BAC Information

Click to search

BAC

Clone NameB6Ng01-163J21
Chromosome17 (Build37)
Map Location 63,771,861 - 63,924,548
singlet/doubletdoublet
Overlap geneFbxl17, Ppia-ps17_1026.1
Upstream geneEfna5
Downstream geneLOC638867, LOC668677, A930002H24Rik, Fert2, LOC669778, Pja2, LOC100043582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163J21.bB6Ng01-163J21.g
ACCDH956158DH956159
length7211,193
definitionDH956158|Mus musculus domesticus DNA, BAC clone: B6Ng01-163J21, 5' end.DH956159|Mus musculus domesticus DNA, BAC clone: B6Ng01-163J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,771,861 - 63,772,581)(63,923,349 - 63,924,548)
sequence
gaattcataatcagcacaacgaaagctaaagaaatcaagaaaaaattaat
tcttctgcccacaaacaaaaacaagtcaccatggggcaaaaaacacagca
gagtacaccataaaattctttggcagcctggcagtggtagtgcaggcttt
agtcccagcacttggaaggcagaggcgggaggatctctttgagttcaagg
ccagcctcgtccacagagttacagctcagccatactgagaccttgttttg
ggagggtggggagacatctgcagcaatgtgtgacatcatcagccagcatc
tactaatgccttaaaactatgacaaaggaaaagggaacagtagtgggagc
cgagaggaactgctgagtcactctgcctcaggttcataggatttgcagac
aggagctgctggtgtgaggggggctgtggacagtcgggaactcagagtgg
gcagcactgcagtggagacagaacatacagaggcactgctctcacttcag
gctaacatactcagccctccaaaaccaccaacggctaccactttaaataa
aatgtaaaattaactgaggttgcatatttaaagtgaatcctgattttaaa
acttaataatgagaataaaatgaaagttgcataacatgcaactcactatt
gataccattcatactggcaaaaccaggaaaccatgaacatgacaggtggg
gagttggtggagagggggtag
gaattcagcgtgcctcacaccactgggatacacatccagttctatcatgg
ggttttgaatggcagaaggacggatatagagtgcacgctactctgggaga
caacattgtcagcttttgtattgacagacacaagacttgggtgtactctt
tagaggtcaactttaacatctcaaattagcagtgacataaagacaggatc
gctgaaatgtcaatgattaaaaatcttttgtaaagagctatgttttttga
ggcagctgaacaaaatcgaagagcaaattacagatgccaaattgggaaaa
aaatatattttgtacagtttagagaaagtataatataaaatggacatcga
attaaaataatgatcaaattggctacaatagaaagaaaaactatgaaaca
aaggtaccatagccaggaaagatatttcctagaaatatgataatcataga
ctaattcccttaatatatgtgctagttagactgcttcaacttgacagaaa
ttaaagccacccaggaatcagattggcttgtagacttcttccttggttgt
cgatgggtgtgggaggtgcccagcagactacagtcagtaccatcctggag
tagctggtcttgaataagaacataagatgagcaagccatggagaacaggc
cagttagctgtggtcctccatcctccacagcgtctgtaagtctctgcctc
caggtgcctgccgagtccctgttgacgttccttggtggtggactgtaact
ataagcccaataaacccttcccctccccaagatgttttgatcagtgtttt
atcacagcaaaagaacatgaactaggacccacctgaaacatttactctgt
gaaagattgtgttatgattataggacggagaagaatacatgaacctcaca
cggggacaagcacttttattctgaatacaaatctcaaaagttaaggagta
ggagagatatgagaaggaaggagaaaagtaaatatacatttaaaatgtat
atgaatgaagagttgctaccaagaacggaggtaagacagcaagcaagcag
aagtgaagagacttgtagcactgtttgggcggtacagaaccgcaaagaaa
gcccctaggtgtgctccacacaaagaatgctgaacagcgtgggaaaaata
atggtgcagccttatggtccagcacagggaacgacacaccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_63771861_63772581
seq2: B6Ng01-163J21.b_46_766

seq1  GAATTCATAATCAGCACAACGAAAGCTAAAGAAATCAAGAAAAAATTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATCAGCACAACGAAAGCTAAAGAAATCAAGAAAAAATTAAT  50

seq1  TCTTCTGCCCACAAACAAAAACAAGTCACCATGGGGCAAAAAACACAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCCCACAAACAAAAACAAGTCACCATGGGGCAAAAAACACAGCA  100

