BAC Information

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BAC

Clone NameB6Ng01-175N22
Chromosome17 (Build37)
Map Location 60,655,415 - 60,778,629
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043542, LOC100043549
Downstream geneLOC433129, EG620725
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175N22.bB6Ng01-175N22.g
ACCGA003560GA003561
length1,029859
definitionB6Ng01-175N22.b B6Ng01-175N22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,777,608 - 60,778,629)(60,655,415 - 60,656,269)
sequence
gaattcttgcttaaattgtttttatgctttgtcaagaaatagtttattat
acttctgaggctctgtttatgtttccaatgattttctaccagtctatgtt
taattctctctagagcaacatttttgagtcttactataatatcttgtgtc
ttgagatcaggtaaagtgatctttaatatcagtttccaacttgacataag
ctaaaataacctgagcagaagaaatgaaggaacctcaattgagaagtgaa
tttaaatatgatatatatcaaaaccaagaaatactttaagattaacataa
aattgaagtagaggaatacacattccaaataaactaaaattactttgaaa
aataaatcaaccaggtttccctatagataagtctgggtggagtttttatt
tatttatgattgatgtggagcagcccagcgcactgcatgcactgcacaca
tgagaaggtggctctacttatgtaataaagcaaattgtgtaaaccatgga
aagaaaacaattcagttagtagccctcattcatgtctctcctttagtttc
tgcttccagatacctggttgagatgctgccctgacattcttcaatgatga
attgtgatatagaaatgaaatctaagtaaatccattcttacaagcttgta
tttggtcagaatgttctgtcaatgcaatagaagtcacatgacaacagata
cgaattgtcttatatcaacatggatatttcactataaattttattattca
tgggttaatgttttaattgacagaatgattttgtaaatcaataactgatt
ttgaaattaataaaatcataagggcattattaattttatgggtgaaattg
tcataactattactattttttatgtattattgtcttgggaactttcagac
atgaatatagttttatgaattatcaaattcacttccattctttttcctca
catttctcacctaccttcaacactaccttctttcagaatttcatgtttcc
tttaaaatccatccaatgaaatctctaca

gaattctttacccttgttttcaagagactacctggaagattgagctcact
aatgctatcccagtaccttgagataacatggtcgcttgtgtgttagatgc
aaccaatttttaaaatggaaacatgtttactcatgagcatcacgtttatg
tacatgccactgcaaacctcaatagttaaacaatgaaccttcatatgtaa
ggtatttgttcctatctatgtacatatatgcagctgttctatatatgttc
tatagacataggattagagtgcctgggtcttaggacaggcttaaattcag
attagcaaagacaagataattttatacccagtgtcatcttcatttctcca
catcttaaaataacaatttataattttaaacatttcaatattcaggggtg
taagttctgtctcaatactgtgttcatattacaaattaaattacagaaaa
taagtttacacatatattgtgcgcttttatcaccatttaagtgaaaacat
gaagtatattcaggactccagcaaattatatgaataagagtaaataatgt
gactaatatcaatgccattctgaaatttattaccatcgattctcttttta
attttctttttttaaaaaattttttaaattaggtatttatttcatttaca
tttccaatgctatcccaaaagtcccccacctgctccccgacccactcccc
cacctacccactccctctccttggacctggcgttcccctgtactgaggca
tataaagtttggacctctctttccagtgatggctgactaggccatctttt
gatacatgtgcagctagagtcaaagagctccacgatactgatttaggttc
attattgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_60777608_60778629
seq2: B6Ng01-175N22.b_50_1078 (reverse)

seq1  TGTAGA---TTCATTGGATGGATTTAAAAGG-AACATGAAAATCTGAAGG  46
      ||||||   |||||||||||||||| ||||| ||||||||| |||||| |
seq2  TGTAGAGATTTCATTGGATGGATTTTAAAGGAAACATGAAATTCTGAAAG  50

seq1  AAAGGTAGTGTTGAAGGTAGGTGAGAAATGTGAGGAAAAAGAATGGAAAG  96
       ||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  -AAGGTAGTGTTGAAGGTAGGTGAGAAATGTGAGGAAAAAGAATGG-AAG  98

