BAC Information

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BAC

Clone NameB6Ng01-141H16
Chromosome17 (Build37)
Map Location 20,320,429 - 20,446,109
singlet/doubletdoublet
Overlap geneEG627743, EG224576
Upstream geneLOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6
Downstream geneV2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141H16.bB6Ng01-141H16.g
ACCDH939928DH939929
length1,0741,048
definitionDH939928|Mus musculus domesticus DNA, BAC clone: B6Ng01-141H16, 5' end.DH939929|Mus musculus domesticus DNA, BAC clone: B6Ng01-141H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,445,012 - 20,446,109)(20,320,429 - 20,321,491)
sequence
gaattctctgtttagatctgtacccagttttttaatagggttatttgttt
ctctagagtctaacttcttgagttcccagaatactttggatattaatcct
ctatgcgaagtaggaatggaaaatatcttttcctaatatgtggtttgttg
ttttgtcctattgacagtgtccttaaccttatagaatctttcaatttttt
gaggttccatttgccaattttgatcttagagcatgagctatttgtattct
gttcaggacattttcccctatgctgatgtgttcgaacatctttctcttcc
attagattcaacatatatgttttgttttttgggttttttgttgttgttgt
tgtcatttttattggatattttaagtattccctttacaaatgttatcccc
cttttccatatctggttttatatggaggaccttcatgacttgtgctttga
acaggagataagaaagaaacaatttgaatatttctacatgaaaaccatca
cttgaaccagaaccatttggtgaaaattctgtctttttttccccactgga
tggttttggcttatttgtcaaataacaagtaaaaataggtgtgtggtttc
atttctgggtcttcaaatcttttccactggtcttcctaatatgtgtccta
ataatggaaataaggtgtgtttttcccaataagaccatcctatccctaga
atgccttcttatatctgtactgatccaggagatacgggcctaatgtagag
taataacattttaaaatccttgtgaaaatgtgagaactatgttgggagtc
tccaagtgcaaaatgtacaaaacaaacagcccaacaaaaaaataaaataa
aaataaacccataggattgaatgagattatgttcagtgtgaaaatgctat
ttgtttggtgaaatttatcgaggtatcactctttaaatcaagagagtgag
aagaaaagtttaatttaaaataaattgacaattgttactttgaagaattg
ttttgaaaattatagcaatatggctataaaatgatgatatttatgggcag
tggtggtggccatgcctttaatcc
gaattcagctaaatgatttagaatgtttagggtggggtttattttctagc
aaagcataagtacgagttgggagggggatactggattgtgttaaaaaatt
gtagattatgtctttttaattctagttgtaatgttgataccactgttcca
acatttttctttacctattggttctccattttatttaattatccttctgg
ggacaccttgtcacaagaagacactgttcagtaaattacatagattacaa
taaaatctatgtaattttggtcaatccacttcttctgtcactttcactat
tgtgattttcaaagagctgttttctgattatgaggtgtataaaacattta
ctacggtatgatttatgtcactattccacaaatcatcacacagcatacat
cctttgttcctatttccataactgtctgtgtgcttgtatgaaatcacatt
catgtttgtgcacttatgtttatatagttcactataaacttacttcaaca
attgaaattataggagagactcctgtcactgtctggaacttactgaagat
actagatgaccaggcaatatgcagcaggtgtttacattaaagcctcccca
ataagatgaccacaaagcatctccacttcttcggccttcatttttcaaca
caaggacattaccaagtgacctatccccatagccatagaataaatttagg
atgtatcatcatatatttttctgggcaagaaaaaaaataattttatattc
catccagtactcagacattatgattatcttgtgtgtggcaacaataaaat
tttgaaacattttagatattatatggaagcgtgcaagtgtgtcatcagaa
tgcctaatgacaaaaggaatttcaagggatatatatatatatatatatat
atatatatcatggaagtgcaaatatcttacttctacttctttgtcaagct
tatgtaggttaatgctaattctgtcatgaaacattcaaaaaccttacaat
atattttcttctctcaaaatatattttcattgaatttggggcaagtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_20445012_20446109
seq2: B6Ng01-141H16.b_45_1118 (reverse)

seq1  GGATTAAAGGCATGCGCCACCACCACCTGGCACCATAAAATATCATCATT  50
      |||||||||||||| |||||||||| |||   |||| |||||||||||||
seq2  GGATTAAAGGCATG-GCCACCACCA-CTG--CCCAT-AAATATCATCATT  45

seq1  TTAATAGCCATATTTGCTATTAATTTTTTCAAAACAATTCTGTCAAAGTA  100
      || ||||||||| ||||||| |   |||||||||||||||| ||||||||
seq2  TT-ATAGCCATA-TTGCTATAA---TTTTCAAAACAATTCT-TCAAAGTA  89

