BAC Information

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BAC

Clone NameB6Ng01-158P01
Chromosome17 (Build37)
Map Location 70,651,600 - 70,787,134
singlet/doubletdoublet
Overlap geneLOC623112, LOC623143, Dlgap1
Upstream geneZfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535, LOC100043630
Downstream geneTgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644, Smchd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158P01.bB6Ng01-158P01.g
ACCDH952751DH952752
length1,1361,131
definitionDH952751|Mus musculus domesticus DNA, BAC clone: B6Ng01-158P01, 5' end.DH952752|Mus musculus domesticus DNA, BAC clone: B6Ng01-158P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,785,978 - 70,787,134)(70,651,600 - 70,652,746)
sequence
gaattcatcgcctgttaggacaaggttcgttcccaatggcgtttacctac
tgttctaaccattgtgctcccagctccctcaccacaggacccagttccca
tcaacagacactgtgaattaacacttagacgattccctccagacccagga
tggctcacctgggccaggccggcctcgtttgtgctctcatactgactagt
tattggctactgtgttgttgttgttacaataactgtatcagttatctcac
agctgtctgagagtgttagctctgacaacaagagcacctaggacgttact
gttccttgtctgtgaaaaacaacagcttggcttccagtctggctgccaga
gtgttctctacagaagattgctgttaagtagaaacccggacccctaccag
ccgagctttagcttagcatctgcctactccttcaagcccacactgtgttt
ttataggaacagttttggaaataggtttctctgctgaaaaaaaaacaaca
acaacaaaaaaaattggaaaaatacagacttaaatgagtgctaatctttc
actttattctaaaagcataaagcccaattataaccataatcataaaaaaa
ggaatgtataggacaatatcaaatacattctattgaccctactccaagct
aggcattgtttaagtgctttactagatacgtcatttatttacttatactt
atttatatacatatttttgaaatttttattagatattttctttatttaca
tttcaaatgttatctcttttcctggtttcccttgtgaaacccccctatcc
actccctgtcccccagcttctgtgaggctgttcccccacccacccaccct
ctatttctatgcttacttaacccacaggataacaccatgacctgatttaa
ccgtcattgcaaatgttaaaacctaaagaagagcaaagctggacgtgttt
attttcacctttcccatttcttttctagatacatttcatttataactgct
caaactaatatcatatagtgaccattgatgaatgcttgatactgtctctt
ctctgtaccctatatgagttcaagtgtatttatggaacatctgcctttac
cttggattcatgctaataagcctcagtactaagtgc
gaattctacactcactctcctgactcacacgcatcctttactggctctcg
agatagtcctttattcactcaggcagacactaaacaactctgaggcgctc
tagctttggatcacctagaaccggtaaggtaaatgaaaagaattgaattc
gtgagctatgatggctcaaagactgctttttaaccgttatcatgccaggc
ctaagtctgaatgaagacaggaaagttttccatgccatccactactcagc
ctccaacactggaaacagtgcttagcacatagtaggcacctaatattcac
tgaatggaggacatcatttctttaaacattgtgaaaaggggtacccgggt
tttacggacccagacttcctgccaggctgccctgctctacactcttctct
gctccctgcctttcttaccaaactctctacaaagtgaagagattcgactg
atgaaggaaaaactccaacctataaagtgttcaatccattgactcatcag
tgacaatcagggggatttcagagggtagctggctggaagcagagttacag
ttggtggtcgtggggctaccattgccagctggcatatacaggcttagaaa
taagactctgctctccctggcaactcaacatttggctctcatccttgaac
tagtcaccaacatgtttcaaaaactaataaggcctgttctatattttggc
aggaaaattgattatttttaagcttaaaggaaactaaatctaaaagagaa
taaaaataggaaataatgatacaaagaataggaataatgatacaaagtaa
atccaggctctgagatttttgtgtgagtctttggccagataacttaatct
ctttgtgcctcaattttggcatctgcacaatgggatggtggcaataacac
catgctaacatctgtcctgagacaaacactgggtgatgaaatagagacct
cgtctctctgtgttgcaagctggccagttctcccatctgtttcaaactgt
aaatgtcagtgatgatagcagctactcaggatgatgagctcaggtctcca
ctgtagtgtgttgggagcatgtccaaacaagtagcatcatactatagcat
cctcactgcaatgcaggctcacggggggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_70785978_70787134
seq2: B6Ng01-158P01.b_45_1180 (reverse)

