BAC Information

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BAC

Clone NameB6Ng01-170O08
Chromosome17 (Build37)
Map Location 37,864,352 - 37,988,468
singlet/doubletdoublet
Overlap geneOlfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126
Upstream geneLOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1
Downstream geneOlfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170O08.bB6Ng01-170O08.g
ACCDH961495DH961496
length941684
definitionDH961495|Mus musculus domesticus DNA, BAC clone: B6Ng01-170O08, 5' end.DH961496|Mus musculus domesticus DNA, BAC clone: B6Ng01-170O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,864,352 - 37,865,026)(37,987,786 - 37,988,468)
sequence
gaattctttgtgacctagttataccaaaaaatgtacaaatgctacaatac
actgaactgttcagacttgacatgatttgttttaaaaattttaaatataa
cataagaaatattttcaagagtttttatggcagttttccagacttttaat
ctttcttgttcttgttatcagttaatgtattcattttacatccagctcat
tgccgcccactcagtaaactttcccacagtttttcccaatcccattcctc
ctccttctctgagttggttgtatccttcctgggaatccccaacactgtca
gttcaagttcatgtgaggccaggcaaatctcccactgaggtcagataagg
catccaagctataaaaacatcccacatgctggcaacagctttggggataa
cccctgctcctgttgctcaggatatagatgaataccaagctacacatcag
ttacatatgtacagggaggcctaggtccagcccatatatgttctttggtt
ggtggttcagtctctggagcaccaagcatccaggttagatgactttattg
ctcttcctgtggagttcctatcttcttacaggatgcgatccttgctgtga
tttttcataagagttcccaagcttaatccactgtttgtctgtgggtgctt
gtatctgtctgagtcagctgctgggtaaggcctctcaaaagacagccatg
ctagactcctgtcagcaagcatagcagagtatcatgaagagtgccaggga
ctggtgttcgccaatgtgatgagtctcaaattgggctcgtgattggttgg
tcattcattctgcctctgctctaccattcccatgtcagcatttcttgaag
acaagaaaaaattttggtcaaaatttatatgggtgggttgctggccctat
ggctccactgggattcctgcatggctacagaggcggctcct
gaattcttcatttagcagtaacttctttagtgctcttttcaaggactcat
ttctcagactatagataacagggttgagggttgggggtagtagtgtgtaa
aagatagagagcatgaggtctaaagcagttggtgagtctgaggttggctt
tagattggcacaaatgcctgttgagagaaaaaatgaaacaacgaagagat
ggggcaggcaggtggagaagaccttagatcggccttcagcagagggcatc
ctgagaactgtagagaatatctggccataggagaaggcaatccccacaaa
gcaggcaaaggccattacagacatgaaagtagacacttccagtactccaa
agtaatcattagagcaggagagcttgagcaattgcgggatatcacagaag
aactggtgaataattttatccccacagaatctgatagagagtgtacttgc
tgtgaataatgttcctgagttacctccacttagccacacagctgccacag
cccaagtgcactttctgggactcattatgacctcatagtgcagtgggagg
cagatggccacatagcgattataagacatcactgtgagagtggccatttc
actccaggccatacctgtgaagaaaaatatctgcagcatgcattgcccat
ctgaattgtagccacttttgtgttagggaactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_37864352_37865026
seq2: B6Ng01-170O08.b_44_718

seq1  GAATTCTTTGTGACCTAGTTATACCAAAAAATGTACAAATGCTACAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGACCTAGTTATACCAAAAAATGTACAAATGCTACAATAC  50

seq1  ACTGAACTGTTCAGACTTGACATGATTTGTTTTAAAAATTTTAAATATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACTGTTCAGACTTGACATGATTTGTTTTAAAAATTTTAAATATAA  100

seq1  CATAAGAAATATTTTCAAGAGTTTTTATGGCAGTTTTCCAGACTTTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAAATATTTTCAAGAGTTTTTATGGCAGTTTTCCAGACTTTTAAT  150

seq1  CTTTCTTGTTCTTGTTATCAGTTAATGTATTCATTTTACATCCAGCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGTTCTTGTTATCAGTTAATGTATTCATTTTACATCCAGCTCAT  200

seq1  TGCCGCCCACTCAGTAAACTTTCCCACAGTTTTTCCCAATCCCATTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGCCCACTCAGTAAACTTTCCCACAGTTTTTCCCAATCCCATTCCTC  250

seq1  CTCCTTCTCTGAGTTGGTTGTATCCTTCCTGGGAATCCCCAACACTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTCTGAGTTGGTTGTATCCTTCCTGGGAATCCCCAACACTGTCA  300

seq1  GTTCAAGTTCATGTGAGGCCAGGCAAATCTCCCACTGAGGTCAGATAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGTTCATGTGAGGCCAGGCAAATCTCCCACTGAGGTCAGATAAGG  350

