BAC Information

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BAC

Clone NameB6Ng01-152F13
Chromosome17 (Build37)
Map Location 58,721,349 - 58,722,448
singlet/doubletsinglet
Overlap geneEG545216
Upstream geneCntnap5c, LOC674419, LOC620408
Downstream geneLOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152F13.bB6Ng01-152F13.g
ACCDH947943DH947944
length1,1731,100
definitionDH947943|Mus musculus domesticus DNA, BAC clone: B6Ng01-152F13, 5' end.DH947944|Mus musculus domesticus DNA, BAC clone: B6Ng01-152F13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcgcctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tctacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaagaacacatgctccactat
gttcatagcagtcttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttactaaacacgtgaaactcaag
aagaatgatgactgaagtgtggacacaatgcccctccttagaattgggaa
caaaacacccatggaaggagttacaaagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagatcttatcaaag
gacccagatgtagctgtctcttgtgagactatgccagggcctagcaaaca
cagaagtggatgctcacagtcagctaatggatggatcacaggcttctaat
ggaggagctagagaaagtacccaaggagctaaagggatctgcaccctata
gtggaacaacattatgactaccagtacccggagctcttgacttctagctg
catatgtatcaaagatggcctagtcggccatcactgaaagagaggcccat
tggaaacgcaacctatattgcccagtacaagggacgccagggcaaaaaac
ggaatggcgtgggtaagggatgt
gaattctgtttgttatggcacatatcacatatcacatagatggcaggtat
agcataaagccagggtgttgcaggaactagtaacatgacatctgcagtca
ggaaacatggggaaatgaatgctagtattcaacttcactcatggtttcat
tcagtctagcactgcagcccatagaatcatgttgcccaaaattaaggtgt
tctttcttcctccattaacctaatctagaaactagtgttaagcagatatg
cccagaaaattgtttcttagtaattctatgtcttatcaaattcccaatgt
taatgttcacaatggatactggcatttatttgatattgctctaggtgtat
tgtatccgcataaacattatcttagaccacattggtttatatggtatata
tattcaatagatatattatgtgcatattatgcttgccaaaaattacatag
taatcttcctaaagactcccttatttgagaaaattcatatcatttggaaa
ataatgagcacatctcttaatttagtgtaatcatgtatttcaaggacttt
gaaaattcggtggtcttcaccaataaactagacttcgatggtttgaagtg
ggatgcagcagggtaaaatgcacacaaatgcacatgcataaagatatacc
acctcagttcccaaaacaactttctagctatcttcgatcctctataatgc
tgtcctctgtcctcacattttgctttattttgtcttttcttgggcctctt
tgagaacatgaaccactaactattaagaattaaaaggcacagggaatgtt
catcatggtcctattggtttgatccagtcacttcattatggtaaaagtag
aaaatgagatagcctatgtagtgtctggtgttgtctttctatttgtgtta
cccaaaagaacttgtttgcagtgtttgaaacatgggctaaaggaagcttg
actccagctggttctgattggtaataaagaattaccataatagcatggct
ggtcagagggagacaggacaggactttgagaattacatggctagaactga
ggaaacagagattccttacgatttttgatggaatggatcagatttaaagc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_58721349_58722448
seq2: B6Ng01-152F13.g_67_1166

seq1  GAATTCTGTTTGTTATGGCACATATCACATATCACATAGATGGCAGGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTGTTATGGCACATATCACATATCACATAGATGGCAGGTAT  50

seq1  AGCATAAAGCCAGGGTGTTGCAGGAACTAGTAACATGACATCTGCAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAAGCCAGGGTGTTGCAGGAACTAGTAACATGACATCTGCAGTCA  100

seq1  GGAAACATGGGGAAATGAATGCTAGTATTCAACTTCACTCATGGTTTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATGGGGAAATGAATGCTAGTATTCAACTTCACTCATGGTTTCAT  150

seq1  TCAGTCTAGCACTGCAGCCCATAGAATCATGTTGCCCAAAATTAAGGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTAGCACTGCAGCCCATAGAATCATGTTGCCCAAAATTAAGGTGT  200

seq1  TCTTTCTTCCTCCATTAACCTAATCTAGAAACTAGTGTTAAGCAGATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCCTCCATTAACCTAATCTAGAAACTAGTGTTAAGCAGATATG  250

