MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-173J13
Chromosome	17 (Build37)
Map Location	84,976,122 - 85,131,237
singlet/doublet	doublet
Overlap gene	Plekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc
Upstream gene	Kcng3, Mta3, Haao, Zfp36l2, Thada
Downstream gene	LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901, 1700106N22Rik, EG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2
Link	Open Mouse BAC browser

Click to get alignment info.

name	Kcng3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225030 MGI:2663923
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mta3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:116871 MGI:2151172
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Haao (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107766 MGI:1349444
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfp36l2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12193 MGI:107945
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Thada (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240174 MGI:3039623
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 57 ESTs, 3 Proteins

name	Plekhh2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:213556 MGI:2146813
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dync2li1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:213575 MGI:1913996
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Abcg5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27409 MGI:1351659
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Abcg8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67470 MGI:1914720
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lrpprc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72416 MGI:1919666
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668848 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668848
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	1110020A21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68531 MGI:1915781
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Ppm1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19043 MGI:101841
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc3a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20532 MGI:1195264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prepl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:213760 MGI:2441932
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043901 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043901
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	1700106N22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73582 MGI:1920832
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG668850 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668850 MGI:3648831
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 574 ESTs, 7 Proteins pseudo : _no_value

name	LOC383282 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:383282
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	LOC100043902 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043902
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs

name	Six3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20473 MGI:102764
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043717 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043717
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 Proteins

name	Six2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20472 MGI:102778
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kcng3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23943841 GeneID:225030 MGI:2663923
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium voltage-gated channel, subfamily G, member 3 transcript_id : NM_153512.1

name	Mta3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:16905114 GeneID:116871 MGI:2151172
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : metastasis associated 3 transcript_id : NM_054082.1

name	Haao (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124249069 GeneID:107766 MGI:1349444
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 3-hydroxyanthranilate 3,4-dioxygenase transcript_id : NM_025325.2

name	Zfp36l2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76253917 GeneID:12193 MGI:107945
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 36, C3H type-like 2 transcript_id : NM_001001806.2

name	Thada (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268929 GeneID:240174 MGI:3039623
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 57 ESTs, 3 Proteins product : thyroid adenoma associated transcript_id : XM_619495.4

name	Plekhh2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142357535 GeneID:213556 MGI:2146813
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pleckstrin homology domain containing, family H (with MyTH4 domain) member 2 transcript_id : NM_177606.3

name	Dync2li1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:26986540 GeneID:213575 MGI:1913996
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dynein cytoplasmic 2 light intermediate chain 1 transcript_id : NM_172256.1

name	Abcg5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:14141177 GeneID:27409 MGI:1351659
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP-binding cassette, sub-family G (WHITE), member 5 transcript_id : NM_031884.1

name	Abcg8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:24475677 GeneID:67470 MGI:1914720
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP-binding cassette, sub-family G (WHITE), member 8 transcript_id : NM_026180.2

name	Lrpprc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134031975 GeneID:72416 MGI:1919666
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine-rich PPR-motif containing transcript_id : NM_028233.2

name	1110020A21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94402190 GeneID:68531 MGI:1915781
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 1110020A21 gene transcript_id : XM_148821.4

name	Ppm1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33859599 GeneID:19043 MGI:101841
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 1B, magnesium dependent, beta isoform transcript_id : NM_011151.1

name	Slc3a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119120878 GeneID:20532 MGI:1195264
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 3, member 1 transcript_id : NM_009205.2

name	Prepl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981860 GeneID:213760 MGI:2441932
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : prolyl endopeptidase-like transcript_id : NM_145984.2

name	LOC100043901 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268931 GeneID:100043901
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical protein LOC100043901 transcript_id : XM_001481204.1

name	1700106N22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802462 GeneID:73582 MGI:1920832
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700106N22 gene transcript_id : NM_028576.2

name	LOC100043902 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268934 GeneID:100043902
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs product : hypothetical protein LOC100043902 transcript_id : XM_001481207.1

name	Six3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130181 GeneID:20473 MGI:102764
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sine oculis-related homeobox 3 homolog (Drosophila) transcript_id : NM_011381.3

