BAC Information

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BAC

Clone NameB6Ng01-148B02
Chromosome17 (Build37)
Map Location 89,943,522 - 90,039,125
singlet/doubletdoublet
Overlap genenone
Upstream geneCcdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr, LOC100043904
Downstream geneLOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148B02.bB6Ng01-148B02.g
ACCDH944774DH944775
length1,0541,120
definitionDH944774|Mus musculus domesticus DNA, BAC clone: B6Ng01-148B02, 5' end.DH944775|Mus musculus domesticus DNA, BAC clone: B6Ng01-148B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,943,522 - 89,944,575)(90,037,992 - 90,039,125)
sequence
gaattctatcgtttttaaaaatctaaaggcagttctgtgttctcaaaata
aaaccaacatagaggtaatgcattgtgagtttcaaatacatccctagttt
caatggagaatattttgctttggcattttttttgttaatattcatgaggg
atactggcttgtgatttttttttctgcagtgctgttcttctatacacagg
tatcaatgtcaaattagacttgaaataatcagggagttctcagtctttct
acttccagtaaccatgaaaccttaatattcctcttagcttaattatactt
tagtcatcattattcctgtcagtccacgatatggcccctaaaccccttgc
aggaattacttagaaaacttgacactgtaaattctgtctcgatgtcttgt
tgtctctccttgtctctctctgtctctatgtctatttctctctgtctctg
tctctgtctctctctcgctcactcgcttgctctctctctctctcttccac
ctacagaaaacctggattcttaagtcctataattcccctttgtatttttc
tttaagtgtgtgaacctcatttctcaaaagcaggaggagtataatgatga
ttatttacaaactagaaaatatccttttttcattttattggaagtattcg
ttatttgaggatgtcatatacatatataacatatataacatatataacat
atatatttgattatagccccgactacccctttccaacagaggactgcctt
ctacccaaataccctcccaaattcacattcttctaaattcataacctttt
aaaaataacactctatgttcaattggtatttccataatgtatatgagtgc
aggatcatctactgaaaagtgggtgtgttatcagtggtcacaccactggg
ggcaggtgggaaccctctttctccaccagcagccaatgactcctaaagca
gggctgagattgcatgaaccccctcctatccatgctggattcgtaaattc
atcactcttaccctctggcttccatggccttgttttttggttattttttg
tgtg
gaattcaactgaatatatgtctttaaacattatcagacacagtgagttat
ttattgtttaaagtgctacagaatctgctttgaaatgccaagtagagact
ggcaaattcagatgggagtaaacttgctagtttgtaactttaattttttc
aaagcctattttaaatgatatttcttaaatgctttagtctcccttgaagc
ccaccactcagtgaaggtagtgggaaagaaaagatacaggggaaatgagc
ctttttagaaaggttctgtgaaacaactcgtatcactattgcctggaaac
cagcagttcagttcacaggttacctgcagcagttctatccactcataaac
acattactggtacagtagcagtccagtttggtaaagtcagcatggcaaac
aggaatcggcagtggtgacactacctaacagaaacagccatgccttagcc
tcagctggagtcagaaggaaggacctgatagttaagtagtattcatatgg
gatgaatccaaataacagtgtatacacattgcaaacttagcaaattgaaa
ctattgaatccggggtgtgaaagcaaaatccaacctttcttcgcaggact
taaacaagaccttgctacaatattcagttctgtaatgttcgggcctgtaa
agaattattaaattctcagctgcataagagaaaataaatgaatacatgcc
aaaacacgctggcaatgcagatgccagtattatctgataaagaattcaaa
tcagcacctttgaaaagtctcagatgactaatcataaacacacttgaaac
aaatataaccaaaagggcatgggactaacagagatgaacactaggcacct
agtgagagcacttcgtcccccagacattagattttcaaagtggctttact
cttaaactttcaatatggtttctatactatcaaatcacaacttctaatga
tccctgatgtatcagagatgtagaatacttattctagagtggttttattc
tttatctagagaaaaagtatttaatgcatgtgactcatttcttcttaccc
aaactagcttcaatttcaagttcataaacacctcttattataaccatgac
attcatgtaaataataatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89943522_89944575
seq2: B6Ng01-148B02.b_45_1093

seq1  GAATTCTATCGTTTTTAAAAATCTAAAGGCAGTTCTGTGTTCTCAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCGTTTTTAAAAATCTAAAGGCAGTTCTGTGTTCTCAAAATA  50

seq1  AAACCAACATAGAGGTAATGCATTGTGAGTTTCAAATACATCCCTAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAACATAGAGGTAATGCATTGTGAGTTTCAAATACATCCCTAGTTT  100

seq1  CAATGGAGAATATTTTGCTTTGGCATTTTTTTTGTTAATATTCATGAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAGAATATTTTGCTTTGGCATTTTTTTTGTTAATATTCATGAGGG  150

