BAC Information

Click to search

BAC

Clone NameB6Ng01-145H20
Chromosome17 (Build37)
Map Location 19,229,022 - 19,317,527
singlet/doubletdoublet
Overlap geneLOC665344
Upstream geneEG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367, EG224552
Downstream geneLOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145H20.bB6Ng01-145H20.g
ACCDH942879DH942880
length9171,020
definitionDH942879|Mus musculus domesticus DNA, BAC clone: B6Ng01-145H20, 5' end.DH942880|Mus musculus domesticus DNA, BAC clone: B6Ng01-145H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,316,946 - 19,317,527)(19,229,022 - 19,230,140)
sequence
gaattctatccttttcctagtcaagggaaggacagtgaaaattaaacaat
tgaaggaacaatttacagaagagtcagaaccttagtcatgtaatatgtat
ttctggctgttatgattcaagactatgagaaagcaaactattccctatac
attttatgaacaaagtgtaaggtagaaaatttaagtttgccctcctagac
caagttggagccaagatgagtagagagacagataagataagagataagat
aagataagatagacagagatgagtagagagagggtaagagacacgtaata
tgatctattagatacttagagatagagagccagcccacatatagatatgg
agagatgataaattatatatatataagcatacacaaatgcatacagacat
gaggacatacaaatatgcatacattcacatatgcatatttatatacagag
aaagcagagagacctataaacagagtaagaaaaccagacaatgaagataa
taagaccctttttaagtttattattgttattattttcctctcaacaatcc
ttccccctatactccctaccattcttctctgctggtgggggatctactgg
gtatgcacccaccctggcatataaactctctgtgaggctggctacacact
ctgccgctgagactatacaaggtattccagcttttagaacccattccact
gacaggcaattaccctccacaaagctcaaattcagctggatcaatgtcat
caacaacattaacaacccaaagatacactaagtatcatggaggagaaaga
gagaaaaaataattaacaccttaataaaggggacaacttcctgaacaatt
catcaatggctcagcctctaagaaaaaaatgataagtacgataccatgaa
attgcaaagcttctgta
gaattctttgtttttattacaaatgccttttaatttattgaagaactaat
tggaaaacatacttgaaacaatggtatctttttatagggttattctttct
tttttggcattatattttattggttaaattatataacatttcggtcctta
ttatagcttccccttcctcctctcttatcagtccccacatcttatctcct
ttgctctattgaccatacctgcccccctcctctgatatagggaggaattc
cattcattttaatgagaatcagcatataaaattgcgatatgattaactac
atcttagatagaaacaactctacattcagaggaaacctatccaaaggaag
gtggtgtatattaattttcttttcaatggttttaatttctgtcacattct
tagatgatttagctgaaacatggttcacaaatctcaaattccacagtctc
ttttcacattgactttctttgttcatacaataatgggaataagtttgctt
ttgctgtagtcttgaattataacagtcagaagtaaatatgacctgacaaa
gattctgactcttctgtaaattgttacttcaattgtttaatgttcactga
ccttcagtttattaggaaaagaatagaatgcaatggaacctatggtgaga
acctgactgtgaaagactagaaaattgaggtccattcaaagaaactatat
aagcatgtaggacataactgaagggtataaatttgtttactgatctctat
gtttatgacatgtgtatatgcacacactgtttgtattaaggacacttaca
taagattattttgtgacttaggtggaaaatttttgccaccacatcaatca
tttttccttaagtattatgtaatgtctgtcactaaaaatatatataagta
gtgtatcttctagaatttcctcctggtcttttttttaattaggtattttg
taaattacattccaatgctaccagaaagcccctaagcctttcctcccttc
cctccgcactccatcttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_19316946_19317527
seq2: B6Ng01-145H20.b_44_625 (reverse)