seq1  GCACTTTTGCTACTGAGGCTAAATTTTTAGCATGAAACCCAAAGTTAAAG  50
      ||||  ||  |||||||||    || |||||||||| ||  ||| |||||
seq2  GCAC--TTAGTACTGAGGC----TTATTAGCATGAATCC--AAGGTAAAG  42

seq1  GCAGAATGTTCCATAAAATACACTTTGAAACTCATAATTAGGGTACAGAG  100
      |||| ||||||||| ||||||||||   ||||||||  ||||||||||||
seq2  GCAG-ATGTTCCAT-AAATACACTT--GAACTCATA--TAGGGTACAGAG  86

seq1  AAGAGACAGTATCAAGGCATTTCATTAAATGGTCACTATATGAATATTAG  150
      ||||||||||||||| ||| |||| | ||||||||||||||| |||||||
seq2  AAGAGACAGTATCAA-GCA-TTCA-TCAATGGTCACTATATG-ATATTAG  132

seq1  TTTTGAACCAGTTATAAATTGAAATGTATCTAAGAAAAGAAATGGG-AAG  199
      |||   | |||||||||| |||||||||||| |||||||||||||| |||
seq2  TTT--GAGCAGTTATAAA-TGAAATGTATCT-AGAAAAGAAATGGGAAAG  178

seq1  GTGAAAATAAACACGTCCAGCTTTGCTCTTCTTTAGGTTTTAACATTTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATAAACACGTCCAGCTTTGCTCTTCTTTAGGTTTTAACATTTGC  228

seq1  AATGACGGTTAAATCAGGTCATGGTGTTATCCTGTGGGTTAAGTAAGCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACGGTTAAATCAGGTCATGGTGTTATCCTGTGGGTTAAGTAAGCAT  278

seq1  AGAAATAGAGGGTGGGTGGGTGGGGGAACAGCCTCACAGAAGCTGGGGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGAGGGTGGGTGGGTGGGGGAACAGCCTCACAGAAGCTGGGGGA  328

seq1  CAGGGAGTGGATAGGGGGGTTTCACAAGGGAAACCAGGAAAAGAGATAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGTGGATAGGGGGGTTTCACAAGGGAAACCAGGAAAAGAGATAAC  378

seq1  ATTTGAAATGTAAATAAAGAAAATATCTAATAAAAATTTCAAAAATATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAATGTAAATAAAGAAAATATCTAATAAAAATTTCAAAAATATGT  428

seq1  ATATAAATAAGTATAAGTAAATAAATGACGTATCTAGTAAAGCACTTAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATAAGTATAAGTAAATAAATGACGTATCTAGTAAAGCACTTAAA  478

seq1  CAATGCCTAGCTTGGAGTAGGGTCAATAGAATGTATTTGATATTGTCCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCTAGCTTGGAGTAGGGTCAATAGAATGTATTTGATATTGTCCTA  528

seq1  TACATTCCTTTTTTTATGATTATGGTTATAATTGGGCTTTATGCTTTTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCCTTTTTTTATGATTATGGTTATAATTGGGCTTTATGCTTTTAG  578

seq1  AATAAAGTGAAAGATTAGCACTCATTTAAGTCTGTATTTTTCCAATTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGTGAAAGATTAGCACTCATTTAAGTCTGTATTTTTCCAATTTTT  628

