BAC Information

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BAC

Clone NameB6Ng01-141N23
Chromosome17 (Build37)
Map Location 57,207,189 - 57,374,374
singlet/doubletdoublet
Overlap geneDennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108
Upstream geneChaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3
Downstream geneTrip10, LOC668635, Vav1, Emr1, EG224916, Cntnap5c, LOC674419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141N23.bB6Ng01-141N23.g
ACCDH940216DH940217
length508680
definitionDH940216|Mus musculus domesticus DNA, BAC clone: B6Ng01-141N23, 5' end.DH940217|Mus musculus domesticus DNA, BAC clone: B6Ng01-141N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,207,189 - 57,207,702)(57,373,697 - 57,374,374)
sequence
accttgggcggtcttaccttaatcgtgagcaggttctgcatacccttcaa
gccactctttgcctaggtgatgacccgacacagtatcagacacaagtgtt
ttctaaccccattccacctttgtatcttccaagctatgtttatacctttg
atgcacaatattcctggagggagtcaccctgccataaaccaaaggtttga
ccactgtatataggattaaaatcaaatggacagatctgaaatgtaaaggc
tggtctgaaagaatatttgagctccagacctccttctccccccactccca
aatcaagaatggaagctaagtaacaaaaggtaattgatggatcttggctg
tcagagtttgtgtgtgtgtttaattttatttatgtatttgtttgggggag
agggaacattcgtcatggcactggtgtggggggcagagtacaacgtgggg
agtcaattctcatgcagattctagggatcaaaatcttgtcaagtttgaca
gcaagaat
gaattcccagtgaggggaggaccacctgttgagctaaagctgtgcggagc
cctgtgctgctggggacagcacgaccaagtccccactcccatcccaaccc
ttaaggatctttcaagtcaccagccccagcttgggggtcacacaggaact
gacccagccacagacgtctggaagggaaaaggaaaggtgatgccgaaccc
gtgtcccctgaagagggcaccaccgggctgtaggaatggtgggtgaagtg
cttgccatgtcttgccaggactggagcacagatcctaaagcctccataaa
gatctgtgtaagcctcgaaaaacaaaaaacgatctgtgtaagcttgcaac
cctggcactgaggagatggaggcagcagatccctagtcctagccacctag
ccagcctagcctacttcatgcagcccaggccctttagattgcactgcttc
agaactgggatgggtggcccctgagcaacagcaggcaaggctgacctatg
gccaccacacctgcagacacacagtcagtgtgggttaatgaatgccaagt
acctaaggccgaggccacccagtaaaagtaatggctgcccggcatgacgg
ttcaagcctttaactcctatattcagaaagctgaggcaagagagttaact
agggttttgaggctagcccggggctagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_57207189_57207702
seq2: B6Ng01-141N23.b_48_561

seq1  GAATTCACCTTGGGCGGTCTTACCTTAATCGTGAGCAGGTTCTGCATACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTGGGCGGTCTTACCTTAATCGTGAGCAGGTTCTGCATACC  50

seq1  CTTCAAGCCACTCTTTGCCTAGGTGATGACCCGACACAGTATCAGACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGCCACTCTTTGCCTAGGTGATGACCCGACACAGTATCAGACACA  100

seq1  AGTGTTTTCTAACCCCATTCCACCTTTGTATCTTCCAAGCTATGTTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTCTAACCCCATTCCACCTTTGTATCTTCCAAGCTATGTTTATA  150

seq1  CCTTTGATGCACAATATTCCTGGAGGGAGTCACCCTGCCATAAACCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGATGCACAATATTCCTGGAGGGAGTCACCCTGCCATAAACCAAAG  200

seq1  GTTTGACCACTGTATATAGGATTAAAATCAAATGGACAGATCTGAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACCACTGTATATAGGATTAAAATCAAATGGACAGATCTGAAATGT  250

seq1  AAAGGCTGGTCTGAAAGAATATTTGAGCTCCAGACCTCCTTCTCCCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGGTCTGAAAGAATATTTGAGCTCCAGACCTCCTTCTCCCCCCA  300

seq1  CTCCCAAATCAAGAATGGAAGCTAAGTAACAAAAGGTAATTGATGGATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAATCAAGAATGGAAGCTAAGTAACAAAAGGTAATTGATGGATCT  350

