BAC Information

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BAC

Clone NameB6Ng01-169A03
Chromosome17 (Build37)
Map Location 13,111,383 - 13,325,112
singlet/doubletdoublet
Overlap geneTcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a
Upstream genePark2, Agpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2, Slc22a1, Igf2r, Air, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18
Downstream geneSmok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169A03.bB6Ng01-169A03.g
ACCDH960098DH960099
length1,0301,111
definitionDH960098|Mus musculus domesticus DNA, BAC clone: B6Ng01-169A03, 5' end.DH960099|Mus musculus domesticus DNA, BAC clone: B6Ng01-169A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,324,079 - 13,325,112)(13,111,383 - 13,112,502)
sequence
gaattcttcgtggaggaacaatctctcctgtattgccaacaaagccctca
ctccaaagctcccattctcctggggcttggaatcccttttcctttttctg
ctgggtgggccgagccacacagcagattgtaatagagttacaatgtaaca
ctaagactaactaaaatgtgcctaaacgagcaggtgccagctgctggctc
cggaagacaggggcctaatatctcctacttatttgtgattctttggtgat
actgaaaatggaccataatgatttaatttctacagctgtttgagagccca
tggggtgtgtgcgtctcatctgggggctctgacatcacctgtggggtgat
gcacaccctctgtagatgacatccagatgtgaaagccagcccctcccaca
gcccctgcagtgagagcagagctcctgccttcccttgtgactcacaatcc
tgcctgctctcaatgcacagcctcagcctgacttcttcctcagctgagtt
cagtgtccagcctgacttttttcctccgctgagtggatgctcgcctcctt
gtgctgtctcggccatctcagccttgcgaatctgctaggcagtacgacga
aaagggacagagcaaatgggatgggcaggtatggccaggtatgtgtttgt
tagccttagaggaggcagttgatgagctagtcctgctggccacccaagca
caagccccaaaccacaagttcaggctgggaggaggggtctggcttggtgg
aagtggcagaccatttccatatctaaggtagagaattcaggagacatttg
ctaaccaacaaagctgtctaccagagttcacctgggctccaggagggacc
tggggatcatggtaaatagcccaaccaaaaggtgtttcccatccacctgc
cccaagcagataacccagggcctgcagaaggagattggtagaggaggcca
agctgcacaagctggcccttccacttcagtgtttctgtacttgggctggt
gcgttcttttcccgcatctgggtaatccct
gaattcaaaatagaaatttgcagaagttaatttgctaccatatagtgcta
atggctagtcagcaaacatggcgaatagtgtaacattttgtgagttagcc
tgcttaagtagtaaaatactgtttggtgaggcagattttagacctggcaa
aataaatggtgagggaaaagtatttatagacttaccctttactaggaaag
aattgaatctgtttttaaatagtgaaaatggactttatctaatttgttca
tagacaatgtaacttaaaaataaccttaattccactcgaaagaagaaaag
ttttttggagattttgttttgttttattattaagaaaactggtttttcac
agtgttctctattttaaatgatcttaagattttattgaaattactggaat
gataccagtcatttccattgattgctatctagctcttgttgcagtaagtc
tgtaaatgtaatggatataaattctgctgtattagatttttagcattttc
tggcttttccagcttggaccatttccatagaatacttttaggttttttga
ggcaggatttctctgtgtagccctgactgtcctggagctcactttgtaga
ccaggctggcctcgaactcagaaatccgcctgcctctacctcccaagtgc
taggattaaaggcatgcgccaccacgcctggcacagaatacttcctagtg
gtctctatgttgtgttttcaacgagttgctactcacttgtctactgtggt
attaataataccttcttaataatcatgttttcctgttgtgcatattgagt
gccatgcatatttaaagcaatgcttgatcaacaggtaatcattgcagcgg
agcttctgaaaaatgcagatgagctagtcaaacagaaaattcatccaaca
tcagttattagtggctatcgtcttgcctgcaagtagattgctttcaaaaa
tgttattttgtggaatagtagtaaattgtatcttaatgttgtagctaagc
gtaagttggaactgttgcatcttagcattccaggtgctcactggaatact
aagctcggtgtaactttccatttgactacacaaattttctctaataaata
atggctatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_13324079_13325112
seq2: B6Ng01-169A03.b_46_1075 (reverse)

seq1  AGGGATTTACCCAGATGCCGGGAAAGAACGCACCAGCCCAGGTACAGAAA  50
      ||||| |||||||||||| || |||||||||||||||||| |||||||||
seq2  AGGGA-TTACCCAGATGCGGGAAAAGAACGCACCAGCCCAAGTACAGAAA  49

seq1  CACTGAAGTGGAAGGGCCAGCTTGTGCAGCCTGGGCCTCCTCTACCAATT  100
      ||||||||||||||||||||||||||||| || ||||||||||||||| |
seq2  CACTGAAGTGGAAGGGCCAGCTTGTGCAG-CTTGGCCTCCTCTACCAA-T  97

