BAC Information

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BAC

Clone NameB6Ng01-141H03
Chromosome17 (Build37)
Map Location 82,423,435 - 82,424,555
singlet/doubletsinglet
Overlap genenone
Upstream geneThumpd2, LOC100043700, LOC100043704, Slc8a1, EG668832, LOC100043707
Downstream geneLOC625467, LOC668836, EG433141, EG625514, LOC100043711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141H03.bB6Ng01-141H03.g
ACCDH939902DH939903
length1,2391,111
definitionDH939902|Mus musculus domesticus DNA, BAC clone: B6Ng01-141H03, 5' end.DH939903|Mus musculus domesticus DNA, BAC clone: B6Ng01-141H03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttagtttctttggagactgttttatcatgtgatgattttctgg
agtctgtctatgagaggatatttttgctgaaggggagaatgtttttctat
gaacagagacatggtgtttttctggaagcaacctggacaaagggcatgtg
atgttttgctagagcagctgcttgagagaacatatgatgtttggaaagga
tataaatgtaacccaacagacaggtggacgatgctggatgatattggcat
gccttaccattttttgctggtcattaacggactttgttggtgctggtctt
cattaatgatgctgggtggaattggtatgccttgccattctttcctggtc
atcattggtcatgactttatagagagaaatgcaccaaaaaatttctggtg
atgttccagccacttcttgctgcctcagctgattcaggcaattgttagag
actcaacgtttcttctgaattaacctaccattgctgattcttgaatggtg
tttgtgagtggatcaagatgctgctgctgattcctgtaaactgaactgct
ggtgtcctgacaacaaaaattgtattttctcgaaagatctctttttaaac
aggtccacatactcctttgctctattaacttttcctttccattatctctg
gtgggtggtaggctagaaggagggggcatgttaaagcattcaacgaccct
tataaaagtaggttttgaaatatttaagcctgccaagaagttaaacacaa
acaacccaaataacccaatttaaaaatgggatatatcgctaaacaagaat
tctcaacaggcgaatctcaagtggctgagaaacactttaaaaatgctcaa
agtctttagtcatcagggaaatgcaaatcaaacattctgaggtatcaact
tagtttcatcagaatatctagatcaaaactcagagagagcacatgctggt
gagatatggaacagggatacacttcatgctgagaaagcttgtacaatcac
tttggaaatcatttggctctttctcgaaacttgagatagtctacacctct
gggctatactccagaatgcttcaccattctggccaggaatttgctcactt
gttctagcacttattggtaatccagaacctgaacacctacagtgctcaac
gtggaaggtaaagaatgggatttagcaggaaatcgtcagtcaataatccg
atttgagcaagctagcttgaggatcacatcgtcgtagga
gaattcattgaacatttttagtggctctagtagatgagattcatcaattg
aaaaaaccaggaaaaacacagaattataaaattgcttacaaagagaaaat
gactttttaaatttccaaatcaagcaaacaaataagctcagtcagggagc
tggaaaatgcaaataattttacaacatcactcattttctaccatcaactg
ctggagcagtttgggaattgtctcagtaaagaagcatttgccttacagag
atgtcattgaattaagagcctcaggggcacaactcagttcaaatataaga
atggagcatgcttggcattaacactccaatccctgtgattataatctaat
gaaaatgttagtgctctttcctactgtggagtaccgttgaagaatatgga
attcagtgtcattgtgatttcacaaagagaaagctgaaagtgatttgcct
cttttcaaatagagtgctaatcatttggaagacattagcaagtagcttgt
gtgggcccctgagtttttaaagtagaccacctgtagaacagtttttgaaa
ggtataatttatattagtttaagaacagggcaatggatctttaaagcctt
agatccaaggtattacactgagtggagtgctggggaggagggaagggact
gaaagtatgtgctacaaaagaacttttacatgattttcataggttctacc
taagccagtgtgtttaatacgaaaatgttgatggggaaaattctagtctt
tcacaaaggagatattggactgctatggttttcctatcaatccagagtct
aggcaatcagctttacagaatgaatagactattcattcgttttcaaatac
taaacagaaaacgttataatcaaaaagtctttttaagatttgtactttaa
aatgcttaattgtgtggatttatggtctttatgtgggcatgtgcacatca
aagcaagtgcccacgagccagaggcattagattcctcctagactgaagtg
tagtgcttgtaagacatccaatctgggccgctgggatatgatcttgtatc
cttctgaagaaccatccaagtgccttatagtaatcaatggacaataggaa
agctgttctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_82423435_82424555
seq2: B6Ng01-141H03.g_68_1178

seq1  GAATTCATTGAACATTTTTAGTGGCTCTAGTAGATGAGATTCATCAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAACATTTTTAGTGGCTCTAGTAGATGAGATTCATCAATTG  50

seq1  AAAAAACCAGGAAAAACACAGAATTATAAAATTGCTTACAAAGAGAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCAGGAAAAACACAGAATTATAAAATTGCTTACAAAGAGAAAAT  100

