BAC Information

Click to search

BAC

Clone NameB6Ng01-169O10
Chromosome17 (Build37)
Map Location 52,645,511 - 52,749,232
singlet/doubletdoublet
Overlap genenone
Upstream geneSatb1, EG628919, LOC672987, EG328839
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169O10.bB6Ng01-169O10.g
ACCDH960753DH960754
length1,1411,171
definitionDH960753|Mus musculus domesticus DNA, BAC clone: B6Ng01-169O10, 5' end.DH960754|Mus musculus domesticus DNA, BAC clone: B6Ng01-169O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,645,511 - 52,646,672)(52,748,053 - 52,749,232)
sequence
gaattcataagactgactccctaagttctttgtatattttggatattagc
cctctatcagatgtagggttggtaaagatcttttcctaatctattggttg
ccattttgtcctattgacagtgtcctttgccttacagaagctttgcaatt
ttataaggtctcattgaaacatttttaaaaatcagaaatacataagacaa
tgaaaacgagagtttcattcatctcatttaaatacttgactccaactaga
aaataacttagggtaaattttaactgcctcttttatagattttagatcac
aatgagaccagggaaaacactcaattttatagttctaggaagagatagac
aatgtataatgtataggtagacatttctgactcctactgtggctcttcgg
ttcccagggtccttcattagcacttcccagaagccctgcagcgctccttg
tggctttcatggattatgtgatgcctgagaaaaggttttcaggaggagat
gaacctgtgttcaagttacatatgggcaaactggagccgctgtgatcgaa
caacttccttgttttttgccacttcaatggtgacaatttgcagaccatca
acctcaagaaggtttcccccttgacctccaaagcctggtctgtggctatg
taaaaagtgaacattgccacagtccccactcttctgtccctttccttctc
acctctacagtgggacaaatgattatatctgcttcatcaggttgccatgg
agattgagatagattgacgtacatgaggtatttggaatagtgcgtgtgtc
agaaagacagtacacatgttagctattattagaatctttactcaaaagct
tcctgttatgcgagactgcactttgatgaaggagcttgcacctgaattgt
attacaatgagtttttcatacacaaggtaataacagtatgaaaaatatta
caggggtagatgcagaggtgtgtacatccttcagattggaggcctcgtgt
gaatatcccacccagggactcatccacattctcttggttatattctcatc
tggctgagaatatgtagggatcatagaaagccaatgtttatcaagcacct
ggagcagcatgctgtggcaaggtgcgagaaatgttctctgt
gaattctgcgggacttaaaggagtcagacaactgtattaacagcagcaga
atacatgatctatcttccagagaattttcaatttaagaactatatctgag
cacttaaattcctgagaaaactcttcggttgctccagttgccaaatttga
aaagttgaatgctgccataggcaaaattatagtcttacctggtatttttt
tgtttttgtttttgtttttgtttttgtttttgtttttgtgtctctactaa
accaaaatggattaaaaacttagaatctggatggttgtcaaccaacgcag
agtgtaggtgaattgtgccctatgcagcagttgtgagcctgtgccttcta
actgtggcttttctccataggcatccagggactgcttgctagcacacctg
ccatcagagttaccaggaatgaattccagcagacctgcaatcttttttct
tcaccacaggcaaaattctatagtagaactcaggggtgaaagacccagga
ggagaagagtagtcaactatgcagccagaaatcaacaccttctactaaca
gaaagccaactccctgggggaaaacaggcacttctctcagaaaatgatca
cagcagtctatggggcccataaccgagcagagagatattattagggtctg
acaggcaccgaggatttagagacttcccataactgttttccatcatccac
caaactctatcttgacccttttgttctttaaggtatgtattttccccccc
aaatcccatataaatgccagcagcacatggttcaaaaactgctcaaatca
atagagtgggtttggatgctatgatacattagcatttctacttgggtgtt
acttattaagtgaagacttctcggcctaactaatactcccagcttttttc
tgacctatactgtagcagtttgtgtagatgtattactgccccctttgata
taaagagacaggtgatttatcccagtgtatggcttttgtatatagacatg
tcaccaaacatcatcggaaagatgagacaagggatgagattccctttctc
ataaaggaaatgctcttccagagtatgtcattctaggatggcctcagaaa
aggtaaccagagccttcatacacaggcttttggtatcctgtgaaatgttg
tctgccatgctgttggcttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_52645511_52646672
seq2: B6Ng01-169O10.b_45_1185

