BAC Information

Click to search

BAC

Clone NameB6Ng01-146E24
Chromosome17 (Build37)
Map Location 31,837,148 - 32,006,837
singlet/doubletdoublet
Overlap geneSnf1lk
Upstream geneDnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa
Downstream geneHsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146E24.bB6Ng01-146E24.g
ACCDH943488DH943489
length944969
definitionDH943488|Mus musculus domesticus DNA, BAC clone: B6Ng01-146E24, 5' end.DH943489|Mus musculus domesticus DNA, BAC clone: B6Ng01-146E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,837,148 - 31,838,085)(32,005,881 - 32,006,837)
sequence
gaattcaataatctcatcccccccccccgggatgaaattagaaataaaaa
taattcatacggaaatcattacagctgggctgagcagatggctctgttgg
taaactccaagaccgagttcagattccagtacccatgtagaacgccagct
tggtggcacacatctgcaggcctggcatgtagggctgtggcagagaaaca
cagagtcctgaagcaaattgattgactgatcagccagccccgtcaaatga
ttgagctccaggttcagtgagagaccctctctcaaacattaagtggggag
gaattgaggatggctcgtgccatcatgatgtgcacccacacgcatgcaag
catgttatacgcacagcacctccgcagtagaaaggactctgctgaagaac
aaccatcattagttagttgttcagtaagaagatacacacactatacttta
tgaattgaaagggaaatgtcagggttggagagatggctcagtggttaaga
gcattgactgttcttccagaggtcctgagttcaaatcctagcaaccatat
gatggctcacaaccatccgtaatgggatctgatccctcttctgctgtgtc
tgaagacagcagccatgtacttcatagacataaaataaataaaatctttt
taaaaaaagaaagggaaaagttgaaatgggtatggcggcccctgccttta
atcccagccctcggcaggcagaggcaaatcctcatcttttgagttagagg
ctagcctggtctacatagtggagtcccaggacagtccagggctacacaca
gagaccctgtctcaacaaaaacaagaaacaaaaccaaatcatatactcct
acaaacaacgaataaagtgaaatatcaccaacaggtctgtgttagaacat
taattccctgccaagtgatcatctgtttgggaaaccagtgaaac
gaattctctttctaaaaataaaaagacagatctaagactgctcacagggc
agaggggtactgagcctgtaaagactcttgctgccaagcccgacgacctg
agtttgagccccaggacctgaagagtgggaggagagaaccaactctccca
caggttgacctctgacctccacatgttgctgtgacacacaagccccctgc
tccccacatgcatgcacacacactcacacaaatgaatagatggataaatc
aagatataataaaaaaacttaaattcttcacataaggcacaatctaaact
tctttttgaaagatctaaaatatttatataatagaatttatatattatat
gattgtagtatatataaaaatatgtaaatgtatgtatgcaatatggatat
aatgcacatacatgtcaacatcgtatatgtaaatacatacatatacatgt
tatatatgtatataatgtatatattaaatatataatacatataaataatg
cacatgtatacatataatatatactatacatacaatatttactatacaca
tgatatatacattatatataatgtgtgtaatatataaaaatgtatgtaag
agtatataattatataaaatgtatttatataataggaaacgtgcatcatg
ttttaccatgctcggttatcatcaaaacaataaaattttggattgccttt
tactgcttattatttcatatatatatatatttttcataactatatattca
atttttttcttttggagatggagtttcactttcttcattaggccagctct
gcactttggggggcccaagcaaagccctcctgcatcagggtagtggaaga
ctgcaagtgcccgtatcaccactttttggttcttccgtacttggaaacaa
acactgatctttaaactaacctggaagatacgagtcatgataactcttgc
tacctcaccctggcaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_31837148_31838085
seq2: B6Ng01-146E24.b_46_989

seq1  GAATTCAATAATCTCATCCCCCCCCCCCGGGATGAAATTAGAAATAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAATCTCATCCCCCCCCCCCGGGATGAAATTAGAAATAAAAA  50

seq1  TAATTCATACGGAAATCATTACAGCTGGGCTGAGCAGATGGCTCTGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATACGGAAATCATTACAGCTGGGCTGAGCAGATGGCTCTGTTGG  100

seq1  TAAACTCCAAGACCGAGTTCAGATTCCAGTACCCATGTAGAACGCCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCCAAGACCGAGTTCAGATTCCAGTACCCATGTAGAACGCCAGCT  150

