BAC Information

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BAC

Clone NameB6Ng01-155D06
Chromosome11 (Build37)17 (Build37)
Map Location 109,935,023 - 109,936,18020,654,027 - 20,654,075
singlet/doubletsingletsinglet
Overlap geneAbca8a
Upstream geneE030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1, Prkar1a, BC029169, 1700012B07Rik, 1700023C21Rik, LOC100041492, Abca8b
Downstream geneAbca9, Abca6, Abca5, Map2k6, LOC100041523, Kcnj16, Kcnj2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155D06.bB6Ng01-155D06.g
ACCDH950050DH950051
length1,153352
definitionDH950050|Mus musculus domesticus DNA, BAC clone: B6Ng01-155D06, 5' end.DH950051|Mus musculus domesticus DNA, BAC clone: B6Ng01-155D06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,935,023 - 109,936,180)(20,654,027 - 20,654,075)
sequence
gaattcaactctttatttccacagatatcagataagatggcattttcccc
ctttcacttaagcaaattaagtataaatttaattgttctttcttttggac
attggccaaaaccttgggcaatttgtgatacaattcattttttctcaagg
atcaattaaaaaattcaatctaatttgatatatatgcttttcccatatat
gcttaacaatattttatattgctttgatacttccaatatatacatataca
tatatatacatatatatcttatgtattacttcattttaaggagatatatt
tttgccaagtgtagagctctaaactggcaggtttgtttttatttcaacag
tacaagcttactgattttaatctcatttaaatgtatgccatcaccatctt
ctgactcctatggtccccagcaggaagtgcctgttcattcttatctttgt
ttccttcttttatgttcatttatttcagcatcttttttatgatttttttc
ttttcattgcttttaaaccttctgattttaaaatgaatttgtgtcatgtg
tgtacatgtcaatgtgtgtgtgtgtgcatatgtgtgagcaagtactcatc
tttagaggtggagaggggcttaaaacagtggctgatccaatgtgcaattg
cactggttcaacaggtgaatatggacgtcgacacccacccttgtttttcc
tgaagtcctcattttggtcaggacaaaatccagccaatcggactgccctt
gacaatgaaacagactatgagttttctgatgactcttttgaacctgtgtc
tatggaattccatgggaaggaagccatcacgtaagatcagatgtagtgca
gatagtcacagctatgtgagtttgtgagtgacagctatgtcatgtacagg
aatagaagttcccagaggccctgtctgtcttccatctttcacattctttc
tgtctcctgttcttctaagttcctgagcctgggcagctgagcgtgttgtt
atttttccaatttctaatcctaactttcactttctaatatggagcctgcc
ccatagaatacccttcttgcctgctttgggttaattttacctcagccaag
aagtctatatcaagacgccgcgctttgctactagtctctatgttgccttc
tgg
ctactgaattccaagtttgttggcttcaaggattttctaggacattggaa
cgctggtgaaggcttagctatgtcagaattcaatctttaaagacacttat
aataaaataattctaaaagagagcacgtggacccatacaacagactaaag
cagggatagggtatgagtatacgggttatgagaatgccaaggttccagga
ggttgagtttccttgaaactctttgcctcgtgagtgcttccaggcctctc
ggcctgccaagcagacttcactggaatgtgcatagcaaagaagaagaaga
agaagaagaagaagaagaagaagaagaagacgaagaagaaggaggaggag
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_109935023_109936180
seq2: B6Ng01-155D06.b_48_1200 (reverse)

seq1  CCAGAGAGGCAACAATAGAGACTAGTAGACAAAAGCAGCGTCTTGATAT-  49
      ||||| ||||||| ||||||||||||||  ||  || |||||||||||| 
seq2  CCAGA-AGGCAAC-ATAGAGACTAGTAGCAAAGCGCGGCGTCTTGATATA  48

seq1  GACTTTCTTTGCCTGAGGTTAAAAATTAACCAAAAGCAGGGCAAGAAGGG  99
      |||||   ||| |||||||  |||||||||| |||||| |||||||||||
seq2  GACTT--CTTGGCTGAGGT--AAAATTAACCCAAAGCA-GGCAAGAAGGG  93

seq1  TA-TCTATGGGGCAGGCTCCATATTAGAAAGTGAAAGTTAGGATTAGAAA  148
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTATGGGGCAGGCTCCATATTAGAAAGTGAAAGTTAGGATTAGAAA  143

seq1  TTGG-AAAATAACAACACGCTCAGCTGCCCAGGCTCAAGGAACTTAGAAG  197
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTGGAAAAATAACAACACGCTCAGCTGCCCAGGCTC-AGGAACTTAGAAG  192

