BAC Information

Click to search

BAC

Clone NameB6Ng01-168N06
Chromosome17 (Build37)8 (Build37)
Map Location 10,919,294 - 10,919,41147,964,941 - 47,966,011
singlet/doubletsingletsinglet
Overlap genePacrg
Upstream geneQk, LOC675815
Downstream genePark2, LOC100041113
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168N06.bB6Ng01-168N06.g
ACCDH959967DH959968
length801,093
definitionDH959967|Mus musculus domesticus DNA, BAC clone: B6Ng01-168N06, 5' end.DH959968|Mus musculus domesticus DNA, BAC clone: B6Ng01-168N06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,919,294 - 10,919,411)(47,964,941 - 47,966,011)
sequence
cttcatactttgtgtgtgtgtctctgtctgtctgtctgtctgtctgtctg
tctgtgtctgtgtgtgtgtgtgtgtgtgtg
gaattccaagcgccatttgttaaagatgttgtcttttctccaatgtatat
ttttcatgtgtatctttgtgcaaaatcgggcagttgaagttatgaacact
tagatctagacactatgttgtgatccatttctttgtgagtctattcatgc
atgagtatcttgctgtttatatttctatggttcagtagcacaatttgaga
tcaggtaagggggctaccttgtgcagtattatttttattgaagatacttg
gatgatcactggggtttttgtgttgctatataaattttgggattgttttt
ctaagtccgaggagaatggctcatagattttaattaggattgcaatgaac
ctacagagcgctgttgttaggatgcccgttatcacagattaactcttcca
gtccattaattctttccgtcttcattaattctaaggtttttaccgcagag
acctttcatccttggctaggttcattgctgtgcattttatttgtttattt
gcagctatttttggaagggaactgtttccctgatttcaaccctctgcagc
aaacccactttgtagcagttaataagagtcctagaggctcgggtacaagt
agaagtcatcacgagagcttggctttgggagaattgcctgtatccacact
cctccacacggagctcaagggccattttagaagagtgagcgtgaagattg
caggggtcagcagatgaagagctgtgcaatgacagagtgtcatacactca
acggctgtcagctcacagcggctacgcggcctgcataagacttagacaat
atcaagctggtcacaatccaaagggcagggtcctggatgccccagccttg
gaggaggaactgacagatgatgcttgctgagggaggcagaattatctcct
tcgaggatatggctgctagtaggttggccaggtctcagtggataagctta
cacttatatgcacgtgagcacactagttcgactatgggagttatcataac
taaacacaaacagaactacaaaccaatctaactatccatcgaaacaaaaa
caactacagcaacccgaggaattgtactgggcggccagtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_10919294_10919411
seq2: B6Ng01-168N06.b_61_130 (reverse)

seq1  CACACAGACACAGACACACACAGACACATACACAGACACAGAGAGAGAGA  50
                   ||||||||| ||||| ||||||||||           
seq2  ------------CACACACACACACACACACACAGACAC-----------  27

seq1  GAGAGAGAGAGAGACAGACAGACAGACAGACAGAGACAGAGAGAGAGAGA  100
             ||| ||||||||||||||||||||||                 
seq2  -------AGACAGACAGACAGACAGACAGACAG-----------------  53

seq1  CACAGAGACACACACACA  118
       |||||||||||||||||
seq2  -ACAGAGACACACACACA  70

seq1: chr8_47964941_47966011
seq2: B6Ng01-168N06.g_104_1158

seq1  TCCAATGTATATTTTTCATGTGTATCTTTGTGCAAAATCGGGCAGTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGTATATTTTTCATGTGTATCTTTGTGCAAAATCGGGCAGTTGAA  50

seq1  GTTATGAACACTTAGATCTAGACACTATGTTGTGATCCATTTCTTTGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAACACTTAGATCTAGACACTATGTTGTGATCCATTTCTTTGTGA  100

seq1  GTCTATTCATGCATGAGTATCTTGCTGTTTATATTTCTATGGTTCAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTCATGCATGAGTATCTTGCTGTTTATATTTCTATGGTTCAGTAG  150

seq1  CACAATTTGAGATCAGGTAAGGGGGCTACCTTGTGCAGTATTATTTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTTGAGATCAGGTAAGGGGGCTACCTTGTGCAGTATTATTTTTAT  200