seq1  GAGTACACCATAAAATTCTTTGGCAGCCTGGCAGTGGTAGTGCAGGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACCATAAAATTCTTTGGCAGCCTGGCAGTGGTAGTGCAGGCTTT  150

seq1  AGTCCCAGCACTTGGAAGGCAGAGGCGGGAGGATCTCTTTGAGTTCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAGCACTTGGAAGGCAGAGGCGGGAGGATCTCTTTGAGTTCAAGG  200

seq1  CCAGCCTCGTCCACAGAGTTACAGCTCAGCCATACTGAGACCTTGTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCGTCCACAGAGTTACAGCTCAGCCATACTGAGACCTTGTTTTG  250

seq1  GGAGGGTGGGGAGACATCTGCAGCAATGTGTGACATCATCAGCCAGCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTGGGGAGACATCTGCAGCAATGTGTGACATCATCAGCCAGCATC  300

seq1  TACTAATGCCTTAAAACTATGACAAAGGAAAAGGGAACAGTAGTGGGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATGCCTTAAAACTATGACAAAGGAAAAGGGAACAGTAGTGGGAGC  350

seq1  CGAGAGGAACTGCTGAGTCACTCTGCCTCAGGTTCATAGGATTTGCAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGGAACTGCTGAGTCACTCTGCCTCAGGTTCATAGGATTTGCAGAC  400

seq1  AGGAGCTGCTGGTGTGAGGGGGGCTGTGGACAGTCGGGAACTCAGAGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGCTGGTGTGAGGGGGGCTGTGGACAGTCGGGAACTCAGAGTGG  450

seq1  GCAGCACTGCAGTGGAGACAGAACATACAGAGGCACTGCTCTCACTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACTGCAGTGGAGACAGAACATACAGAGGCACTGCTCTCACTTCAG  500

seq1  GCTAACATACTCAGCCCTCCAAAACCACCAACGGCTACCACTTTAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACATACTCAGCCCTCCAAAACCACCAACGGCTACCACTTTAAATAA  550

seq1  AATGTAAAATTAACTGAGGTTGCATATTTAAAGTGAATCCTGATTTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAATTAACTGAGGTTGCATATTTAAAGTGAATCCTGATTTTAAA  600

seq1  ACTTAATAATGAGAATAAAATGAAAGTTGCATAACATGCAACTCACTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATAATGAGAATAAAATGAAAGTTGCATAACATGCAACTCACTATT  650

seq1  GATACCATTCATACTGGCAAAACCAGGAAACCATGAACATGACAGGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCATTCATACTGGCAAAACCAGGAAACCATGAACATGACAGGTGGG  700

seq1  GAGTTGGTGGAGAGGGGGTAG  721
      |||||||||||||||||||||
seq2  GAGTTGGTGGAGAGGGGGTAG  721

seq1: chr17_63923349_63924548
seq2: B6Ng01-163J21.g_67_1259 (reverse)

seq1  CATGGTGTGTCGTCTCCTTGTGCTGGGACCACTGAGGGCTG--CCATTAT  48
      ||||||||||||| ||| |||||| ||||||   | |||||  |||||||
seq2  CATGGTGTGTCGT-TCCCTGTGCT-GGACCA--TAAGGCTGCACCATTAT  46

seq1  TCTTTCCCACAGCTGTTCTAGCAATC-TTGTGGTGAGCACA-CTAGGGCT  96
      | |||||||| ||||||| |||| || |||||  ||||||| ||||||  
seq2  T-TTTCCCAC-GCTGTTC-AGCATTCTTTGTGTGGAGCACACCTAGGGGC  93

seq1  TTACTTTGCGTTTCTGTAACGGCC-AACAGTGCTAACAGTCTC-TCAC-T  143
      || ||||||| ||||||| || || ||||||||||  |||||| |||| |
seq2  TTTCTTTGCGGTTCTGTACCGCCCAAACAGTGCTACAAGTCTCTTCACTT  143

seq1  CTGCTTGCTTGCTGGTCTTACCT-CGTTCTTGGTAAGCAACTCTTCATTT  192
      ||||||||||||| ||||||||| |||||||||| |||||||||||| ||
seq2  CTGCTTGCTTGCT-GTCTTACCTCCGTTCTTGGT-AGCAACTCTTCA-TT  190

seq1  CATTATACATTTTTAATTGTATATTTACTTTTTCTCCTTCCTTCTCCTTA  242
      || |||||| |||||| ||||||||||| |||||||||||||||| | ||
seq2  CA-TATACA-TTTTAAATGTATATTTAC-TTTTCTCCTTCCTTCT-CATA  236