seq1  CTCCTTCCTGCAGGCCCTGGGTTATCTGCTTGGGGCAGGTGGATGGGAAA  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTT-CTGCAGGCCCTGGGTTATCTGCTTGGGGCAGGTGGATGGGAAA  146

seq1  CACCTTTTGGTTGGGCTATTTACCATGATCCCCAGGTCCCTCCTGGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTTGGTTGGGCTATTTACCATGATCCCCAGGTCCCTCCTGGAGCC  196

seq1  CAGGTGAACTCTGGTAGACAGCTTTGTTGGTTAGCAAATGTCTCCTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAACTCTGGTAGACAGCTTTGTTGGTTAGCAAATGTCTCCTGAAT  246

seq1  TCTCTACCTTAGATATGGAAATGGTCTGCCACTTCCACCAAGCCAGACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACCTTAGATATGGAAATGGTCTGCCACTTCCACCAAGCCAGACCC  296

seq1  CTCCTCCCAGCCTGAACTTGTGGTTTGGGGCTTGTGCTTGGGTGGCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCAGCCTGAACTTGTGGTTTGGGGCTTGTGCTTGGGTGGCCAGC  346

seq1  AGGACTAGCTCATCAACTGCCTCCTCTAAGGCTAACAAACACATACCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTAGCTCATCAACTGCCTCCTCTAAGGCTAACAAACACATACCTGG  396

seq1  CCATACCTGCCCATCCCATTTGCTCTGTCCCTTTTCGTCGTACTGCCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCTGCCCATCCCATTTGCTCTGTCCCTTTTCGTCGTACTGCCTAG  446

seq1  CAGATTCGCAAGGCTGAGATGGCCGAGACAGCACAAGGAGGCGAGCATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCGCAAGGCTGAGATGGCCGAGACAGCACAAGGAGGCGAGCATCC  496

seq1  ACTCAGCGGAGGAAAAAAGTCAGGCTGGACACTGAACTCAGCTGAGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCGGAGGAAAAAAGTCAGGCTGGACACTGAACTCAGCTGAGGAAG  546

seq1  AAGTCAGGCTGAGGCTGTGCATTGAGAGCAGGCAGGATTGTGAGTCACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGGCTGAGGCTGTGCATTGAGAGCAGGCAGGATTGTGAGTCACAA  596

seq1  GGGAAGGCAGGAGCTCTGCTCTCACTGCAGGGGCTGTGGGAGGGGCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGCAGGAGCTCTGCTCTCACTGCAGGGGCTGTGGGAGGGGCTGGC  646

seq1  TTTCACATCTGGATGTCATCTACAGAGGGTGTGCATCACCCCACAGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATCTGGATGTCATCTACAGAGGGTGTGCATCACCCCACAGGTGA  696

seq1  TGTCAGAGCCCCCAGATGAGACGCACACACCCCATGGGCTCTCAAACAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAGCCCCCAGATGAGACGCACACACCCCATGGGCTCTCAAACAGC  746

seq1  TGTAGAAATTAAATCATTATGGTCCATTTTCAGTATCACCAAAGAATCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAATTAAATCATTATGGTCCATTTTCAGTATCACCAAAGAATCAC  796

seq1  AAATAAGTAGGAGATATTAGGCCCCTGTCTTCCGGAGCCAGCAGCTGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTAGGAGATATTAGGCCCCTGTCTTCCGGAGCCAGCAGCTGGCA  846

seq1  CCTGCTCGTTTAGGCACATTTTAGTTAGTCTTAGTGTTACATTGTAACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCGTTTAGGCACATTTTAGTTAGTCTTAGTGTTACATTGTAACTC  896

seq1  TATTACAATCTGCTGTGTGGCTCGGCCCACCCAGCAGAAAAAGGAAAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAATCTGCTGTGTGGCTCGGCCCACCCAGCAGAAAAAGGAAAAGG  946

seq1  GATTCCAAGCCCCAGGAGAATGGGAGCTTTGGAGTGAGGGCTTTGTTGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCAAGCCCCAGGAGAATGGGAGCTTTGGAGTGAGGGCTTTGTTGGC  996

seq1  AATACAGGAGAGATTGTTCCTCCACGAAGAATTC  1034
      ||||||||||||||||||||||||||||||||||
seq2  AATACAGGAGAGATTGTTCCTCCACGAAGAATTC  1030

seq1: chr17_13111383_13112502
seq2: B6Ng01-169A03.g_67_1177

seq1  GAATTCAAAATAGAAATTTGCAGAAGTTAATTTGCTACCATATAGTGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATAGAAATTTGCAGAAGTTAATTTGCTACCATATAGTGCTA  50

