BAC Information

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BAC

Clone NameB6Ng01-143D22
Chromosome17 (Build37)
Map Location 25,390,072 - 25,549,790
singlet/doubletdoublet
Overlap geneUbe2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h
Upstream geneAbca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik
Downstream geneTekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143D22.bB6Ng01-143D22.g
ACCDH941232DH941233
length1,121731
definitionDH941232|Mus musculus domesticus DNA, BAC clone: B6Ng01-143D22, 5' end.DH941233|Mus musculus domesticus DNA, BAC clone: B6Ng01-143D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,390,072 - 25,391,195)(25,549,060 - 25,549,790)
sequence
gaattcttgcttctcttatgtttgatgaatttccagatcctacctacatc
gaggaggaagagctgcggcatccacgtccacataaccttccgctcagttt
taccctgcagaccccaagtttaagactagtacagtatctaagataccatg
acctattgagtgccctgtttttaaaacaccaccctgccacccccccccca
ccctgggtcacacaaccacttctgggtctgggccttccccacactacccc
aggtcggtcctctctctactgaggaaaacaatcccacaccacagagcacc
tactccttgggctccctgtcttgttggctcattaataagagacccgtgcc
tgccatccactacaggacattggtacccgtctacccagttgcaaggggag
actgtcatttccatggcgtaagacaggaaatggattccgaggcaggttct
gctcctggcccagggtctccggcagtcagaggatgcagcttctttctgct
agggagccttctgtggcaagaagccctttcttcaccctccctccatttcc
actatccccactggctcagcagtcctccgctgtgctgcatcctgacccct
ttgctcctgcgagttcctatctgatgagcccccacagctgcagaggtgat
ggaggccaggtggctctgcacgctgaggagaagccccacaaacctctcaa
atgtggggacccagtaagcttttgccacacatagccagcctgtcctgagg
tcccaggtgtcacaagccagctccccccaactaaaaggagagctgctccc
ccttgcgctcccctgcgccccaagccaggaaagcagccggcttcttgagc
tgttgccaaggcaaccaccagccgccatctatgtgtggacggtgccatgg
ggggcttgcagtcctaaagaaaatgttacgcagaatcaaattagctgaaa
gcgctggacgaagtgggcgtgccccccactgccctgcctcaaaacaagaa
aacagtgttgggcttggatacaatgcccagggtcaccacggcaggtggta
gcctgaaatttaaggctctgctgggcaatatatttaattttttcttggat
gctgcgcttgggttcagctct
gaattcttagcttgcatagctcaccagtagctctgactggtgctccatgt
ctccttagggtcacctcagagcccaaaggatgtttgtgggactcaccagc
ttagttcctgaggttaagcagaggccagggtcatcagcctgccctgccct
ggggtgatttgtataacataggtcagacctagggacaggaaagggggaca
tcgggatttgtgctaagtggttgatatctggaggaggggaggtgccttcc
tagagcatcatgaagacccctaggatattggggtatgatgctggtatagt
tactgagcttatggtctgaaggtatagataaatgcagtggcccataggaa
ccctggccagtgggaagtgtgtgtgtgggagggtctttgctggtaccaaa
tggggtgttccaaagcctagctagacagctagagtaaatgggaaccccgg
catagtgggggcgctcaggtgtgagcccttgttctccaatgaggttgcac
ctaatgtcctgccctcgagacagtgactgctctactgggggtgggggcgt
gtgtctcaggatcctgtcagcatatgcagctagagcgaggccctagtgct
ttatcctaatgatgtttaaaaccccagaaactcgggagtgggggaacagc
ttagtatctaagagtgtggactgctcttggagagacccacattgggttcc
catcacccacaactcacttgtaacctacagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_25390072_25391195
seq2: B6Ng01-143D22.b_46_1166

seq1  GAATTCTTGCTTCTCTTATGTTTGATGAATTTCCAGATCCTACCTACATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTTCTCTTATGTTTGATGAATTTCCAGATCCTACCTACATC  50

seq1  GAGGAGGAAGAGCTGCGGCATCCACGTCCACATAACCTTCCGCTCAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAAGAGCTGCGGCATCCACGTCCACATAACCTTCCGCTCAGTTT  100

seq1  TACCCTGCAGACCCCAAGTTTAAGACTAGTACAGTATCTAAGATACCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGCAGACCCCAAGTTTAAGACTAGTACAGTATCTAAGATACCATG  150