seq1  ATACTGGCTTGTGATTTTTTTTTCTGCAGTGCTGTTCTTCTATACACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGCTTGTGATTTTTTTTTCTGCAGTGCTGTTCTTCTATACACAGG  200

seq1  TATCAATGTCAAATTAGACTTGAAATAATCAGGGAGTTCTCAGTCTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATGTCAAATTAGACTTGAAATAATCAGGGAGTTCTCAGTCTTTCT  250

seq1  ACTTCCAGTAACCATGAAACCTTAATATTCCTCTTAGCTTAATTATACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAGTAACCATGAAACCTTAATATTCCTCTTAGCTTAATTATACTT  300

seq1  TAGTCATCATTATTCCTGTCAGTCCACGATATGGCCCCTAAACCCCTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATCATTATTCCTGTCAGTCCACGATATGGCCCCTAAACCCCTTGC  350

seq1  AGGAATTACTTAGAAAACTTGACACTGTAAATTCTGTCTCGATGTCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTACTTAGAAAACTTGACACTGTAAATTCTGTCTCGATGTCTTGT  400

seq1  TGTCTCTCCTTGTCTCTCTCTGTCTCTATGTCTATTTCTCTCTGTCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCCTTGTCTCTCTCTGTCTCTATGTCTATTTCTCTCTGTCTCTG  450

seq1  TCTCTGTCTCTCTCTCGCTCACTCGCTTGCTCTCTCTCTCTCTCTTCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTCTCTCTCGCTCACTCGCTTGCTCTCTCTCTCTCTCTTCCAC  500

seq1  CTACAGAAAACCTGGATTCTTAAGTCCTATAATTCCCCTTTGTATTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAAAACCTGGATTCTTAAGTCCTATAATTCCCCTTTGTATTTTTC  550

seq1  TTTAAGTGTGTGAACCTCATTTCTCAAAAGCAGGAGGAGTATAATGATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTGTGTGAACCTCATTTCTCAAAAGCAGGAGGAGTATAATGATGA  600

seq1  TTATTTACAAACTAGAAAATATCCTTTTTTCATTTTATTGGAAGTATTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACAAACTAGAAAATATCCTTTTTTCATTTTATTGGAAGTATTCG  650

seq1  TTATTTGAGGATGTCATATACATATATAACATATATAACATATATAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGAGGATGTCATATACATATATAACATATATAACATATATAACAT  700

seq1  ATATATTTGATTATAGCCCCGACTACCCCTTTCCAACAGAGGACTGCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTGATTATAGCCCCGACTACCCCTTTCCAACAGAGGACTGCCTT  750

seq1  CTACCCAAATACCCTCCCAAATTCACATTCTTCTAAATTCATAACCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAAATACCCTCCCAAATTCACATTCTTCTAAATTCATAACCTTTT  800

seq1  AAAAATAACACTCTATGTTCAATTGGTATTTCCATAATGTATATGAGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAACACTCTATGTTCAATTGGTATTTCCATAATGTATATGAGTGC  850

seq1  AGGATCATCTACTGAAAAGTGGGTGTGTTATCAGTGGTCACACCACTGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCATCTACTGAAAAGTGGGTGTGTTATCAGTGGTCACACCACTGGG  900

seq1  GGCAGGTGGGAACCCTCTTTCTCCACCAGCAGCCAATGACTCCTAAAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGGGAACCCTCTTTCTCCACCAGCAGCCAATGACTCCTAAAGCA  950

seq1  GGGCTGAGATTGCATGAA-CCCCTCCTAATCCATGCTGGAATTCGTTAAA  999
      |||||||||||||||||| |||||||| ||||||||||| ||||| ||||
seq2  GGGCTGAGATTGCATGAACCCCCTCCT-ATCCATGCTGG-ATTCG-TAAA  997

seq1  TTCATCACTCTTACCCTCTGGCTTTCCATTGTCTTTGTTTTTTTGTTTAT  1049
      |||||||||||||||||||||| |||||| | |||   ||||||| ||||
seq2  TTCATCACTCTTACCCTCTGGC-TTCCATGGCCTT--GTTTTTTGGTTAT  1044

seq1  TTTTT  1054
      |||||
seq2  TTTTT  1049

seq1: chr17_90037992_90039125
seq2: B6Ng01-148B02.g_66_1185 (reverse)

seq1  TCATTATTAATTTACATGAATGTCATGTGTTATAATTAGGAGTGTTTATG  50
      |||||||| |||||||||||||||||| |||||||| ||  |||||||||
seq2  TCATTATT-ATTTACATGAATGTCATG-GTTATAATAAGAGGTGTTTATG  48

seq1  AACTTGGAAAATTGAAGCTAGTTTGGGGTAAAGAAGAAATGAGTCACATG  100
      ||||||  |||||||||||||||||||   ||||||||||||||||||||
seq2  AACTTG--AAATTGAAGCTAGTTTGGG--TAAGAAGAAATGAGTCACATG  94

