BAC Information

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BAC

Clone NameB6Ng01-145C22
Chromosome17 (Build37)
Map Location 46,425,860 - 46,524,655
singlet/doubletdoublet
Overlap geneEgfl9, Abcc10, BC040756, Zfp318
Upstream geneEG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1
Downstream geneLOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145C22.bB6Ng01-145C22.g
ACCDH942659DH942660
length8391,211
definitionDH942659|Mus musculus domesticus DNA, BAC clone: B6Ng01-145C22, 5' end.DH942660|Mus musculus domesticus DNA, BAC clone: B6Ng01-145C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,523,824 - 46,524,655)(46,425,860 - 46,427,096)
sequence
gaattccaggacagccagggctacacagagaaatcctgtctcaaaaaaca
aaaacaaaacaaaaacaaagctaattttgtagttgaatgttggggtcatg
cttgtaatctcagcattcaggaagcagagcaggaagatttttgttgagtt
ccaggtcagccagccagggctacacacactgtcccataccttaaaaaagc
caagtagactaccacaagcctttaatcccagcactgggaagcagaggcag
aactctgtaagttcaaactcatccagggctatagtaaaattaaatcctcc
atcaataagaaaactttaaacattgtatacagtggggcctatgcctttaa
tcccagcacttgggaagcagaagcaagaggatctctgaggccagtctggt
ctaccgactgagtttcaagacagacaggatacacagagaaaccctctctt
taaaaaaaaaaagaagaggagaaggaggagggagaggaagaagaagagga
agaggaggagggaaaaaaaagagactttccattttgtccaaaaccttcat
tgtataaggggatctttttagattttaatccaatatttgatttatgttcc
cttagcttctctttctacttgtaccatgatgttcttttttctagcataca
ttatattcagaaacagaatctatatcacatactcttcccactcagaaaag
ccttttccagtgttctatcttccactggacacagatactgtttgacttca
gtggctggcaccaactttccagatacatcactcagaaaaacaacaatatt
tctgccttccagagcaaagtattggtgcacctgccatag
gaattccaggacagccagggctacacagagaaaccctgtctcgaaaaacc
caaaaaaaaaaaaaaaagaatgaatgagtgacaggttcttgctgtcttgt
atctgtagctcatttggtaactaatacacaagactttctgtgaaagggag
actaggaagagaggcaggaaactaaagaaccttcctctcatttgggagtt
aggcaggcctacaaggatgaagctatgtttctgaaggccgggaaagacag
atactcagaaaagatattggtcaggggctggggagacatcttgaccattc
tagagaactatagctattgtccaggcctgcgatgggaggcagaaatgagc
cagctttgacaggtgatcaccactatgaggaaagaccttacgatcccaaa
gtcatctggttgccagcaaaatccattcccaggtccgccaaagaacagcc
actgaattatgaatttgggtctcattcttgctcagagaccagctcatctc
cggatcgttcaacttttactacatgcactgctgaagtgaacacattaagt
catagaccgaacagcaaaattgaaatttcaaattctcgaaattgaagccg
agagtctgatggcatcagccagggtgctccagcaccagccgaacctgtca
ctttcttgagcataggtcagaggtaaagcaatgctaagcagagtgcctgg
ggtcagatgcaactgtaccccgaaaatccctcccaccccccacccctgcc
tagcctgaccatagccaaatgactgaagctctctctatgtccatttcccc
atctataaaagcagactaaaaatagcatctagctcagagttgtgggtcaa
atgaattcatgcaccgtctagtttttcccctgttgctgtgaaattactct
gacaaggcaacttaaaggagaaagggctcattctggttcccaatgacagg
tgaaagttcatcacagctggaaatcccaacagtggggagctgagtgagtg
gttacattgtatccacacctccaaagcagagagatgttacattcgtacag
tctcagctgagaatggatgccaaccactctcatgtggcttccagtactga
ataaacatattctttatccacggcgaaagctatgttctgcagaagtgttg
gagctcgtcctaggtgacttgatctagcagtaaccgtattgaatcatcgc
atacacacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_46523824_46524655
seq2: B6Ng01-145C22.b_47_885 (reverse)

seq1  CTATGGCAGGTGCACC-ATAC-TTGCTCTGGAAGGCAG-AATATTGTTG-  46
      |||||||||||||||| |||| |||||||||||||||| |||||||||| 
seq2  CTATGGCAGGTGCACCAATACTTTGCTCTGGAAGGCAGAAATATTGTTGT  50

seq1  TTTTCTGAGTGATGTATCT-GAAAGTTGGTGCCAG-CACTGAAGTCAAAC  94
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  TTTTCTGAGTGATGTATCTGGAAAGTTGGTGCCAGCCACTGAAGTCAAAC  100