seq1  ACCTATTGAGTGCCCTGTTTTTAAAACACCACCCTGCCACCCCCCCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTGAGTGCCCTGTTTTTAAAACACCACCCTGCCACCCCCCCCCCA  200

seq1  CCCTGGGTCACACAACCACTTCTGGGTCTGGGCCTTCCCCACACTACCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGTCACACAACCACTTCTGGGTCTGGGCCTTCCCCACACTACCCC  250

seq1  AGGTCGGTCCTCTCTCTACTGAGGAAAACAATCCCACACCACAGAGCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCGGTCCTCTCTCTACTGAGGAAAACAATCCCACACCACAGAGCACC  300

seq1  TACTCCTTGGGCTCCCTGTCTTGTTGGCTCATTAATAAGAGACCCGTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTTGGGCTCCCTGTCTTGTTGGCTCATTAATAAGAGACCCGTGCC  350

seq1  TGCCATCCACTACAGGACATTGGTACCCGTCTACCCAGTTGCAAGGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCCACTACAGGACATTGGTACCCGTCTACCCAGTTGCAAGGGGAG  400

seq1  ACTGTCATTTCCATGGCGTAAGACAGGAAATGGATTCCGAGGCAGGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATTTCCATGGCGTAAGACAGGAAATGGATTCCGAGGCAGGTTCT  450

seq1  GCTCCTGGCCCAGGGTCTCCGGCAGTCAGAGGATGCAGCTTCTTTCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGGCCCAGGGTCTCCGGCAGTCAGAGGATGCAGCTTCTTTCTGCT  500

seq1  AGGGAGCCTTCTGTGGCAAGAAGCCCTTTCTTCACCCTCCCTCCATTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCCTTCTGTGGCAAGAAGCCCTTTCTTCACCCTCCCTCCATTTCC  550

seq1  ACTATCCCCACTGGCTCAGCAGTCCTCCGCTGTGCTGCATCCTGACCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCCCACTGGCTCAGCAGTCCTCCGCTGTGCTGCATCCTGACCCCT  600

seq1  TTGCTCCTGCGAGTTCCTATCTGATGAGCCCCCACAGCTGCAGAGGTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCTGCGAGTTCCTATCTGATGAGCCCCCACAGCTGCAGAGGTGAT  650

seq1  GGAGGCCAGGTGGCTCTGCACGCTGAGGAGAAGCCCCACAAACCTCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCAGGTGGCTCTGCACGCTGAGGAGAAGCCCCACAAACCTCTCAA  700

seq1  ATGTGGGGACCCAGTAAGCTTTTGCCACACATAGCCAGCCTGTCCTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGGACCCAGTAAGCTTTTGCCACACATAGCCAGCCTGTCCTGAGG  750

seq1  TCCCAGGTGTCACAAGCCCAGCTCCCCCCAACTAAAAGGAGAGCTGCTCC  800
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCCAGGTGTCACAAG-CCAGCTCCCCCCAACTAAAAGGAGAGCTGCTCC  799

seq1  CCCTTGCGCTCCCCCTGCGCCCCAAGCCAGGAAAGCAGCC-GCTTCTTGA  849
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  CCCTTGCGCT-CCCCTGCGCCCCAAGCCAGGAAAGCAGCCGGCTTCTTGA  848

seq1  GCTGTTGCCAAGGCAACCACCAGCCG-CATCTATGTGT-GACGGGGCCAT  897
      |||||||||||||||||||||||||| ||||||||||| ||||| |||||
seq2  GCTGTTGCCAAGGCAACCACCAGCCGCCATCTATGTGTGGACGGTGCCAT  898

seq1  -GGGGGCTTGCAGTCCTAGAGAAAAATGTGACGCAGAAGCAAAGTAAGCT  946
       ||||||||||||||||| || ||||||| |||||||| |||| | ||||
seq2  GGGGGGCTTGCAGTCCTAAAG-AAAATGTTACGCAGAATCAAA-TTAGCT  946

seq1  GACAGCGCTGGAGCGAAGGTGGCGTGCACCCCACTGCCCTGCCTC-AAAC  995
      || ||||||||| |||||  ||||||| ||||||||||||||||| ||||
seq2  GAAAGCGCTGGA-CGAAGTGGGCGTGCCCCCCACTGCCCTGCCTCAAAAC  995