seq1  CAATAAATACTTTTTTTCTCTAAGATAAAGAATAAAACCACTCTAGAATT  150
      || |||||||||||| |||   |||||||||||||||||||||||||| |
seq2  CATTAAATACTTTTTCTCT---AGATAAAGAATAAAACCACTCTAGAA-T  140

seq1  AAGTAATTCTACAATCTCCTGAATACATCAAGGATCATTAGAAGTTGTGA  200
      |||| ||||||| |||| ||| |||||||| |||||||||||||||||||
seq2  AAGT-ATTCTAC-ATCT-CTG-ATACATCAGGGATCATTAGAAGTTGTGA  186

seq1  TTTGATAGTATAGAAACCATATTGAAAGTTTAAGAGTAAAGCCACTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAGTATAGAAACCATATTGAAAGTTTAAGAGTAAAGCCACTTTGA  236

seq1  AAATCTAATGTCTGGGGGACGAAGTGCTCTCACTAGGTGCCTAGTGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAATGTCTGGGGGACGAAGTGCTCTCACTAGGTGCCTAGTGTTCA  286

seq1  TCTCTGTTAGTCCCATGCCCTTTTGGTTATATTTGTTTCAAGTGTGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTAGTCCCATGCCCTTTTGGTTATATTTGTTTCAAGTGTGTTTA  336

seq1  TGATTAGTCATCTGAGACTTTTCAAAGGTGCTGATTTGAATTCTTTATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGTCATCTGAGACTTTTCAAAGGTGCTGATTTGAATTCTTTATCA  386

seq1  GATAATACTGGCATCTGCATTGCCAGCGTGTTTTGGCATGTATTCATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATACTGGCATCTGCATTGCCAGCGTGTTTTGGCATGTATTCATTTA  436

seq1  TTTTCTCTTATGCAGCTGAGAATTTAATAATTCTTTACAGGCCCGAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTATGCAGCTGAGAATTTAATAATTCTTTACAGGCCCGAACAT  486

seq1  TACAGAACTGAATATTGTAGCAAGGTCTTGTTTAAGTCCTGCGAAGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAACTGAATATTGTAGCAAGGTCTTGTTTAAGTCCTGCGAAGAAAG  536

seq1  GTTGGATTTTGCTTTCACACCCCGGATTCAATAGTTTCAATTTGCTAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATTTTGCTTTCACACCCCGGATTCAATAGTTTCAATTTGCTAAGT  586

seq1  TTGCAATGTGTATACACTGTTATTTGGATTCATCCCATATGAATACTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATGTGTATACACTGTTATTTGGATTCATCCCATATGAATACTACT  636

seq1  TAACTATCAGGTCCTTCCTTCTGACTCCAGCTGAGGCTAAGGCATGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATCAGGTCCTTCCTTCTGACTCCAGCTGAGGCTAAGGCATGGCTG  686

seq1  TTTCTGTTAGGTAGTGTCACCACTGCCGATTCCTGTTTGCCATGCTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTAGGTAGTGTCACCACTGCCGATTCCTGTTTGCCATGCTGACT  736

seq1  TTACCAAACTGGACTGCTACTGTACCAGTAATGTGTTTATGAGTGGATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAACTGGACTGCTACTGTACCAGTAATGTGTTTATGAGTGGATAG  786

seq1  AACTGCTGCAGGTAACCTGTGAACTGAACTGCTGGTTTCCAGGCAATAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGCAGGTAACCTGTGAACTGAACTGCTGGTTTCCAGGCAATAGT  836

seq1  GATACGAGTTGTTTCACAGAACCTTTCTAAAAAGGCTCATTTCCCCTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACGAGTTGTTTCACAGAACCTTTCTAAAAAGGCTCATTTCCCCTGTA  886

seq1  TCTTTTCTTTCCCACTACCTTCACTGAGTGGTGGGCTTCAAGGGAGACTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTCCCACTACCTTCACTGAGTGGTGGGCTTCAAGGGAGACTA  936

seq1  AAGCATTTAAGAAATATCATTTAAAATAGGCTTTGAAAAAATTAAAGTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTAAGAAATATCATTTAAAATAGGCTTTGAAAAAATTAAAGTTA  986

seq1  CAAACTAGCAAGTTTACTCCCATCTGAATTTGCCAGTCTCTACTTGGCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAGCAAGTTTACTCCCATCTGAATTTGCCAGTCTCTACTTGGCAT  1036

seq1  TTCAAAGCAGATTCTGTAGCACTTTAAACAATAAATAACTCACTGTGTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGCAGATTCTGTAGCACTTTAAACAATAAATAACTCACTGTGTCT  1086

seq1  GATAATGTTTAAAGACATATATTCAGTTGAATTC  1134
      ||||||||||||||||||||||||||||||||||
seq2  GATAATGTTTAAAGACATATATTCAGTTGAATTC  1120