BAC Information

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BAC

Clone NameB6Ng01-150O10
Chromosome17 (Build37)
Map Location 22,867,077 - 23,016,538
singlet/doubletdoublet
Overlap geneEG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128
Upstream geneBC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088
Downstream geneLOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150O10.bB6Ng01-150O10.g
ACCDH946860DH946861
length1,2351,192
definitionDH946860|Mus musculus domesticus DNA, BAC clone: B6Ng01-150O10, 5' end.DH946861|Mus musculus domesticus DNA, BAC clone: B6Ng01-150O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,867,077 - 22,868,335)(23,015,333 - 23,016,538)
sequence
gaattccatggaaaaggggaagaatcaaaggagccagagaggtcaaggat
accacaagaaagcatatagaaccaactaacctgggaacattggggccaac
agtgacaaagtgggccaccaatactagtctatctacagcaaaactttagt
tgattttgaaatcctggctgaatcttttcaagggtttcaaactatctgtt
ctttcttagaatgccatatatacttaggattactttgttcataaacatat
tgttcagaatctttaggaaacagcaacctcaattgtgttaccatattgta
atgagaacagctagctgtataatcacatgtcatgcatacactttatgatt
ctatttgctgttctggtttgtatgcatgttgattacggttgttagttcaa
tgttgaaaaaaatggactataattagccattttgtacagaaccacatggg
tgatgtacctgaacttttagtgaattttagcttgtttagttgtagggaaa
ctgaatattcacttgtatgatgactgtggtaagatggattcccaaagaca
ttacgtctttctgctgctttttctaaaacattcgtcactagagggccttg
agtgtggacactgactagggagaagtaagattcttcatgcacattaattg
agagttttcttcttggataacaatatgtgacagaaagagtccagacagat
tgttttcagagtcaatcagtaggaaatataagatgtgtgtgaactatgat
gagtgatgctccctgaccagaagttacaggtcctggagtatccagtatag
ttcttgagcatctctcatttcattatgtttcttgtaaaaagaaatttgga
ggattattgagcacacatagagacaaatacactaatcaggtaaaagggtg
ttctgtctgttattggaaaggaaattgttttgggtgttaattctatggag
tagcatcatggaacctggtgtaagaggcagagtgtgacccagtgatgctg
gaagctatctgactcatagagtttcttacgagatatgcaaaggaagttgt
aaaatgatgtatcagtctactctttcataatcttttcttgagtggaccca
tgagtcaaatagcttaactgtctgggcaacggtggggtacttatggcatt
ccagcctctcatggctgattcatcctctctgctatgctatctgaccttaa
gggaaattccgaaaatacagttcccttctctcagg
gaattccaggactgccagggctacagagaaagaacttatctcaaaaaaag
agaaatcatcgatcataagatggagtgttggttcatcactggctaccctt
ccagaggacccaggtttgatgcctagcaataacatataagatcacaacca
tctgtaactattgtctcgagagaatatgacaatctcctttagactctgta
agcatgtgatatacaaatgtacatgcaggcaaagcattcatatatacaca
acaacaccaccaacaacaaaaacaataacaataataataacaaaaactgt
caagcaaagaggctttcattcatgaagtaaatagctttctcaagatggtt
ggtatccctagatagtcagggagcagtccataactacttgcctcctgtct
tgcgttcaccaatgaagacatggcaataatagataaaagttagcataaaa
ttattggaaaaaaacacagcaacaatatactccagatcaaactaaccaac
tgttttacatatcaacaaacttgaatactgggaatacaaaaatgtttgca
aataatatttcatatttactccaatatacttattctcttctaccgaaata
catgtcaaatacatgtattggttttaatttgttcactatcctgcaccagc
ttgtttaatgtcttcaaatcttgtatcttaatctttagtatcagtctatc
ctaatgctttggagttcagctactactccaacttattgaatatagaaaaa
tgattttcctgtatagagttgggaatgacttagctgcgcatgaacaagcg
tgtgctttgacacccacaagttatttctataaagattttcacatttttgc
tggttgtaaagtttgacttgaggatgactgttttgaaggtgaataaaagg
tgagccttgattaaagaatgttcttgtttttttcttcagatgaaaattct
gctgtgtctacaatttgagtgctacgtaaaacatttgacaaattcaagac
attttcttaggatctgtagagtagaatttccagtttataaaagacaaaaa
tatacatagtgggtgtacaattattatagttcttggcatagattctgatg
tagtaaaatactggaagagactagagcctggtcacatctcgatttctaca
tttggtctccactcatgttttgggggtgtgaattgaaaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_22867077_22868335
seq2: B6Ng01-150O10.b_48_1282