seq1  TGGCTGTCAGAGTTTGTGTGTGTGTTTAATTTTATTTATGTATTTGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCAGAGTTTGTGTGTGTGTTTAATTTTATTTATGTATTTGTTTG  400

seq1  GGGGAGAGGGAACATTCGTCATGGCACTGGTGTGGGGGGCAGAGTACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAGGGAACATTCGTCATGGCACTGGTGTGGGGGGCAGAGTACAAC  450

seq1  GTGGGGAGTCAATTCTCATGCAGATTCTAGGGATCAAAATCTTGTCAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAGTCAATTCTCATGCAGATTCTAGGGATCAAAATCTTGTCAAGT  500

seq1  TTGACAGCAAGAAT  514
      ||||||||||||||
seq2  TTGACAGCAAGAAT  514

seq1: chr17_57373697_57374374
seq2: B6Ng01-141N23.g_68_747 (reverse)

seq1  TCTCTAG-CCCGGGCTAGCCTC-AAACCCTAGTTAACTCTCTTGCCTCAG  48
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  TCTCTAGCCCCGGGCTAGCCTCAAAACCCTAGTTAACTCTCTTGCCTCAG  50

seq1  CTTTCTGAATATAGGAGTTAAAGGCTTGAACCGTCATGCCGGGCAGCCAT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGAATATAGGAGTTAAAGGCTTGAACCGTCATGCCGGGCAGCCAT  100

seq1  TACTTTTACTGGGTGGCCTCGGCCTTAGGTACTTGGCATTCATTAACCCA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTACTGGGTGGCCTCGGCCTTAGGTACTTGGCATTCATTAACCCA  150

seq1  CACTGACTGTGTGTCTGCAGGTGTGGTGGCCATAGGTCAGCCTTGCCTGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTGTGTGTCTGCAGGTGTGGTGGCCATAGGTCAGCCTTGCCTGC  200

seq1  TGTTGCTCAGGGGCCACCCATCCCAGTTCTGAAGCAGTGCAATCTAAAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTCAGGGGCCACCCATCCCAGTTCTGAAGCAGTGCAATCTAAAGG  250

seq1  GCCTGGGCTGCATGAAGTAGGCTAGGCTGGCTAGGTGGCTAGGACTAGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGCTGCATGAAGTAGGCTAGGCTGGCTAGGTGGCTAGGACTAGGG  300

seq1  ATCTGCTGCCTCCATCTCCTCAGTGCCAGGGTTGCAAGCTTACACAGATC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTGCCTCCATCTCCTCAGTGCCAGGGTTGCAAGCTTACACAGATC  350

seq1  GTTTTTTGTTTTTCGAGGCTTACACAGATCTTTATGGAGGCTTTAGGATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTTTTCGAGGCTTACACAGATCTTTATGGAGGCTTTAGGATC  400

seq1  TGTGCTCCAGTCCTGGCAAGACATGGCAAGCACTTCACCCACCATTCCTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCCAGTCCTGGCAAGACATGGCAAGCACTTCACCCACCATTCCTA  450

seq1  CAGCCCGGTGGTGCCCTCTTCAGGGGACACGGGTTCGGCATCACCTTTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCGGTGGTGCCCTCTTCAGGGGACACGGGTTCGGCATCACCTTTCC  500

seq1  TTTTCCCTTCCAGACGTCTGTGGCTGGGTCAGTTCCTGTGTGACCCCCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTTCCAGACGTCTGTGGCTGGGTCAGTTCCTGTGTGACCCCCAA  550

seq1  GCTGGGGCTGGTGACTTGAAAGATCCTTAAGGGTTGGGATGGGAGTGGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGCTGGTGACTTGAAAGATCCTTAAGGGTTGGGATGGGAGTGGGG  600

seq1  ACTTGGTCGTGCTGTCCCCAGCAGCACAGGGCTCCGCACAGCTTTAGCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTCGTGCTGTCCCCAGCAGCACAGGGCTCCGCACAGCTTTAGCTC  650

seq1  AACAGGTGGTCCTCCCCTCACTGGGAATTC  678
      ||||||||||||||||||||||||||||||
seq2  AACAGGTGGTCCTCCCCTCACTGGGAATTC  680