seq1  ACAATATGTTCAATTTATTTTTAAATTTATAACTTTTTCTTCTCCACTCT  150
      ||||| || |||||||| ||||||||   |||  ||||||||| ||||||
seq2  ACAAT-TG-TCAATTTA-TTTTAAAT---TAAACTTTTCTTCT-CACTCT  132

seq1  CTTTGATTTAAAGAGTTGATACCTCGATAAATTTTCACCAAACAAATAGC  200
      | ||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  C-TTGATTTAAAGAG-TGATACCTCGATAAA-TTTCACCAAACAAATAGC  179

seq1  ATTTTCACACTGAACATAATTCTCATTCAATCCTATGGGTTTTATTTTTT  250
      ||||||||||||||||||| ||||||||||||||||||||||   |||||
seq2  ATTTTCACACTGAACATAA-TCTCATTCAATCCTATGGGTTT--ATTTTT  226

seq1  ATTTTATTTTTTTGTTTGGCTGTTTGTTTTGTACATTTTGCACTTGGAGA  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTTTTGTTGGGCTGTTTGTTTTGTACATTTTGCACTTGGAGA  276

seq1  CTCCCAACATAGTTCTCACATTTTCACAAGGATTTTAAAATGTTATTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAACATAGTTCTCACATTTTCACAAGGATTTTAAAATGTTATTACT  326

seq1  CTACATTAGGCCCGTATCTCCTGGATCAGTACAGATATAAGAAGGCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTAGGCCCGTATCTCCTGGATCAGTACAGATATAAGAAGGCATTC  376

seq1  TAGGGATAGGATGGTCTTATTGGGAAAAACACACCTTATTTCCATTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATAGGATGGTCTTATTGGGAAAAACACACCTTATTTCCATTATTA  426

seq1  GGACACATATTAGGAAGACCAGTGGAAAAGATTTGAAGACCCAGAAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACATATTAGGAAGACCAGTGGAAAAGATTTGAAGACCCAGAAATGA  476

seq1  AACCACACACCTATTTTTACTTGTTATTTGACAAATAAGCCAAAACCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACACCTATTTTTACTTGTTATTTGACAAATAAGCCAAAACCATC  526

seq1  CAGTGGGGAAAAAAAGACAGAATTTTCACCAAATGGTTCTGGTTCAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGGAAAAAAAGACAGAATTTTCACCAAATGGTTCTGGTTCAAGTG  576

seq1  ATGGTTTTCATGTAGAAATATTCAAATTGTTTCTTTCTTATCTCCTGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTCATGTAGAAATATTCAAATTGTTTCTTTCTTATCTCCTGTTC  626

seq1  AAAGCACAAGTCATGAAGGTCCTCCATATAAAACCAGATATGGAAAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACAAGTCATGAAGGTCCTCCATATAAAACCAGATATGGAAAAGGG  676

seq1  GGATAACATTTGTAAAGGGAATACTTAAAATATCCAATAAAAATGACAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACATTTGTAAAGGGAATACTTAAAATATCCAATAAAAATGACAAC  726

seq1  AACAACAACAAAAAACCCAAAAAACAAAACATATATGTTGAATCTAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAAAAAACCCAAAAAACAAAACATATATGTTGAATCTAATGG  776

seq1  AAGAGAAAGATGTTCGAACACATCAGCATAGGGGAAAATGTCCTGAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAGATGTTCGAACACATCAGCATAGGGGAAAATGTCCTGAACAG  826

seq1  AATACAAATAGCTCATGCTCTAAGATCAAAATTGGCAAATGGAACCTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAATAGCTCATGCTCTAAGATCAAAATTGGCAAATGGAACCTCAA  876

seq1  AAAATTGAAAGATTCTATAAGGTTAAGGACACTGTCAATAGGACAAAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGAAAGATTCTATAAGGTTAAGGACACTGTCAATAGGACAAAACA  926

seq1  ACAAACCACATATTAGGAAAAGATATTTTCCATTCCTACTTCGCATAGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCACATATTAGGAAAAGATATTTTCCATTCCTACTTCGCATAGAG  976

seq1  GATTAATATCCAAAGTATTCTGGGAACTCAAGAAGTTAGACTCTAGAGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATATCCAAAGTATTCTGGGAACTCAAGAAGTTAGACTCTAGAGAA  1026

seq1  ACAAATAACCCTATTAAAAAACTGGGTACAGATCTAAACAGAGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAACCCTATTAAAAAACTGGGTACAGATCTAAACAGAGAATTC  1074

seq1: chr17_20320429_20321491
seq2: B6Ng01-141H16.g_68_1115

seq1  GAATTCAGCTAAATGATTTAGAATGTTTAGGGTGGGGTTTATTTTCTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTAAATGATTTAGAATGTTTAGGGTGGGGTTTATTTTCTAGC  50