seq1  GAATTCCATGGAAAAGGGGAAGAATCAAAGGAGCCAGAGAGGTCAAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGAAAAGGGGAAGAATCAAAGGAGCCAGAGAGGTCAAGGAT  50

seq1  ACCACAAGAAAGCATATAGAACCAACTAACCTGGGAACATTGGGGCCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAGAAAGCATATAGAACCAACTAACCTGGGAACATTGGGGCCAAC  100

seq1  AGTGACAAAGTGGGCCACCAATACTAGTCTATCTACAGCAAAACTTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAAAGTGGGCCACCAATACTAGTCTATCTACAGCAAAACTTTAGT  150

seq1  TGATTTTGAAATCCTGGCTGAATCTTTTCAAGGGTTTCAAACTATCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGAAATCCTGGCTGAATCTTTTCAAGGGTTTCAAACTATCTGTT  200

seq1  CTTTCTTAGAATGCCATATATACTTAGGATTACTTTGTTCATAAACATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTAGAATGCCATATATACTTAGGATTACTTTGTTCATAAACATAT  250

seq1  TGTTCAGAATCTTTAGGAAACAGCAACCTCAATTGTGTTACCATATTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGAATCTTTAGGAAACAGCAACCTCAATTGTGTTACCATATTGTA  300

seq1  ATGAGAACAGCTAGCTGTATAATCACATGTCATGCATACACTTTATGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAACAGCTAGCTGTATAATCACATGTCATGCATACACTTTATGATT  350

seq1  CTATTTGCTGTTCTGGTTTGTATGCATGTTGATTACGGTTGTTAGTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGCTGTTCTGGTTTGTATGCATGTTGATTACGGTTGTTAGTTCAA  400

seq1  TGTTGAAAAAAATGGACTATAATTAGCCATTTTGTACAGAACCACATGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAAAAAATGGACTATAATTAGCCATTTTGTACAGAACCACATGGG  450

seq1  TGATGTACCTGAACTTTTAGTGAATTTTAGCTTGTTTAGTTGTAGGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTACCTGAACTTTTAGTGAATTTTAGCTTGTTTAGTTGTAGGGAAA  500

seq1  CTGAATATTCACTTGTATGATGACTGTGGTAAGATGGATTCCCAAAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATATTCACTTGTATGATGACTGTGGTAAGATGGATTCCCAAAGACA  550

seq1  TTACGTCTTTCTGCTGCTTTTTCTAAAACATTCGTCACTAGAGGGCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGTCTTTCTGCTGCTTTTTCTAAAACATTCGTCACTAGAGGGCCTTG  600

seq1  AGTGTGGACACTGACTAGGGAGAAGTAAGATTCTTCATGCACATTAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGACACTGACTAGGGAGAAGTAAGATTCTTCATGCACATTAATTG  650

seq1  AGAGTTTTCTTCTTGGATAACAATATGTGACAGAAAGAGTCCAGACAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTTCTTCTTGGATAACAATATGTGACAGAAAGAGTCCAGACAGAT  700

seq1  TGTTTTCAGAGTCAATCAGTAGGAAATATAAGATGTGTGTGAACTATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGAGTCAATCAGTAGGAAATATAAGATGTGTGTGAACTATGAT  750

seq1  GAGTGATGCTCCCTGACCAGAAGTTACAGGTCCTGGAGTATCCAGTATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATGCTCCCTGACCAGAAGTTACAGGTCCTGGAGTATCCAGTATAG  800

seq1  TTCTTGAGCATCTCTCATTTCATTATGTTTCTTGTAAAAAGAAATTTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGCATCTCTCATTTCATTATGTTTCTTGTAAAAAGAAATTTGGA  850

seq1  GGATTATTGAGCACACATAGAGACAAATACACTAATCAGGTAAAAGGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATTGAGCACACATAGAGACAAATACACTAATCAGGTAAAAGGGTG  900