seq1  GCAGAGAAGAATGGTAGGGAGTATAGGGGGAAGGATTGTTGAGAGGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAAGAATGGTAGGGAGTATAGGGGGAAGGATTGTTGAGAGGAAAA  50

seq1  TAATAACAATAATAAACTTAAAAAGGGTCTTATTATCTTCATTGTCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACAATAATAAACTTAAAAAGGGTCTTATTATCTTCATTGTCTGGT  100

seq1  TTTCTTACTCTGTTTATAGGTCTCTCTGCTTTCTCTGTATATAAATATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTACTCTGTTTATAGGTCTCTCTGCTTTCTCTGTATATAAATATGC  150

seq1  ATATGTGAATGTATGCATATTTGTATGTCCTCATGTCTGTATGCATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGAATGTATGCATATTTGTATGTCCTCATGTCTGTATGCATTTGT  200

seq1  GTATGCTTATATATATATAATTTATCATCTCTCCATATCTATATGTGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTTATATATATATAATTTATCATCTCTCCATATCTATATGTGGGC  250

seq1  TGGCTCTCTATCTCTAAGTATCTAATAGATCATATTACGTGTCTCTTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTCTATCTCTAAGTATCTAATAGATCATATTACGTGTCTCTTACC  300

seq1  CTCTCTCTACTCATCTCTGTCTATCTTATCTTATCTTATCTCTTATCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTACTCATCTCTGTCTATCTTATCTTATCTTATCTCTTATCTTA  350

seq1  TCTGTCTCTCTACTCATCTTGGCTCCAACTTGGTCTAGGAGGGCAAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTCTACTCATCTTGGCTCCAACTTGGTCTAGGAGGGCAAACTT  400

seq1  AAATTTTCTACCTTACACTTTGTTCATAAAATGTATAGGGAATAGTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTACCTTACACTTTGTTCATAAAATGTATAGGGAATAGTTTGC  450

seq1  TTTCTCATAGTCTTGAATCATAACAGCCAGAAATACATATTACATGACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATAGTCTTGAATCATAACAGCCAGAAATACATATTACATGACTA  500

seq1  AGGTTCTGACTCTTCTGTAAATTGTTCCTTCAATTGTTTAATTTTCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTGACTCTTCTGTAAATTGTTCCTTCAATTGTTTAATTTTCACTG  550

seq1  TCCTTCCCTTGACTAGGAAAAGGATAGAATTC  582
      ||||||||||||||||||||||||||||||||
seq2  TCCTTCCCTTGACTAGGAAAAGGATAGAATTC  582

seq1: chr17_19229022_19230140
seq2: B6Ng01-145H20.g_68_1087

seq1  GAATTCTTTGTTTTTATTACAAATGCCTTTTAATTTATTGAAGAACTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTTTATTACAAATGCCTTTTAATTTATTGAAGAACTAAT  50

seq1  TGGAAAACATACTTGAAACAATGGTATCTTTTTATAGGGTTATTCTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACATACTTGAAACAATGGTATCTTTTTATAGGGTTATTCTTTCT  100

seq1  TTTTTGGCATTATATTTTATTGGTTAAATTATATAACATTTCGGTCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGCATTATATTTTATTGGTTAAATTATATAACATTTCGGTCCTTA  150

seq1  TTATAGCTTCCCCTTCCTCCTCTCTTATCAGTCCCCACATCTTATCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCTTCCCCTTCCTCCTCTCTTATCAGTCCCCACATCTTATCTCCT  200

seq1  TTGCTCTATTGACCATACCTGCCCCCCTCCTCTGATATAGGGAGGAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTATTGACCATACCTGCCCCCCTCCTCTGATATAGGGAGGAATTC  250

seq1  CATTCATTTTAATGAGAATCAGCATATAAAATTGCGATATGATTAACTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTTTAATGAGAATCAGCATATAAAATTGCGATATGATTAACTAC  300