seq1  TCTCTTCCTACTCCTTAACTTTTGAGATTTGTATTCAGAATAAAAGTGCT  292
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTC-TCCTACTCCTTAACTTTTGAGATTTGTATTCAGAATAAAAGTGCT  285

seq1  TGTCCCCGTGTGAGGTTCATGTATTCTTCTCCGTCCTATAATCATAACAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCGTGTGAGGTTCATGTATTCTTCTCCGTCCTATAATCATAACAC  335

seq1  AATCTTTCACAGAGTAAATGTTTCAGGTGGGTCCTAGTTCATGTTCTTTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCACAGAGTAAATGTTTCAGGTGGGTCCTAGTTCATGTTCTTTT  385

seq1  GCTGTGATAAAACACTGATCAAAACATCTTGGGGAGGGGAAGGGTTTATT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGATAAAACACTGATCAAAACATCTTGGGGAGGGGAAGGGTTTATT  435

seq1  GGGCTTATAGTTACAGTCCACCACCAAGGAACGTCAACAGGGACTCGGCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTATAGTTACAGTCCACCACCAAGGAACGTCAACAGGGACTCGGCA  485

seq1  GGCACCTGGAGGCAGAGACTTACAGACGCTGTGGAGGATGGAGGACCACA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTGGAGGCAGAGACTTACAGACGCTGTGGAGGATGGAGGACCACA  535

seq1  GCTAACTGGCCTGTTCTCCATGGCTTGCTCATCTTATGTTCTTATTCAAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTGGCCTGTTCTCCATGGCTTGCTCATCTTATGTTCTTATTCAAG  585

seq1  ACCAGCTACTCCAGGATGGTACTGACTGTAGTCTGCTGGGCACCTCCCAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTACTCCAGGATGGTACTGACTGTAGTCTGCTGGGCACCTCCCAC  635

seq1  ACCCATCGACAACCAAGGAAGAAGTCTACAAGCCAATCTGATTCCTGGGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCGACAACCAAGGAAGAAGTCTACAAGCCAATCTGATTCCTGGGT  685

seq1  GGCTTTAATTTCTGTCAAGTTGAAGCAGTCTAACTAGCACATATATTAAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTAATTTCTGTCAAGTTGAAGCAGTCTAACTAGCACATATATTAAG  735

seq1  GGAATTAGTCTATGATTATCATATTTCTAGGAAATATCTTTCCTGGCTAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTAGTCTATGATTATCATATTTCTAGGAAATATCTTTCCTGGCTAT  785

seq1  GGTACCTTTGTTTCATAGTTTTTCTTTCTATTGTAGCCAATTTGATCATT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTTTGTTTCATAGTTTTTCTTTCTATTGTAGCCAATTTGATCATT  835

seq1  ATTTTAATTCGATGTCCATTTTATATTATACTTTCTCTAAACTGTACAAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTCGATGTCCATTTTATATTATACTTTCTCTAAACTGTACAAA  885

seq1  ATATATTTTTTTCCCAATTTGGCATCTGTAATTTGCTCTTCGATTTTGTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTTTTTCCCAATTTGGCATCTGTAATTTGCTCTTCGATTTTGTT  935

seq1  CAGCTGCCTCAAAAAACATAGCTCTTTACAAAAGATTTTTAATCATTGAC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCCTCAAAAAACATAGCTCTTTACAAAAGATTTTTAATCATTGAC  985

seq1  ATTTCAGCGATCCTGTCTTTATGTCACTGCTAATTTGAGATGTTAAAGTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGCGATCCTGTCTTTATGTCACTGCTAATTTGAGATGTTAAAGTT  1035

seq1  GACCTCTAAAGAGTACACCCAAGTCTTGTGTCTGTCAATACAAAAGCTGA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTAAAGAGTACACCCAAGTCTTGTGTCTGTCAATACAAAAGCTGA  1085

seq1  CAATGTTGTCTCCCAGAGTAGCGTGCACTCTATATCCGTCCTTCTGCCAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTGTCTCCCAGAGTAGCGTGCACTCTATATCCGTCCTTCTGCCAT  1135

seq1  TCAAAACCCCATGATAGAACTGGATGTGTATCCCAGTGGTGTGAGGCACG  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACCCCATGATAGAACTGGATGTGTATCCCAGTGGTGTGAGGCACG  1185

seq1  CTGAATTC  1200
      ||||||||
seq2  CTGAATTC  1193