seq1  ATGGCTAGTCAGCAAACATGGCGAATAGTGTAACATTTTGTGAGTTAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAGTCAGCAAACATGGCGAATAGTGTAACATTTTGTGAGTTAGCC  100

seq1  TGCTTAAGTAGTAAAATACTGTTTGGTGAGGCAGATTTTAGACCTGGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAGTAGTAAAATACTGTTTGGTGAGGCAGATTTTAGACCTGGCAA  150

seq1  AATAAATGGTGAGGGAAAAGTATTTATAGACTTACCCTTTACTAGGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGGTGAGGGAAAAGTATTTATAGACTTACCCTTTACTAGGAAAG  200

seq1  AATTGAATCTGTTTTTAAATAGTGAAAATGGACTTTATCTAATTTGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATCTGTTTTTAAATAGTGAAAATGGACTTTATCTAATTTGTTCA  250

seq1  TAGACAATGTAACTTAAAAATAACCTTAATTCCACTCGAAAGAAGAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAATGTAACTTAAAAATAACCTTAATTCCACTCGAAAGAAGAAAAG  300

seq1  TTTTTTGGAGATTTTGTTTTGTTTTATTATTAAGAAAACTGGTTTTTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGAGATTTTGTTTTGTTTTATTATTAAGAAAACTGGTTTTTCAC  350

seq1  AGTGTTCTCTATTTTAAATGATCTTAAGATTTTATTGAAATTACTGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTCTATTTTAAATGATCTTAAGATTTTATTGAAATTACTGGAAT  400

seq1  GATACCAGTCATTTCCATTGATTGCTATCTAGCTCTTGTTGCAGTAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCAGTCATTTCCATTGATTGCTATCTAGCTCTTGTTGCAGTAAGTC  450

seq1  TGTAAATGTAATGGATATAAATTCTGCTGTATTAGATTTTTAGCATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGTAATGGATATAAATTCTGCTGTATTAGATTTTTAGCATTTTC  500

seq1  TGGCTTTTCCAGCTTGGACCATTTCCATAGAATACTTTTAGGTTTTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTCCAGCTTGGACCATTTCCATAGAATACTTTTAGGTTTTTTGA  550

seq1  GGCAGGATTTCTCTGTGTAGCCCTGACTGTCCTGGAGCTCACTTTGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGATTTCTCTGTGTAGCCCTGACTGTCCTGGAGCTCACTTTGTAGA  600

seq1  CCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTACCTCCCAAGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTACCTCCCAAGTGC  650

seq1  TAGGATTAAAGGCATGCGCCACCACGCCTGGCACAGAATACTTCCTAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTAAAGGCATGCGCCACCACGCCTGGCACAGAATACTTCCTAGTG  700

seq1  GTCTCTATGTTGTGTTTTCAACGAGTTGCTACTCACTTGTCTACTGTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTATGTTGTGTTTTCAACGAGTTGCTACTCACTTGTCTACTGTGGT  750

seq1  ATTAATAATACCTGCTTAATAATCATGTTTTCCTGTTGTGCATATTGAGT  800
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTAATAATACCTTCTTAATAATCATGTTTTCCTGTTGTGCATATTGAGT  800

seq1  GCCATGCATATTTAAAGCAATGCTTGATCAACAGGTAATCATTGCAGCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCATATTTAAAGCAATGCTTGATCAACAGGTAATCATTGCAGCGG  850

seq1  AGCTTCTGAAAAATGCAGATGAGCTAGTCAAACAGAAAATTCATCCAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGAAAAATGCAGATGAGCTAGTCAAACAGAAAATTCATCCAACA  900

seq1  TCAGTTATTAGTGGCTATCGTCTTGCCTGCAAGTAAGATTGCTTTCAAAA  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCAGTTATTAGTGGCTATCGTCTTGCCTGCAAGT-AGATTGCTTTCAAAA  949

seq1  ACATGTTATTTTGTGGAATAGTAGTAAATTGTATCTTAATGTTGTAGCTA  1000
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  --ATGTTATTTTGTGGAATAGTAGTAAATTGTATCTTAATGTTGTAGCTA  997

seq1  AGCGTTAAGTTGGAACTGTTGCATCTTAGCATT-CAAGTGCTCACCTGGA  1049
      |||| |||||||||||||||||||||||||||| || ||||||| |||||
seq2  AGCG-TAAGTTGGAACTGTTGCATCTTAGCATTCCAGGTGCTCA-CTGGA  1045

seq1  GTACTAAGCTCCGTGTACTTTTCCCATTTGACTACCACATTTTTCTCCTA  1099
       |||||||||| |||||  ||| ||||||||||||   | |||||| |||
seq2  ATACTAAGCTCGGTGTAACTTT-CCATTTGACTACACAAATTTTCT-CTA  1093

seq1  ATAGAGTTTAGTGGCTATGCT  1120
      ||| |   || ||||||||||
seq2  ATAAA---TAATGGCTATGCT  1111