seq1  AAGGAGACAGGTGTGGGCTTGG-GAGCATGCCCAGGGTCACCACCGGCAG  1044
      ||| | ||||   |||||||||  |  |||||||||||||||| ||||||
seq2  AAGAAAACAGTGTTGGGCTTGGATACAATGCCCAGGGTCACCA-CGGCAG  1044

seq1  GTGGTAGCCTGAGATTTAAGGCTCTGCTGTGCAAACATTATTATATTTTC  1094
      |||||||||||| |||||||||||||||| || || ||  |||  |||| 
seq2  GTGGTAGCCTGAAATTTAAGGCTCTGCTGGGC-AATATATTTAATTTTTT  1093

seq1  CTGGGATGCCCTGCGCTTGGGTTCAGCTCT  1124
      || |||||  ||||||||||||||||||||
seq2  CTTGGATG--CTGCGCTTGGGTTCAGCTCT  1121

seq1: chr17_25549060_25549790
seq2: B6Ng01-143D22.g_72_802 (reverse)

seq1  ACTGTA-GTTACAAGTGAGTTGTGGGTGCTGGGAACCCAATGTGGGTCCT  49
      |||||| ||||||||||||||||||||| |||||||||||||||||| ||
seq2  ACTGTAGGTTACAAGTGAGTTGTGGGTGATGGGAACCCAATGTGGGT-CT  49

seq1  CTGCAAGAGCAGTCCACACTCTTAGCTACTGAGCTGTTCCCCCACTCCCG  99
      || |||||||||||||||||||||| |||| |||||||||||||||||||
seq2  CTCCAAGAGCAGTCCACACTCTTAGATACTAAGCTGTTCCCCCACTCCCG  99

seq1  AGTTTCTGGGGTTTTAAACATCATTAGGATAAAGCACTAGGGCCTCGCTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGGGGTTTTAAACATCATTAGGATAAAGCACTAGGGCCTCGCTC  149

seq1  TAGCTGCATATGCTGACAGGATCCTGAGACACACGCCCCCACCCCCAGTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCATATGCTGACAGGATCCTGAGACACACGCCCCCACCCCCAGTA  199

seq1  GAGCAGTCACTGTCTCGAGGGCAGGACATTAGGTGCAACCTCATTGGAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCACTGTCTCGAGGGCAGGACATTAGGTGCAACCTCATTGGAGA  249

seq1  ACAAGGGCTCACACCTGAGCGCCCCCACTATGCCGGGGTTCCCATTTACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGCTCACACCTGAGCGCCCCCACTATGCCGGGGTTCCCATTTACT  299

seq1  CTAGCTGTCTAGCTAGGCTTTGGAACACCCCATTTGGTACCAGCAAAGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGTCTAGCTAGGCTTTGGAACACCCCATTTGGTACCAGCAAAGAC  349

seq1  CCTCCCACACACACACTTCCCACTGGCCAGGGTTCCTATGGGCCACTGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACACACACACTTCCCACTGGCCAGGGTTCCTATGGGCCACTGCA  399

seq1  TTTATCTATACCTTCAGACCATAAGCTCAGTAACTATACCAGCATCATAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTATACCTTCAGACCATAAGCTCAGTAACTATACCAGCATCATAC  449

seq1  CCCAATATCCTAGGGGTCTTCATGATGCTCTAGGAAGGCACCTCCCCTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATATCCTAGGGGTCTTCATGATGCTCTAGGAAGGCACCTCCCCTCC  499

seq1  TCCAGATATCAACCACTTAGCACAAATCCCGATGTCCCCCTTTCCTGTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATATCAACCACTTAGCACAAATCCCGATGTCCCCCTTTCCTGTCC  549

seq1  CTAGGTCTGACCTATGTTATACAAATCACCCCAGGGCAGGGCAGGCTGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTCTGACCTATGTTATACAAATCACCCCAGGGCAGGGCAGGCTGAT  599

seq1  GACCCTGGCCTCTGCTTAACCTCAGGAACTAAGCTGGTGAGTCCCACAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGGCCTCTGCTTAACCTCAGGAACTAAGCTGGTGAGTCCCACAAA  649

seq1  CATCCTTTGGGCTCTGAGGTGACCCTAAGGAGACATGGAGCACCAGTCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTGGGCTCTGAGGTGACCCTAAGGAGACATGGAGCACCAGTCAG  699

seq1  AGCTACTGGTGAGCTATGCAAGCTAAGAATTC  731
      ||||||||||||||||||||||||||||||||
seq2  AGCTACTGGTGAGCTATGCAAGCTAAGAATTC  731