seq1  TTCTGTCTGTTATTGGAAAGGAAATTGTTTTGGGTGTTAATTCTATGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTGTTATTGGAAAGGAAATTGTTTTGGGTGTTAATTCTATGGAG  950

seq1  TAGCATCATGGAACCTGGTGTAAAGAGGCAGAGGTGTGACCCAGTGATGC  1000
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  TAGCATCATGGAACCTGGTGT-AAGAGGCAGA-GTGTGACCCAGTGATGC  998

seq1  TGGAAGCTATCCTGACTCAATTAAGAGTTTCTACAGAGATAATGCAAAAG  1050
      |||||||||| ||||||||    |||||||||   ||||| |||| ||||
seq2  TGGAAGCTAT-CTGACTCA---TAGAGTTTCTTACGAGAT-ATGC-AAAG  1042

seq1  GCAGTTGTAAAAATGAATGTATCAGGTCTACTCCTTTCAT-ATCTTTTCT  1099
      | |||||| |||||| |||||||| ||||||| ||||||| |||||||| 
seq2  GAAGTTGT-AAAATG-ATGTATCA-GTCTACT-CTTTCATAATCTTTTC-  1087

seq1  TTGAGTGGGACCCCATGAGTCAAAATAGCTTACCTGTCTGAGCAACGGTG  1149
      ||||||||   |||||||||| |||||||||| ||||||| |||||||| 
seq2  TTGAGTGG--ACCCATGAGTC-AAATAGCTTAACTGTCTGGGCAACGGT-  1133

seq1  GGGGTACTTATTGCA-TCCAGCCTACTCAGTGCTGGATTCATCACTCTCT  1198
      ||||||||||| ||| |||||||| ||||  ||| |||||||| ||||||
seq2  GGGGTACTTATGGCATTCCAGCCT-CTCATGGCT-GATTCATC-CTCTCT  1180

seq1  GCTATGCCCTATCAGTGGACATCTAGGGAAATTCCCAAAAATACAGTCCC  1248
      ||||||  |||||    ||| |  ||||||||| || |||||||||| ||
seq2  GCTATG--CTATC---TGACCTTAAGGGAAATT-CCGAAAATACAGTTCC  1224

seq1  CTTCTCTCAGG  1259
      |||||||||||
seq2  CTTCTCTCAGG  1235

seq1: chr17_23015333_23016538
seq2: B6Ng01-150O10.g_68_1259 (reverse)

seq1  ATTTTTTCTAATTCAACACCCAAAAACAATGA-TGGAGACAAAAATGTAG  49
      |||||||| ||||| ||||||  |||  |||| |||||||  ||||||||
seq2  ATTTTTTC-AATTC-ACACCCCCAAAACATGAGTGGAGAC-CAAATGTAG  47

seq1  AAAATCTGAAGAATGTGACCAGGCTCTTAGGTCTCTT-CAGTA-TTTACT  97
      |||   |  || |||||||||||||||   ||||||| ||||| ||||||
seq2  AAA---TCGAG-ATGTGACCAGGCTCT--AGTCTCTTCCAGTATTTTACT  91

seq1  ACATCAGAAAATTCTTATTGCAAAGAAACTAT-ATAATTGTACA-CCACT  145
      |||||||||   |||   ||| ||| |||||| ||||||||||| |||||
seq2  ACATCAGAA---TCT--ATGCCAAG-AACTATAATAATTGTACACCCACT  135

seq1  ATGTTATATTTTTGTCTTTTTATAAACTGGAAATTCTACTCTACAGAATC  195
      ||| |||||||||||| ||||||||||||||||||||||||||||| |||
seq2  ATG-TATATTTTTGTC-TTTTATAAACTGGAAATTCTACTCTACAG-ATC  182

seq1  CTAAG-AAATGTCTTGAATTTGTCAAATGTTTTTACGTAGCACTCAAATT  244
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTAAGAAAATGTCTTGAATTTGTCAAATG-TTTTACGTAGCACTCAAATT  231

seq1  GTAGACACAGCAGAATTTTCATCCTGAAGAAAAAAACAAGAACATTCTTT  294
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTAGACACAGCAGAATTTTCAT-CTGAAGAAAAAAACAAGAACATTCTTT  280

