGTGGAGGCGTG  634
      ||||||||||||||||| ||||||||||||||||||||||||| ||| ||
seq2  CAAGCCTGCCTGGTGAGATGATGTGACCTGTGGTGATTGGTGGGGGCATG  650

seq1  GTTGTGGCTGGA---GAGAAAAACACTTGTAACTAGAGAGGCTGGGGGAT  681
      ||||||||||||   |||||||||||||||||  ||||||| ||||||||
seq2  GTTGTGGCTGGAGTGGAGAAAAACACTTGTAAACAGAGAGG-TGGGGGAT  699

seq1  TTGAAGTAAGTAGCTGCCTGAGTAAACTGCTT  713
      |||||| ||  | |||||||| | ||||||||
seq2  TTGAAG-AAAAAACTGCCTGA-TTAACTGCTT  729