BAC Information

Click to search

BAC

Clone NameB6Ng01-166I11
Chromosome17 (Build37)
Map Location 26,693,839 - 26,856,141
singlet/doubletdoublet
Overlap geneErgic1, Atp6v0e, A930001N09Rik
Upstream geneSox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668
Downstream geneBnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166I11.bB6Ng01-166I11.g
ACCDH958286DH958287
length813778
definitionDH958286|Mus musculus domesticus DNA, BAC clone: B6Ng01-166I11, 5' end.DH958287|Mus musculus domesticus DNA, BAC clone: B6Ng01-166I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,693,839 - 26,694,516)(26,855,365 - 26,856,141)
sequence
gaattctggctcagggtccccttagaactggagctaaagtgtgggccagg
ctgcactctgggctgtgacctgggtcagtagacttcctggagggctcctc
acctggctgtggcaggagccctctgagagaaagcatccttaaggcatggt
actgggatttccccagaaaaagaggcctgtgagcccagaagctcggaata
cccaagatacaattcgcaaaacacatgaaactcaagaagaaggaagatca
aagtgtggatactttgatccttcttagaagggggtacaaaatgcccatgg
aaggagttacagagacaaagtgtggagcagagactgaaggaatgaccatc
cagaaactgcaccacccggggatccatcccataaacaaccaccaaaccca
gacactattgcagatgccaacaagagcttgctgacaggagcctgatatag
ctgtttcctgagaggctatgccagtacctggctaatacagaagtagatgc
tcacaatcatccattggactagagggtccccaatgaaggagctagaggaa
gtacccaaggagctgaaggagtttgcagccctataggaggaacaacatta
tgaactaaccagtacccccaaagctccctgggactaaaccaccaaccaaa
gaaaacacatggtgggactcgtggctctagctgcatatgtagcaaaggat
ggcctagttggtcatcaatgggaggagaggcccttggtcctgtgaaggtt
ctatgccccagtataggggaacgccagggccaggaagtgggagtgggtgg
gttagtgagcaag
gaattcagtttactattttaagaaccactacactgccaagtgtggtgatt
cacacctttgatcccagcacttaggaggaaaaggcaggcagatatctgtg
ggttcaaggccagactagacttcacaatcagttccaggacaggaggggga
cagcacaaaaaataaaaactactacactacactacgacaattaaatagaa
tgtctccgtattcccattatccaatggatttatttagtcaccaccaccaa
ggaccttaatcagttacccttttacgccagaacttacaccaattaggtta
ttttcttcatcaaagtttgtttttcagtttgttatacaacatacaaagtg
tcaaggtgagtggagaacccaatattgctctggaagtatctatttttcta
ttcttactatactagaaattcctgagcccagtgatacttaactgtagtcc
cagcaggaaagaaatgcttgaggaccaggaattcaaaaccaactggacta
caaagtaaaacgctgactccataacaacattttgtaaaccccaaattata
ttaagcatataaaagaattttagccaaaaataatctctagtgtattatat
ttgccattctttttttttaagatttgtttatttatttattacatgtaagt
acactgtagctgtcctcagacactccagaagagggagtcagatctcgtta
tggatggttgtgagccactcctgaccttctgaagagcatttcgggtgctc
ttaccactggagccatctcaccacccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_26693839_26694516
seq2: B6Ng01-166I11.b_45_722

seq1  GAATTCTGGCTCAGGGTCCCCTTAGAACTGGAGCTAAAGTGTGGGCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCTCAGGGTCCCCTTAGAACTGGAGCTAAAGTGTGGGCCAGG  50

seq1  CTGCACTCTGGGCTGTGACCTGGGTCAGTAGACTTCCTGGAGGGCTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTCTGGGCTGTGACCTGGGTCAGTAGACTTCCTGGAGGGCTCCTC  100

seq1  ACCTGGCTGTGGCAGGAGCCCTCTGAGAGAAAGCATCCTTAAGGCATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCTGTGGCAGGAGCCCTCTGAGAGAAAGCATCCTTAAGGCATGGT  150

seq1  ACTGGGATTTCCCCAGAAAAAGAGGCCTGTGAGCCCAGAAGCTCGGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGATTTCCCCAGAAAAAGAGGCCTGTGAGCCCAGAAGCTCGGAATA  200

seq1  CCCAAGATACAATTCGCAAAACACATGAAACTCAAGAAGAAGGAAGATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGATACAATTCGCAAAACACATGAAACTCAAGAAGAAGGAAGATCA  250

seq1  AAGTGTGGATACTTTGATCCTTCTTAGAAGGGGGTACAAAATGCCCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGATACTTTGATCCTTCTTAGAAGGGGGTACAAAATGCCCATGG  300

seq1  AAGGAGTTACAGAGACAAAGTGTGGAGCAGAGACTGAAGGAATGACCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTACAGAGACAAAGTGTGGAGCAGAGACTGAAGGAATGACCATC  350

seq1  CAGAAACTGCACCACCCGGGGATCCATCCCATAAACAACCACCAAACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTGCACCACCCGGGGATCCATCCCATAAACAACCACCAAACCCA  400

