BAC Information

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BAC

Clone NameB6Ng01-156O16
Chromosome17 (Build37)
Map Location 51,157,735 - 51,271,709
singlet/doubletdoublet
Overlap geneTbc1d5
Upstream geneRftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432
Downstream geneLOC100043451, LOC100043452, Satb1, EG628919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156O16.bB6Ng01-156O16.g
ACCDH951290DH951291
length3301,043
definitionDH951290|Mus musculus domesticus DNA, BAC clone: B6Ng01-156O16, 5' end.DH951291|Mus musculus domesticus DNA, BAC clone: B6Ng01-156O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,271,380 - 51,271,709)(51,157,735 - 51,158,772)
sequence
aagcatactctagcatacttacaaataaatcacagtactccacagcgcac
ttgtgatagaaaggtcagtgtaacttggatgtgctttccttttctcctaa
gagaataagctagtaaatctttaagtcacctggctgctactttgtgctag
tttgtgtgacaattatcagtggttctgttattttcttcatggtgacaaaa
agtattttgaaattcttgtatggagatgtaatttttactggaaagcatct
tatgtgtatttagctttagatgctgtttgccatggctggtaaagaaccgg
gattgggggtaggttatagggagaggtgga
gaattcaagacttaactctaagataagaaattcccagatttgttgcagaa
ttttccctgtccaatcacattaggcagcaggaggcttgtgactggacagg
agaaggaggcagagcgagaatggaaggagacggagaggtatgagggggag
agggagaaccagaatgcaggctgacattctatcaaaatgttagaagaagc
cgggcagtggtggcgcacaccttttatcccaggacttgggaggcagaaac
aggcagataagttcgaggccaacttggtctacggagtgagttctaggaca
ggcagggctatacagagaaaccatgtctcaaaaaaaaaaccaataaataa
atacataaataaataaataaaatgttagaataattgtgttaaagctttat
cattatcatttggctctgaaattactatattggcctcttgtaaattctgt
tattattgatacttaaatctgattggctaattaagcattagagtcttgat
tctaccaagtaattaggtgttgagatggctaaccaagagtgtgtggagct
ttgggtaaaagcaagaggaactcaggggacccatccaagatgtggcctaa
cagggctggccaggtggcaggcagagagaacaagccagtgagatcaactg
gtgcagggggctagctctagatattttctggaatacagattagtgtttta
aaacaaagtacttttgagaactatttttgcttattttatattatacaaac
atataaattttctgtcataacataatttattgtgagtgattttcttatat
tcaaaatttcaaatattaaagcaatattaagaaagaaaaactgaagttga
cactactaaagctgtttcaggagacacgttcccttccttaacagatatta
aacatttttaattcatatttacaccaataagtaaataggacttgttattg
tcaaccatgaaaaaataacaaaagaatttggtattctgtacatttttgcc
gtctttctttctgaattttccatatgcttccaccactttataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_51271380_51271709
seq2: B6Ng01-156O16.b_54_383 (reverse)

seq1  TCCACCTCTCCCTATAACCTACCCCCAATCCCGGTTCTTTACCAGCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCTCCCTATAACCTACCCCCAATCCCGGTTCTTTACCAGCCATG  50

seq1  GCAAACAGCATCTAAAGCTAAATACACATAAGATGCTTTCCAGTAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAGCATCTAAAGCTAAATACACATAAGATGCTTTCCAGTAAAAAT  100

seq1  TACATCTCCATACAAGAATTTCAAAATACTTTTTGTCACCATGAAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTCCATACAAGAATTTCAAAATACTTTTTGTCACCATGAAGAAAA  150

seq1  TAACAGAACCACTGATAATTGTCACACAAACTAGCACAAAGTAGCAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAACCACTGATAATTGTCACACAAACTAGCACAAAGTAGCAGCCA  200

seq1  GGTGACTTAAAGATTTACTAGCTTATTCTCTTAGGAGAAAAGGAAAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTTAAAGATTTACTAGCTTATTCTCTTAGGAGAAAAGGAAAGCAC  250

seq1  ATCCAAGTTACACTGACCTTTCTATCACAAGTGCGCTGTGGAGTACTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGTTACACTGACCTTTCTATCACAAGTGCGCTGTGGAGTACTGTG  300

seq1  ATTTATTTGTAAGTATGCTAGAGTATGCTT  330
      ||||||||||||||||||||||||||||||
seq2  ATTTATTTGTAAGTATGCTAGAGTATGCTT  330

seq1: chr17_51157735_51158772
seq2: B6Ng01-156O16.g_68_1110

seq1  GAATTCAAGACTTAACTCTAAGATAAGAAATTCCCAGATTTGTTGCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACTTAACTCTAAGATAAGAAATTCCCAGATTTGTTGCAGAA  50