seq1  TGGTGGCACACATCTGCAGGCCTGGCATGTAGGGCTGTGGCAGAGAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCACACATCTGCAGGCCTGGCATGTAGGGCTGTGGCAGAGAAACA  200

seq1  CAGAGTCCTGAAGCAAATTGATTGACTGATCAGCCAGCCCCGTCAAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCCTGAAGCAAATTGATTGACTGATCAGCCAGCCCCGTCAAATGA  250

seq1  TTGAGCTCCAGGTTCAGTGAGAGACCCTCTCTCAAACATTAAGTGGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTCCAGGTTCAGTGAGAGACCCTCTCTCAAACATTAAGTGGGGAG  300

seq1  GAATTGAGGATGGCTCGTGCCATCATGATGTGCACCCACACGCATGCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAGGATGGCTCGTGCCATCATGATGTGCACCCACACGCATGCAAG  350

seq1  CATGTTATACGCACAGCACCTCCGCAGTAGAAAGGACTCTGCTGAAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTATACGCACAGCACCTCCGCAGTAGAAAGGACTCTGCTGAAGAAC  400

seq1  AACCATCATTAGTTAGTTGTTCAGTAAGAAGATACACACACTATACTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCATTAGTTAGTTGTTCAGTAAGAAGATACACACACTATACTTTA  450

seq1  TGAATTGAAAGGGAAATGTCAGGGTTGGAGAGATGGCTCAGTGGTTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGAAAGGGAAATGTCAGGGTTGGAGAGATGGCTCAGTGGTTAAGA  500

seq1  GCATTGACTGTTCTTCCAGAGGTCCTGAGTTCAAATCCTAGCAACCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGACTGTTCTTCCAGAGGTCCTGAGTTCAAATCCTAGCAACCATAT  550

seq1  GATGGCTCACAACCATCCGTAATGGGATCTGATCCCTCTTCTGCTGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCACAACCATCCGTAATGGGATCTGATCCCTCTTCTGCTGTGTC  600

seq1  TGAAGACAGCAGCCATGTAC-TCATAGACATAAAATAAAT-AAATC-TTT  647
      |||||||||||||||||||| ||||||||||||||||||| ||||| |||
seq2  TGAAGACAGCAGCCATGTACTTCATAGACATAAAATAAATAAAATCTTTT  650

seq1  TAAAAAAAGAAAGGGAAAAGTTGAAATGGGCATGGCGGCCCCTGCCTTTA  697
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAAAAAAAGAAAGGGAAAAGTTGAAATGGGTATGGCGGCCCCTGCCTTTA  700

seq1  ATCCCAGCCCTCGGCAGGCAGAGGCAAATCCTCATC-TTTGAGTTAGAGG  746
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCCCAGCCCTCGGCAGGCAGAGGCAAATCCTCATCTTTTGAGTTAGAGG  750

seq1  CTAGCCTGGTCTACATAGT-GAGTTCCAGGACAG-CCAGGGCTACACACA  794
      ||||||||||||||||||| |||| ||||||||| |||||||||||||||
seq2  CTAGCCTGGTCTACATAGTGGAGTCCCAGGACAGTCCAGGGCTACACACA  800

seq1  GAGACCCTGTCTCAACAAAAACAAGAAACAAAAACAAAAACAAAAAACCC  844
      ||||||||||||||||||||||||||||||||| |  |||  | | || |
seq2  GAGACCCTGTCTCAACAAAAACAAGAAACAAAACC--AAATCATATACTC  848

seq1  CCACAAACAACGAATAAAGTGAAATATCACCAACAGGTCTGTGTTTGGAC  894
      | ||||||||||||||||||||||||||||||||||||||||||| | ||
seq2  CTACAAACAACGAATAAAGTGAAATATCACCAACAGGTCTGTGTTAGAAC  898

seq1  ATGTACTCCCTGCCAAGTGA-CA-CTGTTTTGGGAGACAGTGACAC  938
      ||  | |||||||||||||| || |||||| || |  |||||| ||
seq2  ATTAATTCCCTGCCAAGTGATCATCTGTTTGGGAAACCAGTGAAAC  944

seq1: chr17_32005881_32006837
seq2: B6Ng01-146E24.g_65_1033 (reverse)

seq1  AGCTTGCCAGGGTTGAGGTAGGCAAG-GTTATCATGACTTCGTATCTTCC  49
      |||||||||||| ||||||| ||||| ||||||||||| |||||||||||
seq2  AGCTTGCCAGGG-TGAGGTA-GCAAGAGTTATCATGAC-TCGTATCTTCC  47