seq1  TTTGTTGTTGTTGTTTTTTTTTCAGCAGAGAAACCTATTTCCAAAACTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTTGTTGTTTTTTTTTCAGCAGAGAAACCTATTTCCAAAACTGT  678

seq1  TCCTATAAAAACACAGTGTGGGCTTGAAGGAGTAGGCAGATGCTAAGCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATAAAAACACAGTGTGGGCTTGAAGGAGTAGGCAGATGCTAAGCTA  728

seq1  AAGCTCGGCTGGTAGGGGTCCGGGTTTCTACTTAACAGCAATCTTCTGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCGGCTGGTAGGGGTCCGGGTTTCTACTTAACAGCAATCTTCTGTA  778

seq1  GAGAACACTCTGGCAGCCAGACTGGAAGCCAAGCTGTTGTTTTTCACAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACACTCTGGCAGCCAGACTGGAAGCCAAGCTGTTGTTTTTCACAGA  828

seq1  CAAGGAACAGTAACGTCCTAGGTGCTCTTGTTGTCAGAGCTAACACTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACAGTAACGTCCTAGGTGCTCTTGTTGTCAGAGCTAACACTCTC  878

seq1  AGACAGCTGTGAGATAACTGATACAGTTATTGTAACAACAACAACACAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTGTGAGATAACTGATACAGTTATTGTAACAACAACAACACAGT  928

seq1  AGCCAATAACTAGTCAGTATGAGAGCACAAACGAGGCCGGCCTGGCCCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATAACTAGTCAGTATGAGAGCACAAACGAGGCCGGCCTGGCCCAG  978

seq1  GTGAGCCATCCTGGGTCTGGAGGGAATCGTCTAAGTGTTAATTCACAGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCATCCTGGGTCTGGAGGGAATCGTCTAAGTGTTAATTCACAGTG  1028

seq1  TCTGTTGATGGGAACTGGGTCCTGTGGTGAGGGAGCTGGGAGCACAATGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGATGGGAACTGGGTCCTGTGGTGAGGGAGCTGGGAGCACAATGG  1078

seq1  TTAGAACAGTAGGTAAACGCCATTGGGAACGAACCTTGTCCTAACAGGCG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACAGTAGGTAAACGCCATTGGGAACGAACCTTGTCCTAACAGGCG  1128

seq1  ATGAATTC  1157
      ||||||||
seq2  ATGAATTC  1136

seq1: chr17_70651600_70652746
seq2: B6Ng01-158P01.g_64_1194

seq1  GAATTCTACACTCACTCTCCTGACTCACACGCATCCTTTACTGGCTCTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACTCACTCTCCTGACTCACACGCATCCTTTACTGGCTCTCG  50

seq1  AGATAGTCCTTTATTCACTCAGGCAGACACTAAACAACTCTGAGGCGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTCCTTTATTCACTCAGGCAGACACTAAACAACTCTGAGGCGCTC  100

seq1  TAGCTTTGGATCACCTAGAACCGGTAAGGTAAATGAAAAGAATTGAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTGGATCACCTAGAACCGGTAAGGTAAATGAAAAGAATTGAATTC  150

seq1  GTGAGCTATGATGGCTCAAAGACTGCTTTTTAACCGTTATCATGCCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTATGATGGCTCAAAGACTGCTTTTTAACCGTTATCATGCCAGGC  200

seq1  CTAAGTCTGAATGAAGACAGGAAAGTTTTCCATGCCATCCACTACTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCTGAATGAAGACAGGAAAGTTTTCCATGCCATCCACTACTCAGC  250

seq1  CTCCAACACTGGAAACAGTGCTTAGCACATAGTAGGCACCTAATATTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACACTGGAAACAGTGCTTAGCACATAGTAGGCACCTAATATTCAC  300

seq1  TGAATGGAGGACATCATTTCTTTAAACATTGTGAAAAGGGGTACCCGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGAGGACATCATTTCTTTAAACATTGTGAAAAGGGGTACCCGGGT  350

