BAC Information

Click to search

BAC

Clone NameB6Ng01-173J13
Chromosome17 (Build37)
Map Location 84,976,122 - 85,131,237
singlet/doubletdoublet
Overlap genePlekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc
Upstream geneKcng3, Mta3, Haao, Zfp36l2, Thada
Downstream geneLOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901, 1700106N22Rik, EG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173J13.bB6Ng01-173J13.g
ACCGA001902GA001903
length834729
definitionB6Ng01-173J13.b B6Ng01-173J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,130,406 - 85,131,237)(84,976,122 - 84,976,848)
sequence
gaattcattagagggaatatactacctcgagggggaactgagccgagtct
tacatgtcgtgtggtggttctgtcttatagactccaggcattagagctcg
gcctacaagactccagtggttttgtgatcgatgcattgccagtaatcagg
ttggtatttgatttctgatgtctgaagcactaacactcaggaacgtgtga
gtgagtatctgaagccttcggggagttgacgagcggcccttgtggacgcc
gtgttccctcagtgcttctccaaataagtgccctcctgctttatggcccc
aggggacattagaagtcctaagagtgctggtctgggccctggaagttttc
acctgcccttcctctgctagtgtgagcaagctggccgtgcgcatgttgtg
tgaagagtgagaggcgtgtgctgtcaggaaggggccttctctcggctccc
tccatcattcattctcagtgcacagatgacctgttgttctaaccacttgt
ccgcgtgcagctctgtggattaagtaggctgctgtgcctgaccctgagtc
tcttggtaaagttaacccctcctctggcgacgctcactcagtgggtcatt
cgctgcttgtgtaactgtgaaatacgcttacagggtgtaaccaatctgat
ggtctttttaaggttgaagctcttgagaagttggtagagctgactgagaa
gctgtttgagtgtgacagagaccagatgtactacaacttactgaagctat
acagtaagtgacgcgccttgcctgcttgcactctggtctgcagaggccac
agtggggaaaggaatgtttgggcttggaagaagt
gaattcttctcatttgtttatggttcgttgcgtcacttctctccatgaac
atcccctcttgcactgttaactgtgcgtgagttcaccgtcacctttaacc
ttcctgttcaacagcctagagcttgtcacacagaggggagagaaagaaca
tgtgacaattacagatataaaaccacaaccctagatttaacagtatgaag
tgtgtcagacccacgtgagaaggactcagtggccgacattctcagacagt
ggctaaaggattctccatttccttgaaaccagacactaggtgaaccatgt
gcacttccctgtcagtagcgatgcttgactggacaggactaagtcatcat
gactgcctctctgtatccccttccagctggccacagagaagcacacatac
tatctgacggcggattctcccaatatactggaagaatggatcaaagtgtt
acagagcgttctgcgagtacaagctgcgaaccctctttgcctgcagcctg
agggcaaacccgcagtaaagggcttgctcaccaaggtaggacccttgtcc
tcggcagcatcctaggctgctgctttggtgagtgcgatgcatcatgaatg
gtgaagctcagatagtaaatctatatctaatattctgttttgggggtaag
atagctcaaagtgctttctgccaagcctgaaggtcttgaatgtgtgtgtg
tgagtgagtgagagagagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_85130406_85131237
seq2: B6Ng01-173J13.b_47_880 (reverse)

seq1  ACTTCTTCCAAGCCC-AACATTCC-TTCCCCACTGTGGCCTCTGCAGACC  48
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  ACTTCTTCCAAGCCCAAACATTCCTTTCCCCACTGTGGCCTCTGCAGACC  50

seq1  AGAGTGCAAGCAGGCAAGGCGCGTCACTTACTGTATAGCTTCAGTAAGTT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCAAGCAGGCAAGGCGCGTCACTTACTGTATAGCTTCAGTAAGTT  100

seq1  GTAGTACATCTGGTCTCTGTCACACTCAAACAGCTTCTCAGTCAGCTCTA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTACATCTGGTCTCTGTCACACTCAAACAGCTTCTCAGTCAGCTCTA  150

seq1  CCAACTTCTCAAGAGCTTCAACCTTAAAAAGACCATCAGATTGGTTACAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTCTCAAGAGCTTCAACCTTAAAAAGACCATCAGATTGGTTACAC  200

seq1  CCTGTAAGCGTATTTCACAGTTACACAAGCAGCGAATGACCCACTGAGTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAGCGTATTTCACAGTTACACAAGCAGCGAATGACCCACTGAGTG  250

seq1  AGCGTCGCCAGAGGAGGGGTTAACTTTACCAAGAGACTCAGGGTCAGGCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCGCCAGAGGAGGGGTTAACTTTACCAAGAGACTCAGGGTCAGGCA  300

seq1  CAGCAGCCTACTTAATCCACAGAGCTGCACGCGGACAAGTGGTTAGAACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCTACTTAATCCACAGAGCTGCACGCGGACAAGTGGTTAGAACA  350

seq1  ACAGGTCATCTGTGCACTGAGAATGAATGATGGAGGGAGCCGAGAGAAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCATCTGTGCACTGAGAATGAATGATGGAGGGAGCCGAGAGAAGG  400

seq1  CCCCTTCCTGACAGCACACGCCTCTCACTCTTCACACAACATGCGCACGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCTGACAGCACACGCCTCTCACTCTTCACACAACATGCGCACGG  450