seq1  TGAATTTGAT-ATTCATAAAACTATATTCATGTCTG-AAGTT-CCAAGAC  143
      |||||||||| ||||||||||||||||||||||||| ||||| |||||||
seq2  TGAATTTGATAATTCATAAAACTATATTCATGTCTGAAAGTTCCCAAGAC  148

seq1  AATAATACATAAAAAATAGTAATAGTTATGACAA-TTCACCCATAAAATT  192
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATAATACATAAAAAATAGTAATAGTTATGACAATTTCACCCATAAAATT  198

seq1  AATAATG-CCTTATGATTTTATTAATTTCAAAATCAGTTATTGATTTACA  241
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGCCCTTATGATTTTATTAATTTCAAAATCAGTTATTGATTTACA  248

seq1  AAATCATTCTGTCAATTAAAACATTAACCCATGAATAATAAAATTTATAG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTCTGTCAATTAAAACATTAACCCATGAATAATAAAATTTATAG  298

seq1  TGAAATATCCATGTTGATATAAGACAATTCGTATCTGTTGTCATGTGACT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATCCATGTTGATATAAGACAATTCGTATCTGTTGTCATGTGACT  348

seq1  TCTATTGCATTGACAGAACATTCTGACCAAATACAAGCTTGTAAGAATGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGCATTGACAGAACATTCTGACCAAATACAAGCTTGTAAGAATGG  398

seq1  ATTTACTTAGATTTCATTTCTATATCACAATTCATCATTGAAGAATGTCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTAGATTTCATTTCTATATCACAATTCATCATTGAAGAATGTCA  448

seq1  GGGCAGCATCTCAACCAGGTATCTGGAAGCAGAAACTAAAGGAGAGACAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCATCTCAACCAGGTATCTGGAAGCAGAAACTAAAGGAGAGACAT  498

seq1  GAATGAGGGCTACTAACTGAATTGTTTTCTTTCCATGGTTTACACAATTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGGGCTACTAACTGAATTGTTTTCTTTCCATGGTTTACACAATTT  548

seq1  GCTTTATTACATAAGTAGAGCCACCTTCTCATGTGTGCAGTGCATGCAGT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATTACATAAGTAGAGCCACCTTCTCATGTGTGCAGTGCATGCAGT  598

seq1  GCGCTGGGCTGCTCCACATCAATCATAAATAAATAAAAACTCCACCCAGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGGGCTGCTCCACATCAATCATAAATAAATAAAAACTCCACCCAGA  648

seq1  CTTATCTATAGGGAAACCTGGTTGATTTATTTTTCAAAGTAATTTTAGTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTATAGGGAAACCTGGTTGATTTATTTTTCAAAGTAATTTTAGTT  698

seq1  TATTTGGAATGTGTATTCCTCTACTTCAATTTTATGTTAATCTTAAAGTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGAATGTGTATTCCTCTACTTCAATTTTATGTTAATCTTAAAGTA  748

seq1  TTTCTTGGTTTTGATATATATCATATTTAAATTCACTTCTCAATTGAGGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGTTTTGATATATATCATATTTAAATTCACTTCTCAATTGAGGT  798

seq1  TCCTTCATTTCTTCTGCTCAGGTTATTTTAGCTTATGTCAAGTTGGAAAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCATTTCTTCTGCTCAGGTTATTTTAGCTTATGTCAAGTTGGAAAC  848

seq1  TGATATTAAAGATCACTTTACCTGATCTCAAGACACAAGATATTATAGTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTAAAGATCACTTTACCTGATCTCAAGACACAAGATATTATAGTA  898

seq1  AGACTCAAAAATGTTGCTCTAGAGAGAATTAAACATAGACTGGTAGAAAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAAAAATGTTGCTCTAGAGAGAATTAAACATAGACTGGTAGAAAA  948

seq1  TCATTGGAAACATAAACAGAGCCTCAGAAGTATAATAAACTATTTCTTGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGAAACATAAACAGAGCCTCAGAAGTATAATAAACTATTTCTTGA  998