seq1  AGTATCTGTGTCCAGTGGAAGATAGAACACTGGAAAAGGC-TTTCTGAGT  143
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGTATCTGTGTCCAGTGGAAGATAGAACACTGGAAAAGGCTTTTCTGAGT  150

seq1  GGGAAGAGTATGTTGATATAGATTCTGTTTCTGAATATAATGTATGCTAG  193
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGTATG-TGATATAGATTCTGTTTCTGAATATAATGTATGCTAG  199

seq1  -AAAAAGAACATCATGGTACAAGTAGAAAGAGAAGCTAAGGGAACATAAA  242
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAACATCATGGTACAAGTAGAAAGAGAAGCTAAGGGAACATAAA  249

seq1  TCAAATATTGGATTAAAATCTAAAAAGATCCCCTTATACAATGAAGGTTT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATTGGATTAAAATCTAAAAAGATCCCCTTATACAATGAAGGTTT  299

seq1  TGGACAAAATGGAAAGTCTCTTTTTTTTCCCTCCTCCTCTTCCTCTTCTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAAATGGAAAGTCTCTTTTTTTTCCCTCCTCCTCTTCCTCTTCTT  349

seq1  CTTCCTCTCCCTCCTCCTTCTCCTCTTCTTTTTTTTTTTAAAGAGAGGGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTCCCTCCTCCTTCTCCTCTTCTTTTTTTTTTTAAAGAGAGGGT  399

seq1  TTCTCTGTGTATCCTGTCTGTCTTGAAACTCAGTCGGTAGACCAGACTGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTATCCTGTCTGTCTTGAAACTCAGTCGGTAGACCAGACTGG  449

seq1  CCTCAGAGATCCTCTTGCTTCTGCTTCCCAAGTGCTGGGATTAAAGGCAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGATCCTCTTGCTTCTGCTTCCCAAGTGCTGGGATTAAAGGCAT  499

seq1  AGGCCCCACTGTATACAATGTTTAAAGTTTTCTTATTGATGGAGGATTTA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCACTGTATACAATGTTTAAAGTTTTCTTATTGATGGAGGATTTA  549

seq1  ATTTTACTATAGCCCTGGATGAGTTTGAACTTACAGAGTTCTGCCTCTGC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTATAGCCCTGGATGAGTTTGAACTTACAGAGTTCTGCCTCTGC  599

seq1  TTCCCAGTGCTGGGATTAAAGGCTTGTGGTAGTCTACTTGGCTTTTTTAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTGCTGGGATTAAAGGCTTGTGGTAGTCTACTTGGCTTTTTTAA  649

seq1  GGTATGGGACAGTGTGTGTAGCCCTGGCTGGCTGACCTGGAACTCAACAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGGACAGTGTGTGTAGCCCTGGCTGGCTGACCTGGAACTCAACAA  699

seq1  AAATCTTCCTGCTCTGCTTCCTGAATGCTGAGATTACAAGCATGACCCCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTCCTGCTCTGCTTCCTGAATGCTGAGATTACAAGCATGACCCCA  749

seq1  ACATTCAACTACAAAATTAGCTTTGTTTTTGTTTTGTTTTTGTTTTTTGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAACTACAAAATTAGCTTTGTTTTTGTTTTGTTTTTGTTTTTTGA  799

seq1  GACAGGATTTCTCTGTGTAGCCCTGGCTGTCCTGGAATTC  832
      ||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGATTTCTCTGTGTAGCCCTGGCTGTCCTGGAATTC  839

seq1: chr17_46425860_46427096
seq2: B6Ng01-145C22.g_69_1279

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACC  50

seq1  CAAAAAAAAAAAAAAAAGAATGAATGAGTGACAGGTTCTTGCTGTCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAAAAAAGAATGAATGAGTGACAGGTTCTTGCTGTCTTGT  100

seq1  ATCTGTAGCTCATTTGGTAACTAATACACAAGACTTTCTGTGAAAGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAGCTCATTTGGTAACTAATACACAAGACTTTCTGTGAAAGGGAG  150

seq1  ACTAGGAAGAGAGGCAGGAAACTAAAGAACCTTCCTCTCATTTGGGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAAGAGAGGCAGGAAACTAAAGAACCTTCCTCTCATTTGGGAGTT  200

seq1  AGGCAGGCCTACAAGGATGAAGCTATGTTTCTGAAGGCCGGGAAAGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCCTACAAGGATGAAGCTATGTTTCTGAAGGCCGGGAAAGACAG  250

seq1  ATACTCAGAAAAGATATTGGTCAGGGGCTGGGGAGACATCTTGACCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAGAAAAGATATTGGTCAGGGGCTGGGGAGACATCTTGACCATTC  300