seq1  ATGTTAGTTTTAAAGATCAGTGTTTGTTTCCAAGTACGG-AGAACC-AAA  97
      | ||||| ||||||||||||||||||||||||||||||| |||||| |||
seq2  AGGTTAG-TTTAAAGATCAGTGTTTGTTTCCAAGTACGGAAGAACCAAAA  96

seq1  AGTGGTGATAC-GGCACTTGCAGTC-TCCACTACCCTGATGCAGG-GGGC  144
      ||||||||||| ||||||||||||| ||||||||||||||||||| ||||
seq2  AGTGGTGATACGGGCACTTGCAGTCTTCCACTACCCTGATGCAGGAGGGC  146

seq1  -TTGCTTGGGCCCCC--AAGTGCAGAGCTGGCCTAATGAAGAAAGTGAAA  191
       ||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  TTTGCTTGGGCCCCCCAAAGTGCAGAGCTGGCCTAATGAAGAAAGTGAAA  196

seq1  CTCCATCTCCAAA--GAAAAAATTGAATATATAGTTATGAAAAATATATA  239
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  CTCCATCTCCAAAAGAAAAAAATTGAATATATAGTTATGAAAAATATATA  246

seq1  TATATATGAAATAATAAGCAGT-AAAGGCAATCCAAA--TTTATTGTTTT  286
      |||||||||||||||||||||| ||||||||||||||  |||||||||||
seq2  TATATATGAAATAATAAGCAGTAAAAGGCAATCCAAAATTTTATTGTTTT  296

seq1  GATGATAACCGAGCATGGT-AAACATGATGCACGTTT-CTATTATATAAA  334
      ||||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  GATGATAACCGAGCATGGTAAAACATGATGCACGTTTCCTATTATATAAA  346

seq1  TACATTTTATATAATTATATACTCTTACATACATTTTTATATATTACACA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTATATAATTATATACTCTTACATACATTTTTATATATTACACA  396

seq1  CATTATATATAATGTATATATCATGTGTATAGTAAATATTGTATGTATAG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATATATAATGTATATATCATGTGTATAGTAAATATTGTATGTATAG  446

seq1  TATATATTATATGTATACATGTGCATTATTTATATGTATTATATATTTAA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTATATGTATACATGTGCATTATTTATATGTATTATATATTTAA  496

seq1  TATATACATTATATACATATATAACATGTATATGTATGTATTTACATATA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACATTATATACATATATAACATGTATATGTATGTATTTACATATA  546

seq1  CGATGTTGACATGTATGTGCATTATATCCATATTGCATACATACATTTAC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTTGACATGTATGTGCATTATATCCATATTGCATACATACATTTAC  596

seq1  ATATTTTTATATATACTACAATCATATAATATATAAATTCTATTATATAA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTATATATACTACAATCATATAATATATAAATTCTATTATATAA  646

seq1  ATATTTTAGATCTTTCAAAAAGAAGTTTAGATTGTGCCTTATGTGAAGAA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAGATCTTTCAAAAAGAAGTTTAGATTGTGCCTTATGTGAAGAA  696

seq1  TTTAAGTTTTTTTATTATATCTTGATTTATCCATCTATTCATTTGTGTGA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTTTTTTATTATATCTTGATTTATCCATCTATTCATTTGTGTGA  746

seq1  GTGTGTGTGCATGCATGTGGGGAGCAGGGGGCTTGTGTGTCACAGCAACA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGCATGCATGTGGGGAGCAGGGGGCTTGTGTGTCACAGCAACA  796

seq1  TGTGGAGGTCAGAGGTCAACCTGTGGGAGAGTTGGTTCTCTCCTCCCACT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGGTCAGAGGTCAACCTGTGGGAGAGTTGGTTCTCTCCTCCCACT  846

seq1  CTTCAGGTCCTGGGGCTCAAACTCAGGTCGTCGGGCTTGGCAGCAAGAGT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGTCCTGGGGCTCAAACTCAGGTCGTCGGGCTTGGCAGCAAGAGT  896

seq1  CTTTACAGGCTCAGTACCCCTCTGCCCTGTGAGCAGTCTTAGATCTGTCT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGGCTCAGTACCCCTCTGCCCTGTGAGCAGTCTTAGATCTGTCT  946

seq1  TTTTATTTTTAGAAAGAGAATTC  957
      |||||||||||||||||||||||
seq2  TTTTATTTTTAGAAAGAGAATTC  969