seq1  GAATTCATAAGACTGACTCCCTAAGTTCTTTGTATATTTTGGATATTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGACTGACTCCCTAAGTTCTTTGTATATTTTGGATATTAGC  50

seq1  CCTCTATCAGATGTAGGGTTGGTAAAGATCTTTTCCTAATCTATTGGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATCAGATGTAGGGTTGGTAAAGATCTTTTCCTAATCTATTGGTTG  100

seq1  CCATTTTGTCCTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGTCCTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCAATT  150

seq1  TTATAAGGTCTCATTGAAACATTTTTAAAAATCAGAAATACATAAGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGGTCTCATTGAAACATTTTTAAAAATCAGAAATACATAAGACAA  200

seq1  TGAAAACGAGAGTTTCATTCATCTCATTTAAATACTTGACTCCAACTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACGAGAGTTTCATTCATCTCATTTAAATACTTGACTCCAACTAGA  250

seq1  AAATAACTTAGGGTAAATTTTAACTGCCTCTTTTATAGATTTTAGATCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTTAGGGTAAATTTTAACTGCCTCTTTTATAGATTTTAGATCAC  300

seq1  AATGAGACCAGGGAAAACACTCAATTTTATAGTTCTAGGAAGAGATAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGACCAGGGAAAACACTCAATTTTATAGTTCTAGGAAGAGATAGAC  350

seq1  AATGTATAATGTATAGGTAGACATTTCTGACTCCTACTGTGGCTCTTCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATAATGTATAGGTAGACATTTCTGACTCCTACTGTGGCTCTTCGG  400

seq1  TTCCCAGGGTCCTTCATTAGCACTTCCCAGAAGCCCTGCAGCGCTCCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGGTCCTTCATTAGCACTTCCCAGAAGCCCTGCAGCGCTCCTTG  450

seq1  TGGCTTTCATGGATTATGTGATGCCTGAGAAAAGGTTTTCAGGAGGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTCATGGATTATGTGATGCCTGAGAAAAGGTTTTCAGGAGGAGAT  500

seq1  GAACCTGTGTTCAAGTTACATATGGGCAAACTGGAGCCGCTGTGATCGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGTGTTCAAGTTACATATGGGCAAACTGGAGCCGCTGTGATCGAA  550

seq1  CAACTTCCTTGTTTTTTGCCACTTCAATGGTGACAATTTGCAGACCATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCCTTGTTTTTTGCCACTTCAATGGTGACAATTTGCAGACCATCA  600

seq1  ACCTCAAGAAGGTTTCCCCCTTGACCTCCAAAGCCTGGTCTGTGGCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAAGAAGGTTTCCCCCTTGACCTCCAAAGCCTGGTCTGTGGCTATG  650

seq1  TAAAAAGTGAACATTGCCACAGTCCCCACTCTTCTGTCCCTTTCCTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTGAACATTGCCACAGTCCCCACTCTTCTGTCCCTTTCCTTCTC  700

seq1  ACCTCTACAGTGGGACAAATGATTATATCTGCTTCATCAGGTTGCCATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTACAGTGGGACAAATGATTATATCTGCTTCATCAGGTTGCCATGG  750

seq1  AGATTGAGATAGATTGACGTACATGAGGTATTTGGAATAGTGCGTGTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGAGATAGATTGACGTACATGAGGTATTTGGAATAGTGCGTGTGTC  800

seq1  AGAAAGACAGTACACATGTTAGCTATTATTAGAATCTTTACTCAAAAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACAGTACACATGTTAGCTATTATTAGAATCTTTACTCAAAAGCT  850

