BAC Information

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BAC

Clone NameB6Ng01-163E07
Chromosome17 (Build37)
Map Location 59,956,497 - 59,957,749
singlet/doubletsinglet
Overlap genenone
Upstream gene2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537, LOC100043542
Downstream geneLOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163E07.bB6Ng01-163E07.g
ACCDH955899DH955900
length1,2121,232
definitionDH955899|Mus musculus domesticus DNA, BAC clone: B6Ng01-163E07, 5' end.DH955900|Mus musculus domesticus DNA, BAC clone: B6Ng01-163E07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccgagaatgatatgccattgtcacacctctttgattctaaagtg
aactccatggacagaaacagtgccatattaaatactagaaagataaagaa
ggagtcctataaatccatggatggtagtttttaaagaagcattatttaga
gaagaggtaaatccacaggtataggtatgtataccaataagaaaggtatt
ccttcctgtgaaagaaaaggtccaatggcttcaactatgacaatatagtt
agttaaccacactggacattaagaccagatcagggaattattgtggatca
gatagctagcatatcatccattcagtggcatttatagccaggtcagcctt
gttgaattggagtgtctatattgttaagcctatgcatgacttccatcatt
accatcatgctcacatttttcatgaaacttggctgtaaatatgttttttc
acgtgattcaattgtcatcttggaggcttatggctgaataaactctccct
gtctaactagctctttcttccttccttccttccttcctttcttcttcttc
ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt
cttcttcttcttcttctctctctctctctctctctctctctctccctctt
tctgtttgagtatttctttatttacatttcaaatgttatcccctttcctg
gttttcctcccctccccctgcttctatgaaagtgttcaaagtgtggggca
gagaccttaggaaagaccatccacagactggcccatctggggatctatcc
catatacagttaccaaacccagacactattgtgaagtgcttgctaacagg
aacctgatatagctgacaagctctgccagagcctgacaaatacagagact
gatgtccatggccaacaattggactgagtacagggttcccaaaggaggag
ttagagaaggatgaggagctggaggtggattgcagcccataaggagaaca
aaaatatcaaccaaccgaccctcccagggctcctagggaacttaaccatc
aacaaatatacttatgggagggacccctgtgctctcagctacatgttgta
caaaggaggtcccttcttggcatatataggggaagagagtcccttggctc
ttggaaggtctctatgctcccaagtgaaggctatatctagagctggagct
ggagtggtgtcg
gaattcaatcctggtaagcaaaccacttcaacaatggtaccctcaagaat
ggtaccctcacatccaagaatgcgtatgggcagcacaaaattgactttgt
gtgtttagaaaaacaaagctaatgcaaaattatgagggttgggaaagtaa
aacagattaggtaggagttgaggtgaggtgaacatggcagtatatagtat
gaaattataaaaaagtatgaaaatgaaaaattactgaataaataaataag
caattttgcattttaaaaacatttttggcttctttgataaccaatttcta
tcacaatgtattcttttgattttactggtttgaggctaatcccacagagt
tacttatgattgaacattttaaacacaatgtatggtgaataaagaatagc
ttctctttaacttctcattttatcatattttttatttatttttcatcagt
agatgtagaatgtgataaattttgttaactcttccctatgaagtgatgtt
tttttctgtattcatgttctgtcttttttttttaaattatatactttttg
gactgctttgtctttaaataattacttattttaatgctgatgaaaattta
ttaaattcatttcaaatacaaacacacctacaaattattctgtaatacta
tgttagccatgccacacaagtatgatttcttatgacgttgttttcatcta
gcataaaacatatcaaaatattatccataagatttctcaatataaattat
caatttaaaaatgtcagtaatccaaatcagtgtggttgctgaaaataaaa
ttttaacttggattcatgctgataataaaataacaatgctatccacttac
aaatatttacaatgtgttcttgccataaagaatatggagtatgttactaa
gatttcaatgttcatgagtacatgtgaaattctaggctgtgcaatgttag
acagatcacacagtgttatttcttctgtagatactgatattagttcactt
ttcaagtgatgaggaggttttgaattagccatagctaccgatctaattcc
caaattagtgtaactaattcttattttgggccgagaagaaaaccagatca
tagaatgaggatataggaatcatcacatctaataacggatatgtaactgg
atttccttatgaactcggtttctcctggaatcttcagatctgactttaat
ggccgatggaatactaacttcacttcaggact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_59956497_59957749
seq2: B6Ng01-163E07.g_68_1299

seq1  GAATTCAATCCTGGTAAGCAAACCACTTCAACAATGGTACCCTCAAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCTGGTAAGCAAACCACTTCAACAATGGTACCCTCAAGAAT  50

seq1  GGTACCCTCACATCCAAGAATGCGTATGGGCAGCACAAAATTGACTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCTCACATCCAAGAATGCGTATGGGCAGCACAAAATTGACTTTGT  100

seq1  GTGTTTAGAAAAACAAAGCTAATGCAAAATTATGAGGGTTGGGAAAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAGAAAAACAAAGCTAATGCAAAATTATGAGGGTTGGGAAAGTAA  150

seq1  AACAGATTAGGTAGGAGTTGAGGTGAGGTGAACATGGCAGTATATAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATTAGGTAGGAGTTGAGGTGAGGTGAACATGGCAGTATATAGTAT  200

