BAC Information

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BAC

Clone NameB6Ng01-175A16
Chromosome17 (Build37)
Map Location 64,553,551 - 64,554,695
singlet/doubletsinglet
Overlap genenone
Upstream geneFbxl17, Ppia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2, LOC669778
Downstream genePja2, LOC100043582, Man2a1, 4930583I09Rik, LOC100043871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175A16.bB6Ng01-175A16.g
ACCGA002953GA002954
length9461,156
definitionB6Ng01-175A16.b B6Ng01-175A16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatgaaaatgaaggcacaacatgcccaaacttatgggacacaat
gaaagcagtgcttagaggaaagttcctagcactaagtgacttcataaaga
aattggagagatctcatactagcaacttaactgcatacctgaaaactcta
aaacaaaaagaaacaaacagacccaagaggattagatggcaggaaagaat
caaacttggaactgaaatcaataaatttgaaacaaagagaaaaaattcaa
agaatcaacaaaccaagagctggttcttgagaaaatcaagaagatagaca
aacctttagtcaaactaaaaggcagagagacaatatccaaattaacaaaa
tcagaaatgaaaagggggacatgacaatagtcaccaaggaaatccaaaga
atcattacatcatatttcaaaagcctatactccacaaaattggaaaatct
agatgaaaaactctacctcaagactctgatataccactcctgggcattta
cccaaaaaatgctccatcataccacaaggacacatgctccactgtgttca
tagcagctttattcatagtaaccataaactggaaacaaaccagatatcct
tcaaccaaaaaatggataaaaaaaaatgttgttcatttacacaatggaat
ggtactcagctataaaaaacaagaacatcatgaaatttgcagggaaatag
ttggaaccagaaaacatcatcctgagtgaggtaacccagactccaaagga
catgtatggggtgtatttactgataagtggatataagccataaagtacag
gatacccacactgcaatccacagaccaaaaaagccaaataacaaggacag
cccaagggaggatgattgaatctcactcagaagagggcaatagaatagta
tcagagttggagggagggacagaactgggtgggggaagggatggtg

gaattccattcagtcatcaagaaatatgaattataaaatttgcagaaaaa
tttgaactgaaaaagattccagaaagcaaggtaagccaggctcggaaaga
cgcatgcgtgcattctctctcatgtgccatccttggccactagctgataa
ctacttgtgtctcagagggagtaaatgtggacacagaccaggaaacttga
caggacccacgagatcatgacagcagcgtagggatggaggaaagcaaatc
aagattaacccaaacaatgccagcctgcagaggacgctgcaagccctttc
ttaccctggcatcatctaacaaacagagcatgcccccacaaagtccttta
agtacaaacagaaagagggcatggttggctgcagaagaccatatcctgta
tagttgatgcttctggcctctcctcagctccacaacccactgttattcct
agaagtgctgctgcttttctcttaaaaaaaaaaaaagtatctctaattga
aatagaattacatcactatcccctacctcaaaccactcccatgctctttt
tcactgattagtgttacatgtatgtatatgtaaatatatacatacatatg
cttattcgagtatgaatatatatgcacaagtatgccagtgagactgccat
tgttccaggcttgtctgtgtggctgtttctatgaaagacagtttcacgca
gacgtcttggcatgccagctctggtttttccatcccctctccctcagtgt
tcactaagtcccagatgcagagcggtgatacagatgtagccactggagct
gggctccccatgatctgatctctgcgttgtatccagttgtggttctctgt
ggcggtctccttttgctgtagagagacgcttcttggcagaggggtggtag
ccacactttacccaagaaaaggtggtttgctttacaaaatggcttgccag
cctcgggggctagaaggaggcttttatgtgggtcatgcgaacagttagtg
gggttgggggtagcctgcttcctttcctttcttaagatgtctgttcaatt
ccctaacttaagaaaggtgtgacctaatccccattgcttttgggcaagct
gctggctggtcacccttaccctatgctgattttcctcgagccaattgata
taaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_64553551_64554695
seq2: B6Ng01-175A16.g_64_1219

seq1  GAATTCCATTCAGTCATCAAGAAATATGAATTATAAAATTTGCAGAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCAGTCATCAAGAAATATGAATTATAAAATTTGCAGAAAAA  50

seq1  TTTGAACTGAAAAAGATTCCAGAAAGCAAGGTAAGCCAGGCTCGGAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTGAAAAAGATTCCAGAAAGCAAGGTAAGCCAGGCTCGGAAAGA  100

seq1  CGCATGCGTGCATTCTCTCTCATGTGCCATCCTTGGCCACTAGCTGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGCGTGCATTCTCTCTCATGTGCCATCCTTGGCCACTAGCTGATAA  150

seq1  CTACTTGTGTCTCAGAGGGAGTAAATGTGGACACAGACCAGGAAACTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGTGTCTCAGAGGGAGTAAATGTGGACACAGACCAGGAAACTTGA  200