seq1  GACTTTTTAAATTTCCAAATCAAGCAAACAAATAAGCTCAGTCAGGGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTTAAATTTCCAAATCAAGCAAACAAATAAGCTCAGTCAGGGAGC  150

seq1  TGGAAAATGCAAATAATTTTACAACATCACTCATTTTCTACCATCAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATGCAAATAATTTTACAACATCACTCATTTTCTACCATCAACTG  200

seq1  CTGGAGCAGTTTGGGAATTGTCTCAGTAAAGAAGCATTTGCCTTACAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCAGTTTGGGAATTGTCTCAGTAAAGAAGCATTTGCCTTACAGAG  250

seq1  ATGTCATTGAATTAAGAGCCTCAGGGGCACAACTCAGTTCAAATATAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATTGAATTAAGAGCCTCAGGGGCACAACTCAGTTCAAATATAAGA  300

seq1  ATGGAGCATGCTTGGCATTAACACTCCAATCCCTGTGATTATAATCTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCATGCTTGGCATTAACACTCCAATCCCTGTGATTATAATCTAAT  350

seq1  GAAAATGTTAGTGCTCTTTCCTACTGTGGAGTACCGTTGAAGAATATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTTAGTGCTCTTTCCTACTGTGGAGTACCGTTGAAGAATATGGA  400

seq1  ATTCAGTGTCATTGTGATTTCACAAAGAGAAAGCTGAAAGTGATTTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGTCATTGTGATTTCACAAAGAGAAAGCTGAAAGTGATTTGCCT  450

seq1  CTTTTCAAATAGAGTGCTAATCATTTGGAAGACATTAGCAAGTAGCTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAAATAGAGTGCTAATCATTTGGAAGACATTAGCAAGTAGCTTGT  500

seq1  GTGGGCCCCTGAGTTTTTAAAGTAGACCACCTGTAGAACAGTTTTTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCCCCTGAGTTTTTAAAGTAGACCACCTGTAGAACAGTTTTTGAAA  550

seq1  GGTATAATTTATATTAGTTTAAGAACAGGGCAATGGATCTTTAAAGCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAATTTATATTAGTTTAAGAACAGGGCAATGGATCTTTAAAGCCTT  600

seq1  AGATCCAAGGTATTACACTGAGTGGAGTGCTGGGGAGGAGGGAAGGGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAAGGTATTACACTGAGTGGAGTGCTGGGGAGGAGGGAAGGGACT  650

seq1  GAAAGTATGTGCTACAAAAGAACTTTTACATGATTTTCATAGGTTCTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATGTGCTACAAAAGAACTTTTACATGATTTTCATAGGTTCTACC  700

seq1  TAAGCCAGTGTGTTTAATACGAAAATGTTGATGGGGAAAATTCTAGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAGTGTGTTTAATACGAAAATGTTGATGGGGAAAATTCTAGTCTT  750

seq1  TCACAAAGGAGATATTGGACTGCTATGGTTTTCCTATCAATCCAGAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGGAGATATTGGACTGCTATGGTTTTCCTATCAATCCAGAGTCT  800

seq1  AGGCAATCAGCTTTACAGAATGAATAGACTATTCATTCGTTTTCAAATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATCAGCTTTACAGAATGAATAGACTATTCATTCGTTTTCAAATAC  850

seq1  TAAACAGAAAACGTTATAATCAAAAAGTCCTTTTTAAGATTTGTACTTTA  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAAACAGAAAACGTTATAATCAAAAAGT-CTTTTTAAGATTTGTACTTTA  899

seq1  AAATGCTTAATTGTGTGGATTTATGGTCTTTATGTGGGCATGTGCACATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTAATTGTGTGGATTTATGGTCTTTATGTGGGCATGTGCACATC  949

seq1  AAAGCAAGTGCCCACGAGGCCAGAGGCATTAGATT-CTCCTAGAACTGAA  999
      ||||||||||||||||| ||||||||||||||||| ||||||| ||||||
seq2  AAAGCAAGTGCCCACGA-GCCAGAGGCATTAGATTCCTCCTAG-ACTGAA  997

seq1  GTTGTAGGTGCTTGTAAGACATCCAATCTGGGCAGCTGGGATATGATCTT  1049
      | |||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  G-TGTA-GTGCTTGTAAGACATCCAATCTGGGCCGCTGGGATATGATCTT  1045

seq1  GTATCCTTCTGAAGATCAATCCAAGTGCCCTATAGTTAATCAATGAACAA  1099
      ||||||||||||||| | ||||||||||| ||||| ||||||||| ||||
seq2  GTATCCTTCTGAAGAACCATCCAAGTGCCTTATAG-TAATCAATGGACAA  1094

seq1  ATAAGGAAATAGCTGTTTCTAC  1121
         |||||  ||||| ||||||
seq2  --TAGGAA--AGCTG-TTCTAC  1111