seq1  GAAATTATAAAAAAGTATGAAAATGAAAAATTACTGAATAAATAAATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATAAAAAAGTATGAAAATGAAAAATTACTGAATAAATAAATAAG  250

seq1  CAATTTTGCATTTTAAAAACATTTTTGGCTTCTTTGATAACCAATTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGCATTTTAAAAACATTTTTGGCTTCTTTGATAACCAATTTCTA  300

seq1  TCACAATGTATTCTTTTGATTTTACTGGTTTGAGGCTAATCCCACAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGTATTCTTTTGATTTTACTGGTTTGAGGCTAATCCCACAGAGT  350

seq1  TACTTATGATTGAACATTTTAAACACAATGTATGGTGAATAAAGAATAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATGATTGAACATTTTAAACACAATGTATGGTGAATAAAGAATAGC  400

seq1  TTCTCTTTAACTTCTCATTTTATCATATTTTTTATTTATTTTTCATCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTAACTTCTCATTTTATCATATTTTTTATTTATTTTTCATCAGT  450

seq1  AGATGTAGAATGTGATAAATTTTGTTAACTCTTCCCTATGAAGTGATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAGAATGTGATAAATTTTGTTAACTCTTCCCTATGAAGTGATGTT  500

seq1  TTTTTCTGTATTCATGTTCTGTCTTTTTTTTTTAAATTATATACTTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGTATTCATGTTCTGTCTTTTTTTTTTAAATTATATACTTTTTG  550

seq1  GACTGCTTTGTCTTTAAATAATTACTTATTTTAATGCTGATGAAAATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTTTGTCTTTAAATAATTACTTATTTTAATGCTGATGAAAATTTA  600

seq1  TTAAATTCATTTCAAATACAAACACACCTACAAATTATTCTGTAATACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTCATTTCAAATACAAACACACCTACAAATTATTCTGTAATACTA  650

seq1  TGTTAGCCATGCCACACAAGTATGATTTCTTATGACGTTGTTTTCATCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCCATGCCACACAAGTATGATTTCTTATGACGTTGTTTTCATCTA  700

seq1  GCATAAAACATATCAAAATATTATCCATAAGATTTCTCAATATAAATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAACATATCAAAATATTATCCATAAGATTTCTCAATATAAATTAT  750

seq1  CAATTTAAAAATGTCAGTAATCCAAATCAGTGTGGTTGCTGAAAATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAAAAATGTCAGTAATCCAAATCAGTGTGGTTGCTGAAAATAAAA  800

seq1  TTTTAACTTGGATTCATGCTGATAATAAAAATAACAATGCTATCCACTTA  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTTAACTTGGATTCATGCTGATAAT-AAAATAACAATGCTATCCACTTA  849

seq1  CAAATATTTACAATGTGTTCTTGCCAATAAAGAATATGGAGTATGTTACT  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAAATATTTACAATGTGTTCTTGCC-ATAAAGAATATGGAGTATGTTACT  898

seq1  AAGATTTTCAAATGTTCATGAGTACAATGTGAAATTCTAGGCTGTGCAAA  950
      |||||||   ||||||||||||||| ||||||||||||||||||||| ||
seq2  AAGATTT--CAATGTTCATGAGTAC-ATGTGAAATTCTAGGCTGTGC-AA  944

seq1  TGTTAGACAGATCACACAGGTGTTATTTCTTCTGTAAGATACTGAATATT  1000
      |||||||||||||||||| |||||||||||||||| |||||||| |||||
seq2  TGTTAGACAGATCACACA-GTGTTATTTCTTCTGT-AGATACTG-ATATT  991

seq1  AGTTCACTTTTTCAAGTGATGAGGAGGTTTTGAATTAAGCCATATAGCTA  1050
      ||||||| |||||||||||||||||||||||||||| ||||  |||||||
seq2  AGTTCAC-TTTTCAAGTGATGAGGAGGTTTTGAATT-AGCC--ATAGCTA  1037

seq1  CTGATCTTTATTTTCTAATATTAGTTGTAATATATTTCTTATTTATGGTC  1100
      | ||||  || || | || ||||| |||||  || |||||||||  || |
seq2  CCGATC--TAATTCCCAA-ATTAG-TGTAA-CTAATTCTTATTTTGGGCC  1082

seq1  ATGAGAAGAAAAACAAGATTCATAGAATGAAGGAAATTATAGAATT----  1146
        |||||| ||||| ||| |||||||||| ||||   ||||| | |    
seq2  --GAGAAG-AAAACCAGA-TCATAGAATG-AGGA---TATAGGAATCATC  1124

seq1  -CAACTATT-----ACAAATAACTGTATTTCTCTTTATGTACT---GTTC  1187
       || ||| |     | |  |||||| |||  || ||||| |||    |||
seq2  ACATCTAATAACGGATATGTAACTGGATT--TCCTTATGAACTCGGTTTC  1172

seq1  TC--TGACTCACAAAATCACTAGACTTTTTTAGATAGCTTGAATACTCTA  1235
      ||   || ||   | |||    ||||||  | |   | | |||||  |||
seq2  TCCTGGAATCTTCAGATC---TGACTTTAAT-GGCCGATGGAATA--CTA  1216

seq1  ACTTCCCACTTCAGGACT  1253
      ||||  ||||||||||||
seq2  ACTT--CACTTCAGGACT  1232