seq1  CAGGACCCACGAGATCATGACAGCAGCGTAGGGATGGAGGAAAGCAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCCACGAGATCATGACAGCAGCGTAGGGATGGAGGAAAGCAAATC  250

seq1  AAGATTAACCCAAACAATGCCAGCCTGCAGAGGACGCTGCAAGCCCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAACCCAAACAATGCCAGCCTGCAGAGGACGCTGCAAGCCCTTTC  300

seq1  TTACCCTGGCATCATCTAACAAACAGAGCATGCCCCCACAAAGTCCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTGGCATCATCTAACAAACAGAGCATGCCCCCACAAAGTCCTTTA  350

seq1  AGTACAAACAGAAAGAGGGCATGGTTGGCTGCAGAAGACCATATCCTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAACAGAAAGAGGGCATGGTTGGCTGCAGAAGACCATATCCTGTA  400

seq1  TAGTTGATGCTTCTGGCCTCTCCTCAGCTCCACAACCCACTGTTATTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGATGCTTCTGGCCTCTCCTCAGCTCCACAACCCACTGTTATTCCT  450

seq1  AGAAGTGCTGCTGCTTTTCTCTTAAAAAAAAAAAAAGTATCTCTAATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGCTGCTGCTTTTCTCTTAAAAAAAAAAAAAGTATCTCTAATTGA  500

seq1  AATAGAATTACATCACTATCCCCTACCTCAAACCACTCCCATGCTCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATTACATCACTATCCCCTACCTCAAACCACTCCCATGCTCTTTT  550

seq1  TCACTGATTAGTGTTACATGTATGTATATGTAAATATATACATACATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGATTAGTGTTACATGTATGTATATGTAAATATATACATACATATG  600

seq1  CTTATTCGAGTATGAATATATATGCACAAGTATGCCAGTGAGACTGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCGAGTATGAATATATATGCACAAGTATGCCAGTGAGACTGCCAT  650

seq1  TGTTCCAGGCTTGTCTGTGTGGCTGTTTCTATGAAAGACAGTTTCACGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAGGCTTGTCTGTGTGGCTGTTTCTATGAAAGACAGTTTCACGCA  700

seq1  GACGTCTTGGCATGCCAGCTCTGGTTTTTCCATCCCCTCTCCCTCAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCTTGGCATGCCAGCTCTGGTTTTTCCATCCCCTCTCCCTCAGTGT  750

seq1  TCACTAAGTCCCAGATGCAGAGCGGTGATACAGATGTAGCCACTGGAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAGTCCCAGATGCAGAGCGGTGATACAGATGTAGCCACTGGAGCT  800

seq1  GGGCTCCCCATGATCTGATCTCTGCGTTGTATCCAGTTGTGGTTCTCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCCCATGATCTGATCTCTGCGTTGTATCCAGTTGTGGTTCTCTGT  850

seq1  GGCGGTCTCCTTTTGCTGTAGAGAGACGCTTCTTGGCAGAGGGGTGGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGTCTCCTTTTGCTGTAGAGAGACGCTTCTTGGCAGAGGGGTGGTAG  900

seq1  CCACAC-TTACCCAAG-AAAGGTGGTTTGCTTACAAAAATGGCTTGCCAG  948
      |||||| ||||||||| |||||||||||||||   |||||||||||||||
seq2  CCACACTTTACCCAAGAAAAGGTGGTTTGCTTTACAAAATGGCTTGCCAG  950

seq1  CCTC-GGGGCTAGAAGGAGGCTTTTATGTGGGTC-TGCGAACAG-TAGTG  995
      |||| ||||||||||||||||||||||||||||| ||||||||| |||||
seq2  CCTCGGGGGCTAGAAGGAGGCTTTTATGTGGGTCATGCGAACAGTTAGTG  1000

seq1  GG--TTGGGGTAGCCTGCTTTCCTTCC-TTCTTAAGATGTCTGTTTCCAT  1042
      ||  | |||||||||||||| | |||| ||||||||||||||| ||| ||
seq2  GGGTTGGGGGTAGCCTGCTTCCTTTCCTTTCTTAAGATGTCTG-TTCAAT  1049

seq1  T-CCTAACTT-AGAAA-GTGTGACCTTATTCCCCATTGCTTTTGG--CAG  1087
      | |||||||| ||||| |||||||| || ||||||||||||||||   ||
seq2  TCCCTAACTTAAGAAAGGTGTGACC-TAATCCCCATTGCTTTTGGGCAAG  1098

seq1  CTGCTGGGCTTGTCACC--TAACCTATGCTGATTTTTCTCTCGAGC--AA  1133
      ||||| |||| ||||||  || ||||||||||||||   |||||||  | 
seq2  CTGCT-GGCTGGTCACCCTTACCCTATGCTGATTTT--CCTCGAGCCAAT  1145

seq1  TGATAATAAAAT  1145
      |||| |||||||
seq2  TGAT-ATAAAAT  1156


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