name	LOC100043717 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268826 GeneID:100043717
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 Proteins product : similar to cyclic nucleotide gated channel beta 1 transcript_id : XM_001480803.1

name	Six2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33859627 GeneID:20472 MGI:102778
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sine oculis-related homeobox 2 homolog (Drosophila) transcript_id : NM_011380.1

name	Kcng3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23943842 CCDS:CCDS28996.1 GeneID:225030 MGI:2663923
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0008076 - voltage-gated potassium channel complex [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0005267 - potassium channel activity [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA]; GO:0005249 - voltage-gated potassium channel activity [Evidence ISS] [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA] [Evidence ISS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : voltage-gated potassium channel subunit Kv10.1 product : potassium voltage-gated channel, subfamily G, member 3 protein_id : NP_705732.1

name	Mta3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16905115 CCDS:CCDS28997.1 GeneID:116871 MGI:2151172
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : metastasis associated 3 protein_id : NP_473423.1

name	Haao (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:17921976 GeneID:107766 MGI:1349444
definition	GO_function : GO:0000334 - 3-hydroxyanthranilate 3,4-dioxygenase activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : 3-hydroxyanthranilate 3,4-dioxygenase protein_id : NP_079601.1

name	Zfp36l2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:49249965 CCDS:CCDS28998.1 GeneID:12193 MGI:107945
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0043488 - regulation of mRNA stability [Evidence IDA] codon_start : 1 note : butyrate response factor 2 product : zinc finger protein 36, C3H type-like 2 protein_id : NP_001001806.1

name	Thada (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268930 GeneID:240174 MGI:3039623
definition	codon_start : 1 product : thyroid adenoma associated protein_id : XP_619495.3

name	Plekhh2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29243976 CCDS:CCDS28999.1 GeneID:213556 MGI:2146813
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : pleckstrin homology domain containing, family H (with MyTH4 domain) member 2 protein_id : NP_808274.1

name	Dync2li1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:26986541 CCDS:CCDS29000.1 GeneID:213575 MGI:1913996
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0042384 - cilium biogenesis [Evidence IMP]; GO:0007368 - determination of left/right symmetry [Evidence IMP] codon_start : 1 product : dynein 2 light intermediate chain protein_id : NP_758460.1

name	Abcg5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14141178 CCDS:CCDS29001.1 GeneID:27409 MGI:1351659
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : sterolin; ATP-binding cassette sub-family G member 5 product : ATP-binding cassette, subfamily G, member 5 protein_id : NP_114090.1

name	Abcg8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:17530789 CCDS:CCDS29002.1 GeneID:67470 MGI:1914720
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : ATP-binding cassette, sub-family G (WHITE), member 8 protein_id : NP_080456.1

name	Lrpprc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134031976 CCDS:CCDS29003.1 GeneID:72416 MGI:1919666
definition	GO_component : GO:0000794 - condensed nuclear chromosome [Evidence ISS]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence ISS]; GO:0005739 - mitochondrion [Evidence ISS] [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] [Evidence ISS]; GO:0048471 - perinuclear region [Evidence ISS] GO_function : GO:0051015 - actin filament binding [Evidence ISS]; GO:0048487 - beta-tubulin binding [Evidence ISS]; GO:0005488 - binding [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence IDA] codon_start : 1 note : leucine rich protein LRP130 product : leucine-rich PPR motif-containing protein protein_id : NP_082509.2

name	1110020A21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20901299 GeneID:68531 MGI:1915781
definition	codon_start : 1 product : hypothetical protein LOC68531 protein_id : XP_148821.1

name	Ppm1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859600 GeneID:19043 MGI:101841
definition	GO_component : GO:0008287 - protein serine/threonine phosphatase complex [Evidence IEA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA] GO_process : GO:0006470 - protein amino acid dephosphorylation [Evidence IEA] codon_start : 1 function : phophatase product : protein phosphatase 1B, magnesium dependent, beta isoform protein_id : NP_035281.1

name	Slc3a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119120879 GeneID:20532 MGI:1195264
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA] GO_function : GO:0005386 - carrier activity [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : solute carrier family 3, member 1 protein_id : NP_033231.2