seq1  TTTTCCCTGTCCAATCACATTAGGCAGCAGGAGGCTTGTGACTGGACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTGTCCAATCACATTAGGCAGCAGGAGGCTTGTGACTGGACAGG  100

seq1  AGAAGGAGGCAGAGCGAGAATGGAAGGAGACGGAGAGGTATGAGGGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGGCAGAGCGAGAATGGAAGGAGACGGAGAGGTATGAGGGGGAG  150

seq1  AGGGAGAACCAGAATGCAGGCTGACATTCTATCAAAATGTTAGAAGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAACCAGAATGCAGGCTGACATTCTATCAAAATGTTAGAAGAAGC  200

seq1  CGGGCAGTGGTGGCGCACACCTTTTATCCCAGGACTTGGGAGGCAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCAGTGGTGGCGCACACCTTTTATCCCAGGACTTGGGAGGCAGAAAC  250

seq1  AGGCAGATAAGTTCGAGGCCAACTTGGTCTACGGAGTGAGTTCTAGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATAAGTTCGAGGCCAACTTGGTCTACGGAGTGAGTTCTAGGACA  300

seq1  GGCAGGGCTATACAGAGAAACCATGTCTCAAAAAAAAAACCAATAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGCTATACAGAGAAACCATGTCTCAAAAAAAAAACCAATAAATAA  350

seq1  ATACATAAATAAATAAATAAAATGTTAGAATAATTGTGTTAAAGCTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAAATAAATAAATAAAATGTTAGAATAATTGTGTTAAAGCTTTAT  400

seq1  CATTATCATTTGGCTCTGAAATTACTATATTGGCCTCTTGTAAATTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCATTTGGCTCTGAAATTACTATATTGGCCTCTTGTAAATTCTGT  450

seq1  TATTATTGATACTTAAATCTGATTGGCTAATTAAGCATTAGAGTCTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTGATACTTAAATCTGATTGGCTAATTAAGCATTAGAGTCTTGAT  500

seq1  TCTACCAAGTAATTAGGTGTTGAGATGGCTAACCAAGAGTGTGTGGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCAAGTAATTAGGTGTTGAGATGGCTAACCAAGAGTGTGTGGAGCT  550

seq1  TTGGGTAAAAGCAAGAGGAACTCAGGGGACCCATCCAAGATGTGGCCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTAAAAGCAAGAGGAACTCAGGGGACCCATCCAAGATGTGGCCTAA  600

seq1  CAGGGCTGGCCAGGTGGCAGGCAGAGAGAACAAGCCAGTGAGATCAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTGGCCAGGTGGCAGGCAGAGAGAACAAGCCAGTGAGATCAACTG  650

seq1  GTGCAGGGGGCTAGCTCTAGATATTTTCTGGAATACAGATTAGTG-TTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTGCAGGGGGCTAGCTCTAGATATTTTCTGGAATACAGATTAGTGTTTTA  700

seq1  AAACAAAGTACTTTTGAGAACTATTTTTGCTTATTTTATATTATACAAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGTACTTTTGAGAACTATTTTTGCTTATTTTATATTATACAAAC  750

seq1  ATATAAATTTTCTGTCATTAACATAATTAATTGTGAGTGATTTTCTTATA  799
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  ATATAAATTTTCTGTCA-TAACATAATTTATTGTGAGTGATTTTCTTATA  799

seq1  TTCAAAATTTCAAATATTAAAGCAATATTAAGAAGGAAAAACTGAAGTGA  849
      |||||||||||||||||||||||||||||||||| |||||||||||||  
seq2  TTCAAAATTTCAAATATTAAAGCAATATTAAGAAAGAAAAACTGAAGTTG  849

seq1  ACACTACTAAAGCTG-TTCAGGAGACACGTTCCCTTCCCTAACAGATA-T  897
      ||||||||||||||| |||||||||||||||||||||| ||||||||| |
seq2  ACACTACTAAAGCTGTTTCAGGAGACACGTTCCCTTCCTTAACAGATATT  899

seq1  AAACAATTTTAA-TCATATTTACA-CAAT-AGTAAATAGGACATG-TAAT  943
      ||||| |||||| ||||||||||| |||| |||||||||||| || || |
seq2  AAACATTTTTAATTCATATTTACACCAATAAGTAAATAGGACTTGTTATT  949

seq1  GTCAACCATG-AAAAATAACAAAAGAATTTGGTATTTCTGTACATTTTTG  992
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  GTCAACCATGAAAAAATAACAAAAGAATTTGGTA-TTCTGTACATTTTTG  998

seq1  CACGCTTTCCTTTCTG-ATTTTCCATATGTCTTCCACCACTTTATAA  1038
      | ||  || ||||||| |||||||||||| |||||||||||||||||
seq2  C-CGTCTTTCTTTCTGAATTTTCCATATG-CTTCCACCACTTTATAA  1043