seq1  AACAGGAGACAGAAAGAATGTGAAAGATGGAAGACAGACAGGGCCTCTGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAGACAGAAAGAATGTGAAAGATGGAAGACAGACAGGGCCTCTGG  242

seq1  GAACTTCTATTCCTGTACATGACATAGCTGTCACTCACAAACTCACATAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCTATTCCTGTACATGACATAGCTGTCACTCACAAACTCACATAG  292

seq1  CTGTGACTATCTGCACTACATCTGATCTTACCTGATGGCTTCCTTCCCAT  347
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGTGACTATCTGCACTACATCTGATCTTACGTGATGGCTTCCTTCCCAT  342

seq1  GGAATTCCATAGACACAGGTTCAAAAGAGTCATCAGAAAACTCATAGTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCCATAGACACAGGTTCAAAAGAGTCATCAGAAAACTCATAGTCT  392

seq1  GTTTCATTGTCAAGGGCAGTCCGATTGGCTGGATTTTGTCCTGACCAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTGTCAAGGGCAGTCCGATTGGCTGGATTTTGTCCTGACCAAAA  442

seq1  TGAGGACTTCAGGAAAAACAAGGGTGGGTGTCGACGTCCATATTCACCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACTTCAGGAAAAACAAGGGTGGGTGTCGACGTCCATATTCACCTG  492

seq1  TTGAACCAGTGCAATTGCACATTGGATCAGCCACTGTTTTAAGCCCCTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCAGTGCAATTGCACATTGGATCAGCCACTGTTTTAAGCCCCTCT  542

seq1  CCACCTCTAAAGATGAGTACTTGCTCACACATATGCACACACACACACAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTAAAGATGAGTACTTGCTCACACATATGCACACACACACACAT  592

seq1  TGACATGTACACACATGACACAAATTCATTTTAAAATCAGAAGGTTTAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGTACACACATGACACAAATTCATTTTAAAATCAGAAGGTTTAAA  642

seq1  AGCAATGAAAAGAAAAAAATCATAAAAAAGATGCTGAAATAAATGAACAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGAAAAGAAAAAAATCATAAAAAAGATGCTGAAATAAATGAACAT  692

seq1  AAAAGAAGGAAACAAAGATAAGAATGAACAGGCACTTCCTGCTGGGGACC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGGAAACAAAGATAAGAATGAACAGGCACTTCCTGCTGGGGACC  742

seq1  ATAGGAGTCAGAAGATGGTGATGGCATACATTTAAATGAGATTAAAATCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGTCAGAAGATGGTGATGGCATACATTTAAATGAGATTAAAATCA  792

seq1  GTAAGCTTGTACTGTTGAAATAAAAACAAACCTGCCAGTTTAGAGCTCTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTTGTACTGTTGAAATAAAAACAAACCTGCCAGTTTAGAGCTCTA  842

seq1  CACTTGGCAAAAATATATCTCCTTAAAATGAAGTAATACATAAGATATAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGCAAAAATATATCTCCTTAAAATGAAGTAATACATAAGATATAT  892

seq1  ATGTATATATATGTATATGTATATATTGGAAGTATCAAAGCAATATAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATATATGTATATGTATATATTGGAAGTATCAAAGCAATATAAAA  942

seq1  TATTGTTAAGCATATATGGGAAAAGCATATATATCAAATTAGATTGAATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTAAGCATATATGGGAAAAGCATATATATCAAATTAGATTGAATT  992

seq1  TTTTAATTGATCCTTGAGAAAAAATGAATTGTATCACAAATTGCCCAAGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTGATCCTTGAGAAAAAATGAATTGTATCACAAATTGCCCAAGG  1042

seq1  TTTTGGCCAATGTCCAAAAGAAAGAACAATTAAATTTATACTTAATTTGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCCAATGTCCAAAAGAAAGAACAATTAAATTTATACTTAATTTGC  1092

seq1  TTAAGTGAAAGGGGGAAAATGCCATCTTATCTGATATCTGTGGAAATAAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGAAAGGGGGAAAATGCCATCTTATCTGATATCTGTGGAAATAAA  1142

seq1  GAGTTGAATTC  1158
      |||||||||||
seq2  GAGTTGAATTC  1153

seq1: chr17_20654027_20654075
seq2: B6Ng01-155D06.g_387_426 (reverse)

seq1  TCCTCCTCCTCCTTCTCATTCTTCTTCGTCTTCTTCCATTTCTTCTTCT  49
      ||||||||||||      ||||||||||||||||||   ||||||||||
seq2  TCCTCCTCCTCC------TTCTTCTTCGTCTTCTTC---TTCTTCTTCT  40