name	Prepl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981861 CCDS:CCDS29005.1 GeneID:213760 MGI:2441932
definition	GO_function : GO:0004287 - prolyl oligopeptidase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : prolyl endopeptidase-like protein_id : NP_666096.2

name	LOC100043901 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268932 GeneID:100043901
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481254.1

name	1700106N22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249226 GeneID:73582 MGI:1920832
definition	codon_start : 1 product : hypothetical protein LOC73582 protein_id : NP_082852.1

name	LOC100043902 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268935 GeneID:100043902
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481257.1

name	Six3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:59939908 GeneID:20473 MGI:102764
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003705 - RNA polymerase II transcription factor activity, enhancer binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0007420 - brain development [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0001654 - eye development [Evidence IDA]; GO:0001747 - eye development (sensu Mammalia) [Evidence IGI]; GO:0016481 - negative regulation of transcription [Evidence IDA]; GO:0030178 - negative regulation of Wnt receptor signaling pathway [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : sine oculis-related homeobox 3 homolog protein_id : NP_035511.2

name	LOC100043717 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268827 GeneID:100043717
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480853.1

name	Six2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859628 CCDS:CCDS29007.1 GeneID:20472 MGI:102778
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : sine oculis-related homeobox 2 homolog protein_id : NP_035510.1

name	LOC668848 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668848
definition	number : 1 pseudo : _no_value

name	LOC668848 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668848
definition	number : 2 pseudo : _no_value

name	LOC668848 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668848
definition	number : 3 pseudo : _no_value

name	LOC383282 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:383282
definition	number : 1 pseudo : _no_value

name	EG668850 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149268933 GeneID:668850 MGI:3648831
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 574 ESTs, 7 Proteins product : predicted gene, EG668850 pseudo : _no_value transcript_id : XR_002259.2

clone name	MSMg01-410O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-213F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178C21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-087B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-097A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-208K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-322I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-211D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096M09
singlet/doublet	doublet
plural/unique	plural