seq1  CCCAGAAAATTGTTTCTTAGTAATTCTATGTCTTATCAAATTCCCAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAAATTGTTTCTTAGTAATTCTATGTCTTATCAAATTCCCAATGT  300

seq1  TAATGTTCACAATGGATACTGGCATTTATTTGATATTGCTCTAGGTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTCACAATGGATACTGGCATTTATTTGATATTGCTCTAGGTGTAT  350

seq1  TGTATCCGCATAAACATTATCTTAGACCACATTGGTTTATATGGTATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCGCATAAACATTATCTTAGACCACATTGGTTTATATGGTATATA  400

seq1  TATTCAATAGATATATTATGTGCATATTATGCTTGCCAAAAATTACATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATAGATATATTATGTGCATATTATGCTTGCCAAAAATTACATAG  450

seq1  TAATCTTCCTAAAGACTCCCTTATTTGAGAAAATTCATATCATTTGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTCCTAAAGACTCCCTTATTTGAGAAAATTCATATCATTTGGAAA  500

seq1  ATAATGAGCACATCTCTTAATTTAGTGTAATCATGTATTTCAAGGACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAGCACATCTCTTAATTTAGTGTAATCATGTATTTCAAGGACTTT  550

seq1  GAAAATTCGGTGGTCTTCACCAATAAACTAGACTTCGATGGTTTGAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTCGGTGGTCTTCACCAATAAACTAGACTTCGATGGTTTGAAGTG  600

seq1  GGATGCAGCAGGGTAAAATGCACACAAATGCACATGCATAAAGATATACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAGCAGGGTAAAATGCACACAAATGCACATGCATAAAGATATACC  650

seq1  ACCTCAGTTCCCAAAACAACTTTCTAGCTATCTTCGATCCTCTATAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGTTCCCAAAACAACTTTCTAGCTATCTTCGATCCTCTATAATGC  700

seq1  TGTCCTCTGTCCTCACA-TTTGCTT--ATTTGTCTTTTCTTGGGCCTCTT  747
      ||||||||||||||||| |||||||   ||||||||||||||||||||||
seq2  TGTCCTCTGTCCTCACATTTTGCTTTATTTTGTCTTTTCTTGGGCCTCTT  750

seq1  TGAGAACATGAACCACTAACTATTAAGAATT-AAAGGCACAGGGAATGTT  796
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGAGAACATGAACCACTAACTATTAAGAATTAAAAGGCACAGGGAATGTT  800

seq1  CATCATGGTCCTATTGGTTTGATCCAGTCACTTCATTATGGTAAAAGTAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGGTCCTATTGGTTTGATCCAGTCACTTCATTATGGTAAAAGTAG  850

seq1  AAAATGAGATAGCCTATGTAGTGTCTGGTGTTGTCTTTCTAATTGTGTTA  896
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAATGAGATAGCCTATGTAGTGTCTGGTGTTGTCTTTCTATTTGTGTTA  900

seq1  CCCAAAAGAACTTGTTTGCAGTGTCTGACACATGGGCTAAAGGAAGCCTG  946
      |||||||||||||||||||||||| ||| |||||||||||||||||| ||
seq2  CCCAAAAGAACTTGTTTGCAGTGTTTGAAACATGGGCTAAAGGAAGCTTG  950

seq1  ACTCCAGCTGGTTCTGATTGGTAATAAAGAATTACCAT-ATAGCCAATGG  995
      |||||||||||||||||||||||||||||||||||||| |||||  ||||
seq2  ACTCCAGCTGGTTCTGATTGGTAATAAAGAATTACCATAATAGC--ATGG  998

seq1  CTGGTCAGAGGGAGACAGGACAGGACTTTGAGATTTACATGGGCTAAGAA  1045
      ||||||||||||||||||||||||||||||||| |||||| |||| ||||
seq2  CTGGTCAGAGGGAGACAGGACAGGACTTTGAGAATTACAT-GGCT-AGAA  1046

seq1  CTGAAGGAGACAGAGATTCACTACGATTCTGAATGGAATGGATCAGATTT  1095
      ||| |||| ||||||||||  ||||||| |  ||||||||||||||||||
seq2  CTG-AGGAAACAGAGATTCCTTACGATTTTTGATGGAATGGATCAGATTT  1095

seq1  AAAGC  1100
      |||||
seq2  AAAGC  1100