seq1  AAAGCATAAGTACGAGTTGGGAGGGGGATACTGGATTGTGTTAAAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATAAGTACGAGTTGGGAGGGGGATACTGGATTGTGTTAAAAAATT  100

seq1  GTAGATTATGTCTTTTTAATTCTAGTTGTAATGTTGATACCACTGTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTATGTCTTTTTAATTCTAGTTGTAATGTTGATACCACTGTTCCA  150

seq1  ACATTTTTCTTTACCTATTGGTTCTCCATTTTATTTAATTATCCTTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTCTTTACCTATTGGTTCTCCATTTTATTTAATTATCCTTCTGG  200

seq1  GGACACCTTGTCACAAGAAGACACTGTTCAGTAAATTACATAGATTACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCTTGTCACAAGAAGACACTGTTCAGTAAATTACATAGATTACAA  250

seq1  TAAAATCTATGTAATTTTGGTCAATCCACTTCTTCTGTCACTTTCACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTATGTAATTTTGGTCAATCCACTTCTTCTGTCACTTTCACTAT  300

seq1  TGTGATTTTCAAAGAGCTGTTTTCTGATTATGAGGTGTATAAAACATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTTCAAAGAGCTGTTTTCTGATTATGAGGTGTATAAAACATTTA  350

seq1  CTACGGTATGATTTATGTCACTATTCCACAAATCATCACACAGCATACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGGTATGATTTATGTCACTATTCCACAAATCATCACACAGCATACAT  400

seq1  CCTTTGTTCCTATTTCCATAACTGTCTGTGTGCTTGTATGAAATCACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTCCTATTTCCATAACTGTCTGTGTGCTTGTATGAAATCACATT  450

seq1  CATGTTTGTGCACTTATGTTTATATAGTTCACTATAAACTTACTTCAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTGTGCACTTATGTTTATATAGTTCACTATAAACTTACTTCAACA  500

seq1  ATTGAAATTATAGGAGAGACTCCTGTCACTGTCTGGAACTTACTGAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATTATAGGAGAGACTCCTGTCACTGTCTGGAACTTACTGAAGAT  550

seq1  ACTAGATGACCAGGCAATATGCAGCAGGTGTTTACATTAAAGCCTCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATGACCAGGCAATATGCAGCAGGTGTTTACATTAAAGCCTCCCCA  600

seq1  ATAAGATGACCACAAAGCATCTCCACTTCTTCGGCCTTCATTTTTCAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATGACCACAAAGCATCTCCACTTCTTCGGCCTTCATTTTTCAACA  650

seq1  CAAGGACATTACCAAGTGACCTATCCCCATAGCCATAGAATAAATTTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACATTACCAAGTGACCTATCCCCATAGCCATAGAATAAATTTAGG  700

seq1  ATGTATCATCATATATTTTTCTGGGCAAGAAAAAAAATAATTTTATATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCATCATATATTTTTCTGGGCAAGAAAAAAAATAATTTTATATTC  750

seq1  CATCCAGTACTCAGACATTATGATTATCTTGTGTGTGGCAACAATAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGTACTCAGACATTATGATTATCTTGTGTGTGGCAACAATAAAAT  800

seq1  TTTGAAACATTTTAGATATTAATATGGAAGCGTGCAAGTGTGTCATCAAG  850
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  TTTGAAACATTTTAGATATT-ATATGGAAGCGTGCAAGTGTGTCATC-AG  848

seq1  AATGCCTAATGACAAAAGGAATTTCAAGGGATATATATATATATATATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTAATGACAAAAGGAATTTCAAGGGATATATATATATATATATAT  898

seq1  ATATATATATCATGGAAGTGCAAATAATCTTACTTCTACCTTCTTTGTCA  950
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  ATATATATATCATGGAAGTGCAAAT-ATCTTACTTCTA-CTTCTTTGTCA  946

seq1  AGCTTATGTTAGGTTTAATGCTAATTCTGTCCATGAAACAATACAAAAAC  1000
      |||||||| |||| |||||||||||||||| |||||||| || |||||||
seq2  AGCTTATG-TAGG-TTAATGCTAATTCTGT-CATGAAAC-ATTCAAAAAC  992

seq1  ACTTAACAATATATTCTCCTTCTCTCAAAAATATATTTTTCATTGTATTC  1050
       ||| |||||||||| | |||||||| |||||||| ||||||||| ||  
seq2  -CTT-ACAATATATT-TTCTTCTCTC-AAAATATA-TTTTCATTGAAT--  1035

seq1  TGGGGGCAAGTGC  1063
      | |||||||||||
seq2  TTGGGGCAAGTGC  1048