clone name	B6Ng01-037H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-219J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-163M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225M10
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-173J13.b	B6Ng01-173J13.g
ACC	GA001902	GA001903
length	834	729
definition	B6Ng01-173J13.b	B6Ng01-173J13.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(85,130,406 - 85,131,237)	(84,976,122 - 84,976,848)
sequence	gaattcattagagggaatatactacctcgagggggaactgagccgagtct tacatgtcgtgtggtggttctgtcttatagactccaggcattagagctcg gcctacaagactccagtggttttgtgatcgatgcattgccagtaatcagg ttggtatttgatttctgatgtctgaagcactaacactcaggaacgtgtga gtgagtatctgaagccttcggggagttgacgagcggcccttgtggacgcc gtgttccctcagtgcttctccaaataagtgccctcctgctttatggcccc aggggacattagaagtcctaagagtgctggtctgggccctggaagttttc acctgcccttcctctgctagtgtgagcaagctggccgtgcgcatgttgtg tgaagagtgagaggcgtgtgctgtcaggaaggggccttctctcggctccc tccatcattcattctcagtgcacagatgacctgttgttctaaccacttgt ccgcgtgcagctctgtggattaagtaggctgctgtgcctgaccctgagtc tcttggtaaagttaacccctcctctggcgacgctcactcagtgggtcatt cgctgcttgtgtaactgtgaaatacgcttacagggtgtaaccaatctgat ggtctttttaaggttgaagctcttgagaagttggtagagctgactgagaa gctgtttgagtgtgacagagaccagatgtactacaacttactgaagctat acagtaagtgacgcgccttgcctgcttgcactctggtctgcagaggccac agtggggaaaggaatgtttgggcttggaagaagt	gaattcttctcatttgtttatggttcgttgcgtcacttctctccatgaac atcccctcttgcactgttaactgtgcgtgagttcaccgtcacctttaacc ttcctgttcaacagcctagagcttgtcacacagaggggagagaaagaaca tgtgacaattacagatataaaaccacaaccctagatttaacagtatgaag tgtgtcagacccacgtgagaaggactcagtggccgacattctcagacagt ggctaaaggattctccatttccttgaaaccagacactaggtgaaccatgt gcacttccctgtcagtagcgatgcttgactggacaggactaagtcatcat gactgcctctctgtatccccttccagctggccacagagaagcacacatac tatctgacggcggattctcccaatatactggaagaatggatcaaagtgtt acagagcgttctgcgagtacaagctgcgaaccctctttgcctgcagcctg agggcaaacccgcagtaaagggcttgctcaccaaggtaggacccttgtcc tcggcagcatcctaggctgctgctttggtgagtgcgatgcatcatgaatg gtgaagctcagatagtaaatctatatctaatattctgttttgggggtaag atagctcaaagtgctttctgccaagcctgaaggtcttgaatgtgtgtgtg tgagtgagtgagagagagagagagagaga
quality values	Open. Hide. 58 36 27 26 54 28 14 54 62 54 29 62 62 62 62 62 30 26 37 41 62 62 62 62 62 62 62 62 62 62 62 49 22 24 18 19 18 16 23 23 24 23 18 25 23 46 30 51 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 54 62 49 39 24 43 49 43 36 30 22 23 27 21 25 28 28 43 46 62 62 62 62 62 62 62 62 62 59 62 62 62 62 42 54 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 54 49 49 54 62 62 62 62 62 62 62 59 54 54 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 59 59 62 62 54 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 51 54 46 46 51 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 50 34 45 56 45 31 56 56 62 62 62 62 62 62 62 59 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 62 62 62 56 62 62 54 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 47 62 62 62 62 49 37 54 62 62 54 62 28 42 21 13 18 27 62 62 48 54 42 62 62 62 62 62 62 62 62 62 62 54 49 47 54 54 54 52 41 58 58 58 54 42 58 54 36 41 54 58 58 58 45 54 58 52 58 58 54 58 54 58 58 58 58 58 58 58 42 58 58 54 58 58 49 54 58 58 54 52 52 49 48 58 58 54 54 46 33 40 58 58 54 58 34 38 45 33 45 23 58 51 50 58 45 58 39 45 45 49 53 58 54 47 47 43 30 34 12 23 7 12 13 24 51 50 42 51 50 38 50 51 32 28 50 48 23 49 58 51 54 50 49 50 58 40 50 50 40 51 34 53 41 58 9 20 26 22 41 49 37 32 50 36 37 58 47 46 52 52 50 35 29 32 20 25 7 20 27 26 50 40 41 32 58 40 29 39 41 39 35 12 32 42 44 15 30 35 50 31 24 34 31 41 41 32 46 14 37 32 38 51 46 40 39 41 49 25 18 29 38 39 37 33 28 32 21 23 18 29 42 30 13 33 40 42 26 52 41 39 30 27 33 9 33 17 19 14 6 9 19 7 9 10 53 30 34 20 28 17 33 23 25 32 16 46 32 24 31 47 12 11 47 16 45 15 9 13 13 9 10 15 20 10 25 11 19 40 17 14 11	Open. Hide. 46 49 62 47 62 62 62 62 62 62 59 44 13 11 11 13 10 13 13 18 16 23 22 12 18 23 18 24 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 59 49 62 59 59 62 62 59 62 62 62 62 62 62 59 41 34 36 35 23 30 28 31 23 21 30 34 27 34 42 46 62 62 54 62 59 59 59 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 54 62 62 62 59 54 62 62 62 54 54 54 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 59 62 62 62 59 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 54 54 62 59 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 54 54 62 59 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 56 54 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 59 59 62 54 59 62 62 62 56 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 56 59 49 49 46 45 35 56 50 46 46 51 62 62 62 62 62 62 62 62 59 59 62 59 62 62 62 59 43 45 43 29 28 32 38 56 50 46 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 44 62 62 62 62 62 62 62 56 56 62 56 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 56 62 62 56 47 38 38 38 56 56 62 54 47 62 62 62 62 62 62 54 62 62 62 62 62 54 54 62 62 62 62 62 62 53 62 62 62 62 62 62 46 62 47 54 62 62 62 62 62 62 62 47 49 52 52 54 48 58 58 58 58 58 58 45 36 48 52 44 48 52 54 54 44 52 52 52 58 52 54 58 47 54 52 46 54 52 58 45 54 58 58 58 41 32 58 51 54 54 54 58 54 39 58 39 39 52 58 58 43 54 58 49 37 54 58 58 37 45 58 53 35 46 58 53 45 51 49 49 50 45 43 49 58 50 51 54 58 58 42 25 45 48 51 58 58 36 25 33 15 48 50 42 58 58 54 58 58 39 46 46 50 38 50 35 49 35 52 35 17 14 19 11 15 31 40 50 49 51 50 50 50 46 41 23 43 33 47 50 51 54 46 40 19 36 10 13 13 10 12 35 32 52 51 50 42 30 41 49 52 52 50 50 54 58 21 50 51 50 40 53 53 54 19 51 21 39 13 30 9 27 9 13 9 9 9 19 12 14 12 6