seq1  TTTACGGACCCAGACTTCCTGCCAGGCTGCCCTGCTCTACACTCTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGGACCCAGACTTCCTGCCAGGCTGCCCTGCTCTACACTCTTCTCT  400

seq1  GCTCCCTGCCTTTCTTACCAAACTCTCTACAAAGTGAAGAGATTCGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTGCCTTTCTTACCAAACTCTCTACAAAGTGAAGAGATTCGACTG  450

seq1  ATGAAGGAAAAACTCCAACCTATAAAGTGTTCAATCCATTGACTCATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAAAAACTCCAACCTATAAAGTGTTCAATCCATTGACTCATCAG  500

seq1  TGACAATCAGGGGGATTTCAGAGGGTAGCTGGCTGGAAGCAGAGTTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATCAGGGGGATTTCAGAGGGTAGCTGGCTGGAAGCAGAGTTACAG  550

seq1  TTGGTGGTCGTGGGGCTACCATTGCCAGCTGGCATATACAGGCTTAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGTCGTGGGGCTACCATTGCCAGCTGGCATATACAGGCTTAGAAA  600

seq1  TAAGACTCTGCTCTCCCTGGCAACTCAACATTTGGCTCTCATCCTTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTCTGCTCTCCCTGGCAACTCAACATTTGGCTCTCATCCTTGAAC  650

seq1  TAGTCACCAACATGTTTCAAAAACTAATAAGGCCTGTTCTATATTTTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACCAACATGTTTCAAAAACTAATAAGGCCTGTTCTATATTTTGGC  700

seq1  AGGAAAATTGATTATTTTTAAGCTTAAAGGAAACTAAATCTAAAAGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATTGATTATTTTTAAGCTTAAAGGAAACTAAATCTAAAAGAGAA  750

seq1  TAAAAATAGGAAATAATGATACAAAGAATAGGAATAATGATACAAAGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAGGAAATAATGATACAAAGAATAGGAATAATGATACAAAGTAA  800

seq1  ATCCAGGCTCTGAGATTTTTGTGTGAGTCTTTGGCCAGATAACTTAATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGCTCTGAGATTTTTGTGTGAGTCTTTGGCCAGATAACTTAATCT  850

seq1  CTTTGTGCCTCAATTTTGGCATCTGCACAATGGGATGGTGGCAATAACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGCCTCAATTTTGGCATCTGCACAATGGGATGGTGGCAATAACAC  900

seq1  CATGCTAACATCTGTCCTGAGACAAACACTGGGTGATGAAATAGAGACCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAACATCTGTCCTGAGACAAACACTGGGTGATGAAATAGAGACCT  950

seq1  CGTCTCTCTGTGTTGCAAGCTGGCCAGTTTCTTCCCATCTGTTTCAAACT  1000
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  CGTCTCTCTGTGTTGCAAGCTGGCCAGTT--CTCCCATCTGTTTCAAACT  998

seq1  GTAAAATGTCAGTGATGATAGCAGCTACCTCAGGGGAATGATGAGCCCAA  1050
      || |||||||||||||||||||||||| ||||||   ||||||||| | |
seq2  GT-AAATGTCAGTGATGATAGCAGCTA-CTCAGG---ATGATGAGCTC-A  1042

seq1  GGTCTCCACTGTAGTGTGTTGGGAGCAGTGTTCAAAACATAGTAGCATTC  1100
      ||||||||||||||||||||||||||| || || ||||| ||||||||  
seq2  GGTCTCCACTGTAGTGTGTTGGGAGCA-TG-TCCAAACA-AGTAGCAT--  1087

seq1  CATACTATAGCCATCCTTACTGCATATGCCAGGCTCACGGGGAGAAG  1147
      |||||||||| |||||| |||||| ||| ||||||||||||| ||||
seq2  CATACTATAG-CATCCTCACTGCA-ATG-CAGGCTCACGGGGGGAAG  1131