seq1  AATCAAGGCTCACCTTTTATTCACCTTCAAAACAGTCATCCTCAAGTCAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGGCTCACCTTTTATTCACCTTCAAAACAGTCATCCTCAAGTCAA  330

seq1  ACTTTACAACCAGCAAAAATGTGAAAATCTTTATAGAAATAACTTGTGGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACAACCAGCAAAAATGTGAAAATCTTTATAGAAATAACTTGTGGG  380

seq1  TGTCAAAGCACACGCTTGTTCATGCGCAGCTAAGTCATTCCCAACTCTAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAGCACACGCTTGTTCATGCGCAGCTAAGTCATTCCCAACTCTAT  430

seq1  ACAGGAAAATCATTTTTCTATATTCAATAAGTTGGAGTAGTAGCTGAACT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAATCATTTTTCTATATTCAATAAGTTGGAGTAGTAGCTGAACT  480

seq1  CCAAAGCATTAGGATAGACTGATACTAAAGATTAAGATACAAGATTTGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCATTAGGATAGACTGATACTAAAGATTAAGATACAAGATTTGAA  530

seq1  GACATTAAACAAGCTGGTGCAGGATAGTGAACAAATTAAAACCAATACAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTAAACAAGCTGGTGCAGGATAGTGAACAAATTAAAACCAATACAT  580

seq1  GTATTTGACATGTATTTCGGTAGAAGAGAATAAGTATATTGGAGTAAATA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGACATGTATTTCGGTAGAAGAGAATAAGTATATTGGAGTAAATA  630

seq1  TGAAATATTATTTGCAAACATTTTTGTATTCCCAGTATTCAAGTTTGTTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATTATTTGCAAACATTTTTGTATTCCCAGTATTCAAGTTTGTTG  680

seq1  ATATGTAAAACAGTTGGTTAGTTTGATCTGGAGTATATTGTTGCTGTGTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAAACAGTTGGTTAGTTTGATCTGGAGTATATTGTTGCTGTGTT  730

seq1  TTTTTCCAATAATTTTATGCTAACTTTTATCTATTATTGCCATGTCTTCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCAATAATTTTATGCTAACTTTTATCTATTATTGCCATGTCTTCA  780

seq1  TTGGTGAACGCAAGACAGGAGGCAAGTAGTTATGGACTGCTCCCTGACTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAACGCAAGACAGGAGGCAAGTAGTTATGGACTGCTCCCTGACTA  830

seq1  TCTAGGGATACCAACCATCTTGAGAAAGCTATTTACTTCATGAATGAAAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGATACCAACCATCTTGAGAAAGCTATTTACTTCATGAATGAAAG  880

seq1  CCTCTTTGCTTGACAGTTTTTGTTATTATTATTGTTATTGTTTTTGTTGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTGCTTGACAGTTTTTGTTATTATTATTGTTATTGTTTTTGTTGT  930

seq1  TGGTGGTGTTGTTGTGTATATATGAATGCTTTGCCTGCATGTACATTTGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGTTGTTGTGTATATATGAATGCTTTGCCTGCATGTACATTTGT  980

seq1  ATATCACATGCTTACAGAGTCTAAAGGAGATTGTCATATTCTCTCGAGAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACATGCTTACAGAGTCTAAAGGAGATTGTCATATTCTCTCGAGAC  1030

seq1  AATAGTTACAGATGGTTGTGATCTTATATGTTATTGCTAGGCATCAAACC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTACAGATGGTTGTGATCTTATATGTTATTGCTAGGCATCAAACC  1080

seq1  TGGGTCCTCTGGAAGGGTAGCCAGTGATGAACCAACACTCCATCTTATGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCTCTGGAAGGGTAGCCAGTGATGAACCAACACTCCATCTTATGA  1130

seq1  TCGATGATTTCTCTTTTTTTGAGATAAGTTCTTTCTCTGTAGCCCTGGCA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATGATTTCTCTTTTTTTGAGATAAGTTCTTTCTCTGTAGCCCTGGCA  1180

seq1  GTCCTGGAATTC  1206
      ||||||||||||
seq2  GTCCTGGAATTC  1192