Alignment Information

BAC End 1

BAC End 2

seq1: chr17_85130406_85131237
seq2: B6Ng01-173J13.b_47_880 (reverse)

seq1  ACTTCTTCCAAGCCC-AACATTCC-TTCCCCACTGTGGCCTCTGCAGACC  48
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  ACTTCTTCCAAGCCCAAACATTCCTTTCCCCACTGTGGCCTCTGCAGACC  50

seq1  AGAGTGCAAGCAGGCAAGGCGCGTCACTTACTGTATAGCTTCAGTAAGTT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCAAGCAGGCAAGGCGCGTCACTTACTGTATAGCTTCAGTAAGTT  100

seq1  GTAGTACATCTGGTCTCTGTCACACTCAAACAGCTTCTCAGTCAGCTCTA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTACATCTGGTCTCTGTCACACTCAAACAGCTTCTCAGTCAGCTCTA  150

seq1  CCAACTTCTCAAGAGCTTCAACCTTAAAAAGACCATCAGATTGGTTACAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTCTCAAGAGCTTCAACCTTAAAAAGACCATCAGATTGGTTACAC  200

seq1  CCTGTAAGCGTATTTCACAGTTACACAAGCAGCGAATGACCCACTGAGTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAGCGTATTTCACAGTTACACAAGCAGCGAATGACCCACTGAGTG  250

seq1  AGCGTCGCCAGAGGAGGGGTTAACTTTACCAAGAGACTCAGGGTCAGGCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCGCCAGAGGAGGGGTTAACTTTACCAAGAGACTCAGGGTCAGGCA  300

seq1  CAGCAGCCTACTTAATCCACAGAGCTGCACGCGGACAAGTGGTTAGAACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCTACTTAATCCACAGAGCTGCACGCGGACAAGTGGTTAGAACA  350

seq1  ACAGGTCATCTGTGCACTGAGAATGAATGATGGAGGGAGCCGAGAGAAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCATCTGTGCACTGAGAATGAATGATGGAGGGAGCCGAGAGAAGG  400

seq1  CCCCTTCCTGACAGCACACGCCTCTCACTCTTCACACAACATGCGCACGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCTGACAGCACACGCCTCTCACTCTTCACACAACATGCGCACGG  450

seq1  CCAGCTTGCTCACACTAGCAGAGGAAGGGCAGGTGAAAACTTCCAGGGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTGCTCACACTAGCAGAGGAAGGGCAGGTGAAAACTTCCAGGGCC  500

seq1  CAGACCAGCACTCTTAGGACTTCTAATGTCCCCTGGGGCCATAAAGCAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAGCACTCTTAGGACTTCTAATGTCCCCTGGGGCCATAAAGCAGG  550

seq1  AGGGCACTTATTTGGAGAAGCACTGAGGGAACACGGCGTCCACAAGGGCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACTTATTTGGAGAAGCACTGAGGGAACACGGCGTCCACAAGGGCC  600

seq1  GCTCGTCAACTCCCCGAAGGCTTCAGATACTCACTCACACGTTCCTGAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGTCAACTCCCCGAAGGCTTCAGATACTCACTCACACGTTCCTGAGT  650

seq1  GTTAGTGCTTCAGACATCAGAAATCAAATACCAACCTGATTACTGGCAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGCTTCAGACATCAGAAATCAAATACCAACCTGATTACTGGCAAT  700