seq1  ATCTTAGATAGAAACAACTCTACATTCAGAGGAAACCTATCCAAAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGATAGAAACAACTCTACATTCAGAGGAAACCTATCCAAAGGAAG  350

seq1  GTGGTGTATATTAATTTTCTTTTCAATGGTTTTAATTTCTGTCACATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTATATTAATTTTCTTTTCAATGGTTTTAATTTCTGTCACATTCT  400

seq1  TAGATGATTTAGCTGAAACATGGTTCACAAATCTCAAATTCCACAGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGATTTAGCTGAAACATGGTTCACAAATCTCAAATTCCACAGTCTC  450

seq1  TTTTCACATTGACTTTCTTTGTTCATACAATAATGGGAATAAGTTTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACATTGACTTTCTTTGTTCATACAATAATGGGAATAAGTTTGCTT  500

seq1  TTGCTGTAGTCTTGAATTATAACAGTCAGAAGTAAATATGACCTGACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTAGTCTTGAATTATAACAGTCAGAAGTAAATATGACCTGACAAA  550

seq1  GATTCTGACTCTTCTGTAAATTGTTACTTCAATTGTTTAATGTTCACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGACTCTTCTGTAAATTGTTACTTCAATTGTTTAATGTTCACTGA  600

seq1  CCTTCAGTTTATTAGGAAAAGAATAGAATGCAATGGAACCTATGGTGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGTTTATTAGGAAAAGAATAGAATGCAATGGAACCTATGGTGAGA  650

seq1  ACCTGACTGTGAAAGACTAGAAAATTGAGGTCCATTCAAAGAAACTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACTGTGAAAGACTAGAAAATTGAGGTCCATTCAAAGAAACTATAT  700

seq1  AAGCATGTAGGACATAACTGAAGGGTATAAATTTGTTTACTGATCTCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGTAGGACATAACTGAAGGGTATAAATTTGTTTACTGATCTCTAT  750

seq1  GTTTATGACATGTGTATATGCACACACTG-TTGTATTAAGGACACTTACA  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTTTATGACATGTGTATATGCACACACTGTTTGTATTAAGGACACTTACA  800

seq1  TAAGAATATTTTGTGACTTAGGTGGAAAATTTTTGCCACCACATCAATCA  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTATTTTGTGACTTAGGTGGAAAATTTTTGCCACCACATCAATCA  850

seq1  TTTTTCCTAAGGTATTATGTAATGTCTGTCCACTAAAAATATATATAAGT  899
      |||||||| | |||||||||||||||||| ||||||||||||||||||||
seq2  TTTTTCCTTAAGTATTATGTAATGTCTGT-CACTAAAAATATATATAAGT  899

seq1  AGTGTATCTTCTAG-ATTTCCTTCTTGTCTTTTTTTTTAATTAGGTATTT  948
      |||||||||||||| ||||||| || ||| ||||||||||||||||||||
seq2  AGTGTATCTTCTAGAATTTCCTCCTGGTC-TTTTTTTTAATTAGGTATTT  948

seq1  TGTTAATTTACATTTCCAATGCTACCCAGAAAGTCCCCTAAGCCTTCCCT  998
      || ||| ||||| ||||||||||| |||||||| |||||||||||| |||
seq2  TG-TAAATTACA-TTCCAATGCTA-CCAGAAAG-CCCCTAAGCCTTTCCT  994

seq1  CCCACTCCCCTCCCCGCCACTCCTACTTCT-TGGCCTTGGCATTCCCCTC  1047
      ||  || ||||||    ||||||  |||||                    
seq2  CC--CTTCCCTCC---GCACTCCATCTTCTG-------------------  1020

seq1  TATTGAGACATATTAAGTTTGCAAGACCAATGGGCCTCTCTTTCCACTGA  1097
                                                        
seq2  --------------------------------------------------  1020

seq1  TGACCGACTAGGCCATCTTCTG  1119
                            
seq2  ----------------------  1020