seq1  GACACTATTGCAGATGCCAACAAGAGCTTGCTGACAGGAGCCTGATATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTATTGCAGATGCCAACAAGAGCTTGCTGACAGGAGCCTGATATAG  450

seq1  CTGTTTCCTGAGAGGCTATGCCAGTACCTGGCTAATACAGAAGTAGATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCTGAGAGGCTATGCCAGTACCTGGCTAATACAGAAGTAGATGC  500

seq1  TCACAATCATCCATTGGACTAGAGGGTCCCCAATGAAGGAGCTAGAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATCATCCATTGGACTAGAGGGTCCCCAATGAAGGAGCTAGAGGAA  550

seq1  GTACCCAAGGAGCTGAAGGAGTTTGCAGCCCTATAGGAGGAACAACATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCAAGGAGCTGAAGGAGTTTGCAGCCCTATAGGAGGAACAACATTA  600

seq1  TGAACTAACCAGTACCCCCAAAGCTCCCTGGGACTAAACCACCAACCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAACCAGTACCCCCAAAGCTCCCTGGGACTAAACCACCAACCAAA  650

seq1  GAAAACACATGGTGGGACTCGTGGCTCT  678
      ||||||||||||||||||||||||||||
seq2  GAAAACACATGGTGGGACTCGTGGCTCT  678

seq1: chr17_26855365_26856141
seq2: B6Ng01-166I11.g_66_843 (reverse)

seq1  AGGGCTGGTGAGATGGCT-CAGTGGGTAAGAGCACCCG-ACTGCTCTTCA  48
      |||| ||||||||||||| |||| |||||||||||||| | |||||||||
seq2  AGGGGTGGTGAGATGGCTCCAGT-GGTAAGAGCACCCGAAATGCTCTTCA  49

seq1  GAAGGTCAGGAGTGGCTCACAACCATCCATAACGAGATCTGACTCCCTCT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCAGGAGTGGCTCACAACCATCCATAACGAGATCTGACTCCCTCT  99

seq1  TCTGGAGTGTCTGAGGACAGCTACAGTGTACTTACATGTAATAAATAAAT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTGTCTGAGGACAGCTACAGTGTACTTACATGTAATAAATAAAT  149

seq1  AAACAAATCTTAAAAAAAAAGAATGGCAAATATAATACACTAGAGATTAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATCTTAAAAAAAAAGAATGGCAAATATAATACACTAGAGATTAT  199

seq1  TTTTGGCTAAAATTCTTTTATATGCTTAATATAATTTGGGGTTTACAAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCTAAAATTCTTTTATATGCTTAATATAATTTGGGGTTTACAAAA  249

seq1  TGTTGTTATGGAGTCAGCGTTTTACTTTGTAGTCCAGTTGGTTTTGAATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTATGGAGTCAGCGTTTTACTTTGTAGTCCAGTTGGTTTTGAATT  299

seq1  CCTGGTCCTCAAGCATTTCTTTCCTGCTGGGACTACAGTTAAGTATCACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCTCAAGCATTTCTTTCCTGCTGGGACTACAGTTAAGTATCACT  349

seq1  GGGCTCAGGAATTTCTAGTATAGTAAGAATAGAAAAATAGATACTTCCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAGGAATTTCTAGTATAGTAAGAATAGAAAAATAGATACTTCCAG  399

seq1  AGCAATATTGGGTTCTCCACTCACCTTGACACTTTGTATGTTGTATAACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATATTGGGTTCTCCACTCACCTTGACACTTTGTATGTTGTATAACA  449

seq1  AACTGAAAAACAAACTTTGATGAAGAAAATAACCTAATTGGTGTAAGTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAAACAAACTTTGATGAAGAAAATAACCTAATTGGTGTAAGTTC  499

seq1  TGGCGTAAAAGGGTAACTGATTAAGGTCCTTGGTGGTGGTGACTAAATAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTAAAAGGGTAACTGATTAAGGTCCTTGGTGGTGGTGACTAAATAA  549

seq1  ATCCATTGGATAATGGGAATACGGAGACATTCTATTTAATTGTCGTAGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTGGATAATGGGAATACGGAGACATTCTATTTAATTGTCGTAGTG  599

seq1  TAGTGTAGTAGTTTTTATTTTTTGTGCTGTCCCCCTCCTGTCCTGGAACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTAGTAGTTTTTATTTTTTGTGCTGTCCCCCTCCTGTCCTGGAACT  649

seq1  GATTGTGAAGTCTAGTCTGGCCTTGAACCCACAGATATCTGCCTGCCTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGAAGTCTAGTCTGGCCTTGAACCCACAGATATCTGCCTGCCTTT  699

seq1  TCCTCCTAAGTGCTGGGATCAAAGGTGTGAATCACCACACTTGGCAGTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTAAGTGCTGGGATCAAAGGTGTGAATCACCACACTTGGCAGTGT  749

seq1  AGTGGTTCTTAAAATAGTAAACTGAATTC  777
      |||||||||||||||||||||||||||||
seq2  AGTGGTTCTTAAAATAGTAAACTGAATTC  778