seq1  TCCTGTTATGCGAGACTGCACTTTGATGAAGGAGCTTGCACCTGAATTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTATGCGAGACTGCACTTTGATGAAGGAGCTTGCACCTGAATTGT  900

seq1  ATTACAATGAGTTTTTCATACACAAGGTAATAACAGTATGAAAAATATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAATGAGTTTTTCATACACAAGGTAATAACAGTATGAAAAATATTA  950

seq1  CAAGGGGTAGATGCAGAGGTGTGTAACATCCTTCAGGATTGGAGGCCTCG  1000
      | |||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  C-AGGGGTAGATGCAGAGGTGTGT-ACATCCTTCA-GATTGGAGGCCTCG  997

seq1  TGTGGAATATCCCACCCAGGGACTCCATCCACATTCCTCTTGGTTTATAT  1050
      ||| |||||||||||||||||||| |||||||||| ||||||| ||||||
seq2  TGT-GAATATCCCACCCAGGGACT-CATCCACATT-CTCTTGG-TTATAT  1043

seq1  TCTCATTCTGGCCTGAAGAATAATGTTAGGGAATCATAGGAAAGCCAAAA  1100
      ||||| ||||| ||| ||||| ||| ||||| |||||| |||||||  ||
seq2  TCTCA-TCTGG-CTG-AGAAT-ATG-TAGGG-ATCATA-GAAAGCC--AA  1084

seq1  TGTTTATCACAGCACCTGGAAGCAAGCATGCTGTGGGCAGGTGCCGAGAA  1150
      ||||||||| ||||||||| ||| ||||||||||||  ||||| |||| |
seq2  TGTTTATCA-AGCACCTGG-AGC-AGCATGCTGTGGCAAGGTG-CGAG-A  1129

seq1  AATGTTCTCTGT  1162
      ||||||||||||
seq2  AATGTTCTCTGT  1141

seq1: chr17_52748053_52749232
seq2: B6Ng01-169O10.g_69_1239 (reverse)

seq1  TTAAGCCAACAGCCATGGCAGCAGACATTTCACAGAGAACAAAAGGCCTG  50
      |||||||||||| ||||||||   |||||||||||   || ||| |||||
seq2  TTAAGCCAACAG-CATGGCAGACAACATTTCACAGGATACCAAAAGCCTG  49

seq1  TGTATGGAGGGCTCTGGGTTACCTTTTTCTGA-GCTATCCTAGATTGACA  99
      ||||| || |||||| ||||||| |||||||| || |||||||| |||||
seq2  TGTAT-GAAGGCTCT-GGTTACC-TTTTCTGAGGCCATCCTAGAATGACA  96

seq1  TACTTCTGGGGAGAGCATTTCCTTTATGGAGAAGGGAATCTCATCCCTTG  149
      ||| ||| || |||||||||||||||||   |||||||||||||||||||
seq2  TAC-TCT-GGAAGAGCATTTCCTTTATGAGAAAGGGAATCTCATCCCTTG  144

seq1  TCTCATCTTTCCGATGATGTTTGGTGGACATTGTCTATATAC-AAAGCCA  198
      ||||||||||||||||||||||||| |||| ||||||||||| |||||||
seq2  TCTCATCTTTCCGATGATGTTTGGT-GACA-TGTCTATATACAAAAGCCA  192

seq1  TTACACTGGGATAAATCAACCTTGTCTCTTTTATATCAAAGGGGGCAGTA  248
       |||||||||||||||||  | |||||| |||||||||||||||||||||
seq2  -TACACTGGGATAAATCA--CCTGTCTC-TTTATATCAAAGGGGGCAGTA  238

seq1  ATACATCTACACAAACTGCTACAGTATAGGTCAG-AAAGAGCTGGGAGTA  297
      |||||||||||||||||||||||||||||||||| ||| |||||||||||
seq2  ATACATCTACACAAACTGCTACAGTATAGGTCAGAAAAAAGCTGGGAGTA  288