seq1  CAAAGCATAAAAACAATTTAAGCAAGAATTC  1022
      |||||||||||||||||||||||||||||||
seq2  CAAAGCATAAAAACAATTTAAGCAAGAATTC  1029


seq1: chr17_60655415_60656269
seq2: B6Ng01-175N22.g_65_923

seq1  GAATTCTTTACCCTTGTTTTCAAGAGACTACCTGGAAGATTGAGCTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACCCTTGTTTTCAAGAGACTACCTGGAAGATTGAGCTCACT  50

seq1  AATGCTATCCCAGTACCTTGAGATAACATGGTCGCTTGTGTGTTAGATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTATCCCAGTACCTTGAGATAACATGGTCGCTTGTGTGTTAGATGC  100

seq1  AACCAATTTTTAAAATGGAAACATGTTTACTCATGAGCATCACGTTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATTTTTAAAATGGAAACATGTTTACTCATGAGCATCACGTTTATG  150

seq1  TACATGCCACTGCAAACCTCAATAGTTAAACAATGAACCTTCATATGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCCACTGCAAACCTCAATAGTTAAACAATGAACCTTCATATGTAA  200

seq1  GGTATTTGTTCCTATCTATGTACATATATGCAGCTGTTCTATATATGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTGTTCCTATCTATGTACATATATGCAGCTGTTCTATATATGTTC  250

seq1  TATAGACATAGGATTAGAGTGCCTGGGTCTTAGGACAGGCTTAAATTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACATAGGATTAGAGTGCCTGGGTCTTAGGACAGGCTTAAATTCAG  300

seq1  ATTAGCAAAGACAAGATAATTTTATACCCAGTGTCATCTTCATTTCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAAAGACAAGATAATTTTATACCCAGTGTCATCTTCATTTCTCCA  350

seq1  CATCTTAAAATAACAATTTATAATTTTAAACATTTCAATATTCAGGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAAAATAACAATTTATAATTTTAAACATTTCAATATTCAGGGGTG  400

seq1  TAAGTTCTGTCTCAATACTGTGTTCATATTACAAATTAAATTACAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCTGTCTCAATACTGTGTTCATATTACAAATTAAATTACAGAAAA  450

seq1  TAAGTTTACACATATATTGTGCGCTTTTATCACCATTTAAGTGAAAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTACACATATATTGTGCGCTTTTATCACCATTTAAGTGAAAACAT  500

seq1  GAAGTATATTCAGGACTCCAGCAAATTATATGAATAAGAGTAAATAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATATTCAGGACTCCAGCAAATTATATGAATAAGAGTAAATAATGT  550

seq1  GACTAATATCAATGCCATTCTGAAATTTATTACCATCGATTCTCTTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATATCAATGCCATTCTGAAATTTATTACCATCGATTCTCTTTTTA  600

seq1  ATTTTCTTTTTTTAAAAAATTTTTTAAATTAGGTATTTATTTCATTTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTTTTTAAAAAATTTTTTAAATTAGGTATTTATTTCATTTACA  650

seq1  TTTCCAATGCTATCCCAAAAGTCCCCCACCTGCTCCCCGACCCACTCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATGCTATCCCAAAAGTCCCCCACCTGCTCCCCGACCCACTCCCC  700

seq1  CACCTACCCACTCCCTCTCCTTGGACCTGGCGTTCCCCTGTACTGAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACCCACTCCCTCTCCTTGGACCTGGCGTTCCCCTGTACTGAGGCA  750

seq1  TATAAAGTTTGGACCTCTCTTTCCAGTGATGGCTGACTAGGCCATCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTTTGGACCTCTCTTTCCAGTGATGGCTGACTAGGCCATCTTTT  800

seq1  GATACATGTGCAGCTAGAGTC-AAGAGCTCCACGATACTGATT--AGTTC  847
      ||||||||||||||||||||| |||||||||||||||||||||   ||||
seq2  GATACATGTGCAGCTAGAGTCAAAGAGCTCCACGATACTGATTTAGGTTC  850

seq1  A-TATTGTT  855
      | |||||||
seq2  ATTATTGTT  859


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