seq1  TAGAGAACTATAGCTATTGTCCAGGCCTGCGATGGGAGGCAGAAATGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAACTATAGCTATTGTCCAGGCCTGCGATGGGAGGCAGAAATGAGC  350

seq1  CAGCTTTGACAGGTGATCACCACTATGAGGAAAGACCTTACGATCCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTGACAGGTGATCACCACTATGAGGAAAGACCTTACGATCCCAAA  400

seq1  GTCATCTGGTTGCCAGCAAAATCCATTCCCAGGTCCGCCAAAGAACAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTGGTTGCCAGCAAAATCCATTCCCAGGTCCGCCAAAGAACAGCC  450

seq1  ACTGAATTATGAATTTGGGTCTCATTCTTGCTCAGAGACCAGCTCATCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATTATGAATTTGGGTCTCATTCTTGCTCAGAGACCAGCTCATCTC  500

seq1  CGGATCGTTCAACTTTTACTACATGCACTGCTGAAGTGAACACATTAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATCGTTCAACTTTTACTACATGCACTGCTGAAGTGAACACATTAAGT  550

seq1  CATAGACCGAACAGCAAAATTGAAATTTCAAATTCTCGAAATTGAAGCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACCGAACAGCAAAATTGAAATTTCAAATTCTCGAAATTGAAGCCG  600

seq1  AGAGTCTGATGGCATCAGCCAGGGTGCTCCAGCACCAGCCGAACCTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTGATGGCATCAGCCAGGGTGCTCCAGCACCAGCCGAACCTGTCA  650

seq1  CTTTCTTGAGCATAGGTCAGAGGTAAAGCAATGCTAAGCAGAGTGCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGAGCATAGGTCAGAGGTAAAGCAATGCTAAGCAGAGTGCCTGG  700

seq1  GGTCAGATGCAACTGTACCCCGAAAATCCCTCCCACCCCCCACCCCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGATGCAACTGTACCCCGAAAATCCCTCCCACCCCCCACCCCTGCC  750

seq1  TAGCCTGACCATAGCCAAATGACTGAAGCTCTCTCTATGTCCATTTCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGACCATAGCCAAATGACTGAAGCTCTCTCTATGTCCATTTCCCC  800

seq1  ATCTATAAAAGCAGACTAAAAATAGCATCTAGCTCAGAGTTGTGGGTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAAAAGCAGACTAAAAATAGCATCTAGCTCAGAGTTGTGGGTCAA  850

seq1  ATGAATTCATGCACCGTCCTAGTTTTTCCCCTGTTGCTGTGAAATTACTC  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGAATTCATGCACCGT-CTAGTTTTTCCCCTGTTGCTGTGAAATTACTC  899

seq1  TGACAAAGGCAACTTAAAGGAGAAAGGGCTCATTCTGGTTCCCAATGACA  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAC-AAGGCAACTTAAAGGAGAAAGGGCTCATTCTGGTTCCCAATGACA  948

seq1  GGTGAAAGTTCATCACAGCTGGAAAATCCCAACAGT-GGGAGCTTGAGTG  999
      |||||||||||||||||||||| ||||||||||||| |||||| ||||||
seq2  GGTGAAAGTTCATCACAGCTGG-AAATCCCAACAGTGGGGAGC-TGAGTG  996

seq1  AGTTGGTTACATTGTATCCACA-CTCCAAAGCAGAGAGAATGGTTACATT  1048
      || ||||||||||||||||||| ||||||||||||||||   ||||||||
seq2  AG-TGGTTACATTGTATCCACACCTCCAAAGCAGAGAGA--TGTTACATT  1043

seq1  CGTACAGTCCCCAGCTGAGGAATGATGCCAACCACTCTCAATGTGGGCCT  1098
      |||||||| | |||||||| |  |||||||||||||||| ||||||  ||
seq2  CGTACAGT-CTCAGCTGAGAATGGATGCCAACCACTCTC-ATGTGG--CT  1089

seq1  TCCCAAGTAACCTAATTAACATATTCCTTTATCCACACGGCCAGAAGCTA  1148
      |||  ||| ||  ||| |||||||| |||||||  |||||| | ||||| 
seq2  TCC--AGT-ACTGAATAAACATATT-CTTTATC--CACGGCGA-AAGCT-  1131

seq1  ATGTCCTGCAGGATGTGTGGAGGCTCGTCCCTAGGTGACTGTAGAATCTA  1198
      |||| ||||| || |||| |  |||||| |||||||||||     |||||
seq2  ATGTTCTGCA-GAAGTGTTGGAGCTCGT-CCTAGGTGACT---TGATCTA  1176

seq1  GCAAGTAACACTTAATCCCAATCATCGCATACACACAAA  1237
      || |||||| | || |   ||||||||||||||||||||
seq2  GC-AGTAAC-CGTATT--GAATCATCGCATACACACAAA  1211