seq1  TGAAGATACTTGGATGATCACTGGGGTTTTTGTGTTGCTATATAAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATACTTGGATGATCACTGGGGTTTTTGTGTTGCTATATAAATTTT  250

seq1  GGGATTGTTTTTCTAAGTCCGAGGAGAATGGCTCATAGATTTTAATTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGTTTTTCTAAGTCCGAGGAGAATGGCTCATAGATTTTAATTAGG  300

seq1  ATTGCAATGAACCTACAGAGCGCTGTTGTTAGGATGCCCGTTATCACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAATGAACCTACAGAGCGCTGTTGTTAGGATGCCCGTTATCACAGA  350

seq1  TTAACTCTTCCAGTCCATTAATTCTTTCCGTCTTCATTAATTCTAAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTTCCAGTCCATTAATTCTTTCCGTCTTCATTAATTCTAAGGTT  400

seq1  TTTACCGCAGAGACCTTTCATCCTTGGCTAGGTTCATTGCTGTGCATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCGCAGAGACCTTTCATCCTTGGCTAGGTTCATTGCTGTGCATTTT  450

seq1  ATTTGTTTATTTGCAGCTATTTTTGGAAGGGAACTGTTTCCCTGATTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTATTTGCAGCTATTTTTGGAAGGGAACTGTTTCCCTGATTTCA  500

seq1  ACCCTCTGCAGCAAACCCACTTTGTAGCAGTTAATAAGAGTCCTAGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTGCAGCAAACCCACTTTGTAGCAGTTAATAAGAGTCCTAGAGGC  550

seq1  TCGGGTACAAGTAGAAGTCATCACGAGAGCTTGGCTTTGGGAGAATTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTACAAGTAGAAGTCATCACGAGAGCTTGGCTTTGGGAGAATTGCC  600

seq1  TGTATCCACACTCCTCCACACGGAGCTCAAGGGCCATTTTAGAAGAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCACACTCCTCCACACGGAGCTCAAGGGCCATTTTAGAAGAGTGA  650

seq1  GCGTGAAGATTGCAGGGGTCAGCAGATGAAGAGCTGTGCAATGACAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGAAGATTGCAGGGGTCAGCAGATGAAGAGCTGTGCAATGACAGAGT  700

seq1  GTCATACACTCAACGGCTGTCAGCTCACAGCGGCTACGCGGCCTGCATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATACACTCAACGGCTGTCAGCTCACAGCGGCTACGCGGCCTGCATAA  750

seq1  GACTTAGACAATATCAAGCTGGTCACAATCCAAAGGGCAGGGTCCTGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGACAATATCAAGCTGGTCACAATCCAAAGGGCAGGGTCCTGGAT  800

seq1  GCCCCAGCCTTGGAGGAGGAACTGACAGATGATGCTTGCTGAGGGAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGCCTTGGAGGAGGAACTGACAGATGATGCTTGCTGAGGGAGGCA  850

seq1  GAATTATCTCCTTCGAGGATATGGCTGCTAGTAGGTTGGCCAGGTCTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATCTCCTTCGAGGATATGGCTGCTAGTAGGTTGGCCAGGTCTCAG  900

seq1  TGGATAAGCTTACACTTATATGCACGTGAGCAACACTAGTTCGACTATGG  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGATAAGCTTACACTTATATGCACGTGAGC-ACACTAGTTCGACTATGG  949

seq1  GAGTTATCAATAACTAAAACACAAAACAAGACACAACAAAAACCAAACCA  1000
      |||||||| |||||| ||||||||      ||| ||| | || | || | 
seq2  GAGTTATC-ATAACT-AAACACAA------ACAGAACTACAAACCAATCT  991

seq1  AACCAACCAATCGAAAACCAAAAACAAACTACAGCAAACCCAGAGGACAT  1050
      ||| | || |||||||  ||||||| |||||||||||  || ||||| ||
seq2  AACTATCC-ATCGAAA--CAAAAAC-AACTACAGCAA--CCCGAGGA-AT  1034

seq1  GGAACTGGGCGGCCAGTGGGG  1071
       | ||||||||||||||||||
seq2  TGTACTGGGCGGCCAGTGGGG  1055