seq1  GCATCGATCACAAAACCACTGGAGTCTTGTAGGCCGAGCTCTAATGCCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGATCACAAAACCACTGGAGTCTTGTAGGCCGAGCTCTAATGCCTG  750

seq1  GAGTCTATAAGACAGAACCACCACACGACATGTAAGACTCGGCTCAGTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTATAAGACAGAACCACCACACGACATGTAAGACTCGGCTCAGTTC  800

seq1  CCCCTCGAGGTAGTATATTCCCTCTAATGAATTC  832
      ||||||||||||||||||||||||||||||||||
seq2  CCCCTCGAGGTAGTATATTCCCTCTAATGAATTC  834

seq1: chr17_84976122_84976848
seq2: B6Ng01-173J13.g_70_798

seq1  GAATTCTTCTCATTTGTTTATGGTTCGTTGCGTCACTTCTCTCCATGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCATTTGTTTATGGTTCGTTGCGTCACTTCTCTCCATGAAC  50

seq1  ATCCCCTCTTGCACTGTTAACTGTGCGTGAGTTCACCGTCACCTTTAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTCTTGCACTGTTAACTGTGCGTGAGTTCACCGTCACCTTTAACC  100

seq1  TTCCTGTTCAACAGCCTAGAGCTTGTCACACAGAGGGGAGAGAAAGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTCAACAGCCTAGAGCTTGTCACACAGAGGGGAGAGAAAGAACA  150

seq1  TGTGACAATTACAGATATAAAACCACAACCCTAGATTTAACAGTATGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAATTACAGATATAAAACCACAACCCTAGATTTAACAGTATGAAG  200

seq1  TGTGTCAGACCCACGTGAGAAGGACTCAGTGGCCGACATTCTCAGACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAGACCCACGTGAGAAGGACTCAGTGGCCGACATTCTCAGACAGT  250

seq1  GGCTAAAGGATTCTCCATTTCCTTGAAACCAGACACTAGGTGAACCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAGGATTCTCCATTTCCTTGAAACCAGACACTAGGTGAACCATGT  300

seq1  GCACTTCCCTGTCAGTAGCGATGCTTGACTGGACAGGACTAAGTCATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCCCTGTCAGTAGCGATGCTTGACTGGACAGGACTAAGTCATCAT  350

seq1  GACTGCCTCTCTGTATCCCCTTCCAGCTGGCCACAGAGAAGCACACATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCTCTCTGTATCCCCTTCCAGCTGGCCACAGAGAAGCACACATAC  400

seq1  TATCTGACGGCGGATTCTCCCAATATACTGGAAGAATGGATCAAAGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGACGGCGGATTCTCCCAATATACTGGAAGAATGGATCAAAGTGTT  450

seq1  ACAGAGCGTTCTGCGAGTACAAGCTGCGAACCCTCTTTGCCTGCAGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCGTTCTGCGAGTACAAGCTGCGAACCCTCTTTGCCTGCAGCCTG  500

seq1  AGGGCAAACCCGCAGTAAAGGGCTTGCTCACCAAGGTAGGACCCTTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAAACCCGCAGTAAAGGGCTTGCTCACCAAGGTAGGACCCTTGTCC  550

seq1  TCGGCAGCATCCTAGGCTGCTGCTTTGGTGAGTGCGATGCATCATGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCAGCATCCTAGGCTGCTGCTTTGGTGAGTGCGATGCATCATGAATG  600

seq1  GTGAAGCTCAGATAGTAAATCTATATCTAATATTCTG-TTTGGGGGTAAG  649
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTGAAGCTCAGATAGTAAATCTATATCTAATATTCTGTTTTGGGGGTAAG  650

seq1  ATAGCTCAAAGTGCTTTCTGCCAAGCCTGAAGGTC-TGAATGTGTGTGTG  698
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATAGCTCAAAGTGCTTTCTGCCAAGCCTGAAGGTCTTGAATGTGTGTGTG  700

seq1  TGAGTGAGTGAGAGAGAGAGAGAGAGAGA  727
      |||||||||||||||||||||||||||||
seq2  TGAGTGAGTGAGAGAGAGAGAGAGAGAGA  729

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Alignment Information