seq1  TTAGTTAGGCCGAGAAGTCTTCACTTAATAAGTAACACCCAAGTAGAAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAGGCCGAGAAGTCTTCACTTAATAAGTAACACCCAAGTAGAAAT  338

seq1  GCTAATGTATCATAGCATCCAAACCCACTCTATTGATTTGAGCAGTTTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGTATCATAGCATCCAAACCCACTCTATTGATTTGAGCAGTTTTT  388

seq1  GAACCATGTGCTGCTGGCATTTATATGGGATTTGGGGGGGAAAATACATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATGTGCTGCTGGCATTTATATGGGATTTGGGGGGGAAAATACATA  438

seq1  CCTTAAAGAACAAAAGGGTCAAGATAGAGTTTGGTGGATGATGGAAAACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAGAACAAAAGGGTCAAGATAGAGTTTGGTGGATGATGGAAAACA  488

seq1  GTTATGGGAAGTCTCTAAATCCTCGGTGCCTGTCAGACCCTAATAATATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGGAAGTCTCTAAATCCTCGGTGCCTGTCAGACCCTAATAATATC  538

seq1  TCTCTGCTCGGTTATGGGCCCCATAGACTGCTGTGATCATTTTCTGAGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTCGGTTATGGGCCCCATAGACTGCTGTGATCATTTTCTGAGAG  588

seq1  AAGTGCCTGTTTTCCCCCAGGGAGTTGGCTTTCTGTTAGTAGAAGGTGTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCTGTTTTCCCCCAGGGAGTTGGCTTTCTGTTAGTAGAAGGTGTT  638

seq1  GATTTCTGGCTGCATAGTTGACTACTCTTCTCCTCCTGGGTCTTTCACCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGGCTGCATAGTTGACTACTCTTCTCCTCCTGGGTCTTTCACCC  688

seq1  CTGAGTTCTACTATAGAATTTTGCCTGTGGTGAAGAAAAAAGATTGCAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCTACTATAGAATTTTGCCTGTGGTGAAGAAAAAAGATTGCAGG  738

seq1  TCTGCTGGAATTCATTCCTGGTAACTCTGATGGCAGGTGTGCTAGCAAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGAATTCATTCCTGGTAACTCTGATGGCAGGTGTGCTAGCAAGC  788

seq1  AGTCCCTGGATGCCTATGGAGAAAAGCCACAGTTAGAAGGCACAGGCTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTGGATGCCTATGGAGAAAAGCCACAGTTAGAAGGCACAGGCTCA  838

seq1  CAACTGCTGCATAGGGCACAATTCACCTACACTCTGCGTTGGTTGACAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCTGCATAGGGCACAATTCACCTACACTCTGCGTTGGTTGACAAC  888

seq1  CATCCAGATTCTAAGTTTTTAATCCATTTTGGTTTAGTAGAGACACAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGATTCTAAGTTTTTAATCCATTTTGGTTTAGTAGAGACACAAAA  938

seq1  ACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAAAATACCAGGTAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAAAATACCAGGTAAG  988

seq1  ACTATAATTTTGCCTATGGCAGCATTCAACTTTTCAAATTTGGCAACTGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATTTTGCCTATGGCAGCATTCAACTTTTCAAATTTGGCAACTGG  1038

seq1  AGCAACCGAAGAGTTTTCTCAGGAATTTAAGTGCTCAGATATAGTTCTTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCGAAGAGTTTTCTCAGGAATTTAAGTGCTCAGATATAGTTCTTA  1088

seq1  AATTGAAAATTCTCTGGAAGATAGATCATGTATTCTGCTGCTGTTAATAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAAATTCTCTGGAAGATAGATCATGTATTCTGCTGCTGTTAATAC  1138

seq1  AGTTGTCTGACTCCTTTAAGTCCCGCAGAATTC  1180
      |||||||||||||||||||||||||||||||||
seq2  AGTTGTCTGACTCCTTTAAGTCCCGCAGAATTC  1171