BAC Information

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BAC

Clone NameB6Ng01-146O22
Chromosome17 (Build37)7 (Build37)
Map Location 7,511,546 - 7,512,04765,569,076 - 65,570,076
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040500, LOC100040531, LOC100040525, LOC100040563, LOC100040546, LOC100040536, LOC100040556, LOC100040603, LOC100040596, LOC100040631, LOC100040616, Sytl3, Vil2, LOC100040654, Rshl2b, 1700122H20Rik, Tagap1, Rnaset2b, Gm1604, Rps6ka2
Downstream geneLOC625031, Tcp10b, LOC100038857, LOC667055, 5830477G23Rik, LOC625102, Fndc1, EG634588, LOC100040748, LOC100040760, LOC667102, Tagap, Rshl2a, LOC100040822, Rnaset2a, Fgfr1op, Ccr6, LOC667114, Brp44l, Sft2d1, LOC100038858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146O22.bB6Ng01-146O22.g
ACCDH943947DH943948
length8191,017
definitionDH943947|Mus musculus domesticus DNA, BAC clone: B6Ng01-146O22, 5' end.DH943948|Mus musculus domesticus DNA, BAC clone: B6Ng01-146O22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(7,511,546 - 7,512,047)(65,569,076 - 65,570,076)
sequence
gaattcaaaagtaaacaggaaaatttgcatttgtatgtgtcagaaattag
ttgatagtcttcattatattatgtccttatctggtttgggtatcagagca
atattgtctttgtaaaataatttagtaagataatttaattgcataccttg
cttttctattttatatagtagtatggggaggattattactactctctaaa
aatctggtggaatttagaagtgaatccatcttgtcctaagctgttttgat
gggaaactattttattattgattcaactttgtttcttacagaattatttc
aattgcttttcccactttatttaatttctgtagatcatactcatctgcaa
atttatttcttttgaattttctaacataaaacattttatatctgtaaaat
attttctaatactttttaaattatcagtggtatctgttttaatgtcttgc
ttttcatctctaattttataaaaattgttctttctccaggtccatccatt
tgcctaggaatttcataaattcattctttttaatagctgagtaatactcc
attgtgtaaatgtaccacattttctgtatctattcctctgttgagggata
tctgggttctttccagcttctggctattataaataagactgctatgaaca
tagtggagcatgtgtccttattatcagttggaacatcttctgggcatatg
cccaggagaggtattgtgggatcctctggtagtactatgatgctcacagt
cagctattggatggaacacagggcccccaatggaggaaaccaaggagcta
acgggggggtgggggtggg
gaattcctctgtggaatgaaatttacaaaaatttgacaaagagcatgggt
gggcaggacctagcccgcagccacctgtacatatgtagcagatgtgcaac
gtgctctttatgcatgtctcccagttactggagtggggtctacccctgat
tctgttgcctacctctgaatcctgttacacaatctgagatgcccagtctg
acctcagtgggagaagatatgcctagtcctgcagtgacttgaggtgccaa
gatgggttagtatccagagggatcatccccattctcagaggagaagagga
gagtggttgggaagaagctatgtgaggggtgactgggaggaaagagggtc
ttcaatcaggatgtaaagtgattgactgactgaataaattaaataaataa
ataaataaataaatgaaaagaattgtaagttgataaatatatcttggcta
tagtacatagtggggtatcacctcaccccatttggagtggctagcttaag
agatgaaaaacaggggctggagagatgactcaggggttaagagcactgac
tgcttttccagaggtcctgagttcaatccccagcaaccacatggtggctc
acaaccatctgcaatgggatctgacgccctctgctagtgtgtctgaagac
agctgcagtgtactcacatacatgagataaataaataaacaaacaaacaa
acaaacaaatctgtttttaagaaaatagatgaaaaaacaataaattgatg
atcaattacagaaaagaagagaacactcataccttgcttgttggaatata
taaactaattgtactcctttgtgcatagtacaaaagtccctcaaaacagt
aaactggtccctgccatttggatctggtaggcctacacctctatatccta
gacgtgtatccacaggattaagaatgtgaaagagaaccccttcattccct
ttcttcaatgcctcactatacattgcccaagatattgaatcaatctggaa
atctaccacattggttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_7511546_7512047
seq2: B6Ng01-146O22.b_788_868 (reverse)

seq1  CCCACCCCCACCCCCCACCCAGATTCTCTGATCCTTTTAGCCCTTCAGTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGGCTCTGCAGCACCTCCCTGCCTCACCGCAGACAGTTGTATCACTGAAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GAGGTGAATTGCCTTCTGCCAGCTCCTTTGAAAGATGTCCTTTGTATTTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATA  200
                                                        
seq2  --------------------------------------------------  0

seq1  CCAAAAGTCCCCCATACCCACCCACCCCCTCTCCCCTACCCACCCACTCC  250
                                                        
seq2  --------------------------------------------------  0

seq1  CCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGATATAAAGTTTGCGTGT  300
                                                        
seq2  --------------------------------------------------  0

seq1  CCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATAC  350
                                                        
seq2  --------------------------------------------------  0

seq1  ATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTT  400
                                                        
seq2  --------------------------------------------------  0

seq1  GTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCT  450
         |||||   |           ||| |||||||||||| |         
seq2  --CCCACCCCCA-------CCCCCCCGTTAGCTCCTTGGTT---------  32