seq1  CATCCAAGCTATAAAAACATCCCACATGCTGGCAACAGCTTTGGGGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAGCTATAAAAACATCCCACATGCTGGCAACAGCTTTGGGGATAA  400

seq1  CCCCTGCTCCTGTTGCTCAGGATATAGATGAATACCAAGCTACACATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTCCTGTTGCTCAGGATATAGATGAATACCAAGCTACACATCAG  450

seq1  TTACATATGTACAGGGAGGCCTAGGTCCAGCCCATATATGTTCTTTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATGTACAGGGAGGCCTAGGTCCAGCCCATATATGTTCTTTGGTT  500

seq1  GGTGGTTCAGTCTCTGGAGCACCAAGCATCCAGGTTAGATGACTTTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTCAGTCTCTGGAGCACCAAGCATCCAGGTTAGATGACTTTATTG  550

seq1  CTCTTCCTGTGGAGTTCCTATCTTCTTACAGGATGCGATCCTTGCTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTGTGGAGTTCCTATCTTCTTACAGGATGCGATCCTTGCTGTGA  600

seq1  TTTTTCATAAGAGTTCCCAAGCTTAATCCACTGTTTGTCTGTGGGTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATAAGAGTTCCCAAGCTTAATCCACTGTTTGTCTGTGGGTGCTT  650

seq1  GTATCTGTCTGAGTCAGCTGCTGGG  675
      |||||||||||||||||||||||||
seq2  GTATCTGTCTGAGTCAGCTGCTGGG  675

seq1: chr17_37987786_37988468
seq2: B6Ng01-170O08.g_68_751 (reverse)

seq1  CCAGTTCCCTGGCAC-GAAGTGGCTACATTTCATATGGGCAATGCATGCT  49
      ||||||||||  |||  ||||||||||| |||| ||||||||||||||||
seq2  CCAGTTCCCTAACACAAAAGTGGCTACAATTCAGATGGGCAATGCATGCT  50

seq1  GCAGATATTTTTCTTCACAGGTTTGGCCTGGAGTGAAATGGCCACTCTCA  99
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCAGATATTTTTCTTCACAGGTATGGCCTGGAGTGAAATGGCCACTCTCA  100

seq1  CAGTGATGTCTTATGATCGCTATGTGGCCATCTGCCTCCCACTGCACTAT  149
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAGTGATGTCTTATAATCGCTATGTGGCCATCTGCCTCCCACTGCACTAT  150

seq1  GAGGTCATAATGAGTCCCAGAAAGTGCACTTGGGCTGTGGCAGCTGTGTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCATAATGAGTCCCAGAAAGTGCACTTGGGCTGTGGCAGCTGTGTG  200

seq1  GCTAAGTGGAGGTATCTCAGGAACATTATTCACAGCAAGTACACTCTCTA  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCTAAGTGGAGGTAACTCAGGAACATTATTCACAGCAAGTACACTCTCTA  250

seq1  TCAGATTCTGTGGGGATAAAATTATTCACCAGTTCTTCTGTGATATCCCG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTCTGTGGGGATAAAATTATTCACCAGTTCTTCTGTGATATCCCG  300

seq1  CAATTGCTCAAGCTCTCCTGCTCTAATGATTACTTTGGAGTACTGGAAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCTCAAGCTCTCCTGCTCTAATGATTACTTTGGAGTACTGGAAGT  350

seq1  GTCTACTTTCATGTCTGTAATGGCCTTTGCCTGCTTTGTGGGGATTGCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTTTCATGTCTGTAATGGCCTTTGCCTGCTTTGTGGGGATTGCCT  400

seq1  TCTCCTATGGCCAGATATTCTCTACAGTTCTCAGGATGCCCTCTGCTGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTATGGCCAGATATTCTCTACAGTTCTCAGGATGCCCTCTGCTGAA  450

seq1  GGCCGATCTAAGGTCTTCTCCACCTGCCTGCCCCATCTCTTCGTTGTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGATCTAAGGTCTTCTCCACCTGCCTGCCCCATCTCTTCGTTGTTTC  500

seq1  ATTTTTTCTCTCAACAGGCATTTGTGCCTATCTAAAGCCAACCTCAGACT  549
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTTTTTCTCTCAACAGGCATTTGTGCCAATCTAAAGCCAACCTCAGACT  550

seq1  CACCAACTGCTTTAGACCTCATGCTCTCTATCTTTTACACACTACTACCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACTGCTTTAGACCTCATGCTCTCTATCTTTTACACACTACTACCC  600

seq1  CCAACCCTCAACCCTGTTATCTATAGTCTGAGAAATGAGTCCTTGAAAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCTCAACCCTGTTATCTATAGTCTGAGAAATGAGTCCTTGAAAAG  650

seq1  AGCACTAAAGAAGTTACTGCTAAGTGAAGAATTC  683
      ||||||||||||||||||||||| ||||||||||
seq2  AGCACTAAAGAAGTTACTGCTAAATGAAGAATTC  684