seq1  CCAGCTTGCTCACACTAGCAGAGGAAGGGCAGGTGAAAACTTCCAGGGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTGCTCACACTAGCAGAGGAAGGGCAGGTGAAAACTTCCAGGGCC  500

seq1  CAGACCAGCACTCTTAGGACTTCTAATGTCCCCTGGGGCCATAAAGCAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAGCACTCTTAGGACTTCTAATGTCCCCTGGGGCCATAAAGCAGG  550

seq1  AGGGCACTTATTTGGAGAAGCACTGAGGGAACACGGCGTCCACAAGGGCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACTTATTTGGAGAAGCACTGAGGGAACACGGCGTCCACAAGGGCC  600

seq1  GCTCGTCAACTCCCCGAAGGCTTCAGATACTCACTCACACGTTCCTGAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGTCAACTCCCCGAAGGCTTCAGATACTCACTCACACGTTCCTGAGT  650

seq1  GTTAGTGCTTCAGACATCAGAAATCAAATACCAACCTGATTACTGGCAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGCTTCAGACATCAGAAATCAAATACCAACCTGATTACTGGCAAT  700

seq1  GCATCGATCACAAAACCACTGGAGTCTTGTAGGCCGAGCTCTAATGCCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGATCACAAAACCACTGGAGTCTTGTAGGCCGAGCTCTAATGCCTG  750

seq1  GAGTCTATAAGACAGAACCACCACACGACATGTAAGACTCGGCTCAGTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTATAAGACAGAACCACCACACGACATGTAAGACTCGGCTCAGTTC  800

seq1  CCCCTCGAGGTAGTATATTCCCTCTAATGAATTC  832
      ||||||||||||||||||||||||||||||||||
seq2  CCCCTCGAGGTAGTATATTCCCTCTAATGAATTC  834

seq1: chr17_84976122_84976848
seq2: B6Ng01-173J13.g_70_798

seq1  GAATTCTTCTCATTTGTTTATGGTTCGTTGCGTCACTTCTCTCCATGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCATTTGTTTATGGTTCGTTGCGTCACTTCTCTCCATGAAC  50

seq1  ATCCCCTCTTGCACTGTTAACTGTGCGTGAGTTCACCGTCACCTTTAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTCTTGCACTGTTAACTGTGCGTGAGTTCACCGTCACCTTTAACC  100

seq1  TTCCTGTTCAACAGCCTAGAGCTTGTCACACAGAGGGGAGAGAAAGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTCAACAGCCTAGAGCTTGTCACACAGAGGGGAGAGAAAGAACA  150

seq1  TGTGACAATTACAGATATAAAACCACAACCCTAGATTTAACAGTATGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAATTACAGATATAAAACCACAACCCTAGATTTAACAGTATGAAG  200

seq1  TGTGTCAGACCCACGTGAGAAGGACTCAGTGGCCGACATTCTCAGACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAGACCCACGTGAGAAGGACTCAGTGGCCGACATTCTCAGACAGT  250

seq1  GGCTAAAGGATTCTCCATTTCCTTGAAACCAGACACTAGGTGAACCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAGGATTCTCCATTTCCTTGAAACCAGACACTAGGTGAACCATGT  300

seq1  GCACTTCCCTGTCAGTAGCGATGCTTGACTGGACAGGACTAAGTCATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCCCTGTCAGTAGCGATGCTTGACTGGACAGGACTAAGTCATCAT  350

seq1  GACTGCCTCTCTGTATCCCCTTCCAGCTGGCCACAGAGAAGCACACATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCTCTCTGTATCCCCTTCCAGCTGGCCACAGAGAAGCACACATAC  400

seq1  TATCTGACGGCGGATTCTCCCAATATACTGGAAGAATGGATCAAAGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGACGGCGGATTCTCCCAATATACTGGAAGAATGGATCAAAGTGTT  450

seq1  ACAGAGCGTTCTGCGAGTACAAGCTGCGAACCCTCTTTGCCTGCAGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCGTTCTGCGAGTACAAGCTGCGAACCCTCTTTGCCTGCAGCCTG  500

seq1  AGGGCAAACCCGCAGTAAAGGGCTTGCTCACCAAGGTAGGACCCTTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAAACCCGCAGTAAAGGGCTTGCTCACCAAGGTAGGACCCTTGTCC  550

seq1  TCGGCAGCATCCTAGGCTGCTGCTTTGGTGAGTGCGATGCATCATGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCAGCATCCTAGGCTGCTGCTTTGGTGAGTGCGATGCATCATGAATG  600

seq1  GTGAAGCTCAGATAGTAAATCTATATCTAATATTCTG-TTTGGGGGTAAG  649
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTGAAGCTCAGATAGTAAATCTATATCTAATATTCTGTTTTGGGGGTAAG  650

seq1  ATAGCTCAAAGTGCTTTCTGCCAAGCCTGAAGGTC-TGAATGTGTGTGTG  698
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATAGCTCAAAGTGCTTTCTGCCAAGCCTGAAGGTCTTGAATGTGTGTGTG  700

seq1  TGAGTGAGTGAGAGAGAGAGAGAGAGAGA  727
      |||||||||||||||||||||||||||||
seq2  TGAGTGAGTGAGAGAGAGAGAGAGAGAGA  729