seq1  AGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCA  500
         |||||||||||| |||||||| |||||||| ||||||||||||||||
seq2  ---TCCTCCATTGGGGGCCCTGTGTTCCATCCAATAGCTGACTGTGAGCA  79

seq1  TC  502
      ||
seq2  TC  81

seq1: chr7_65569076_65570076
seq2: B6Ng01-146O22.g_69_1079

seq1  GAATTCCTCTGTGGAATGAAATTTACAAAAATTTGACAAAGAGCATGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGTGGAATGAAATTTACAAAAATTTGACAAAGAGCATGGGT  50

seq1  GGGCAGGACCTAGCCCGCAGCCACCTGTACATATGTAGCAGATGTGCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGACCTAGCCCGCAGCCACCTGTACATATGTAGCAGATGTGCAAC  100

seq1  GTGCTCTTTATGCATGTCTCCCAGTTACTGGAGTGGGGTCTACCCCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTTATGCATGTCTCCCAGTTACTGGAGTGGGGTCTACCCCTGAT  150

seq1  TCTGTTGCCTACCTCTGAATCCTGTTACACAATCTGAGATGCCCAGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGCCTACCTCTGAATCCTGTTACACAATCTGAGATGCCCAGTCTG  200

seq1  ACCTCAGTGGGAGAAGATATGCCTAGTCCTGCAGTGACTTGAGGTGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGTGGGAGAAGATATGCCTAGTCCTGCAGTGACTTGAGGTGCCAA  250

seq1  GATGGGTTAGTATCCAGAGGGATCATCCCCATTCTCAGAGGAGAAGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTTAGTATCCAGAGGGATCATCCCCATTCTCAGAGGAGAAGAGGA  300

seq1  GAGTGGTTGGGAAGAAGCTATGTGAGGGGTGACTGGGAGGAAAGAGGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTTGGGAAGAAGCTATGTGAGGGGTGACTGGGAGGAAAGAGGGTC  350

seq1  TTCAATCAGGATGTAAAGTGATTGACTGACTGAATAAATTAAATAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCAGGATGTAAAGTGATTGACTGACTGAATAAATTAAATAAATAA  400

seq1  ATAAATAAATAAATGAAAAGAATTGTAAGTTGATAAATATATCTTGGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATAAATGAAAAGAATTGTAAGTTGATAAATATATCTTGGCTA  450

seq1  TAGTACATAGTGGGGTATCACCTCACCCCATTTGGAGTGGCTAGCTTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACATAGTGGGGTATCACCTCACCCCATTTGGAGTGGCTAGCTTAAG  500

seq1  AGATGAAAAACAGGGGCTGGAGAGATGACTCAGGGGTTAAGAGCACTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAAACAGGGGCTGGAGAGATGACTCAGGGGTTAAGAGCACTGAC  550

seq1  TGCTTTTCCAGAGGTCCTGAGTTCAATCCCCAGCAACCACATGGTGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCCAGAGGTCCTGAGTTCAATCCCCAGCAACCACATGGTGGCTC  600

seq1  ACAACCATCTGCAATGGGATCTGACGCCCTCTGCTAGTGTGTCTGAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATCTGCAATGGGATCTGACGCCCTCTGCTAGTGTGTCTGAAGAC  650

seq1  AGCTGCAGTGTACTCACATACATGAGATAAATAAATAAACAAACAAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGTGTACTCACATACATGAGATAAATAAATAAACAAACAAACAA  700

seq1  ACAAACAAATCTGTATTTAAGAAAATAGATG-AAAAACAATAAA-TGATG  748
      |||||||||||||| |||||||||||||||| |||||||||||| |||||
seq2  ACAAACAAATCTGTTTTTAAGAAAATAGATGAAAAAACAATAAATTGATG  750

seq1  ATCAA-TACAG-AAAGAAGAGAACACTCATACCTTGC-TGTTGG-ATATA  794
      ||||| ||||| ||||||||||||||||||||||||| |||||| |||||
seq2  ATCAATTACAGAAAAGAAGAGAACACTCATACCTTGCTTGTTGGAATATA  800

seq1  TAAACT-ATTGTACT-CATTGTGCAATAGTACAAAAGTCCCTCAAAACAG  842
      |||||| |||||||| | |||||| |||||||||||||||||||||||||
seq2  TAAACTAATTGTACTCCTTTGTGC-ATAGTACAAAAGTCCCTCAAAACAG  849

seq1  TAAAACTGGT-CCTGCCATTT-GATCTGGTAGGCCTACACCCTCTATATC  890
      | |||||||| |||||||||| ||||||||||||||||| ||||||||||
seq2  T-AAACTGGTCCCTGCCATTTGGATCTGGTAGGCCTACA-CCTCTATATC  897

seq1  CTAGACGTGTATCCACAGGAATAAGAATGTGGAAAGAG-ACACCCTCATT  939
      |||||||||||||||||||| ||||||||| ||||||| || || |||||
seq2  CTAGACGTGTATCCACAGGATTAAGAATGT-GAAAGAGAACCCCTTCATT  946

seq1  CCCGTTC-TCAATGCCTCACTATACCATAGCCAAGATATTGAATCAAACT  988
      ||| ||| |||||||||||||||||  |  ||||||||||||||||| ||
seq2  CCCTTTCTTCAATGCCTCACTATACATTGCCCAAGATATTGAATCAATCT  996

seq1  GG-AATCTA-CACAT  1001
      || |||||| |||||
seq2  GGAAATCTACCACAT  1011