BAC Information

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BAC

Clone NameB6Ng01-175O05
Chromosome17 (Build37)6 (Build37)
Map Location 30,691,510 - 30,691,944101,635,003 - 101,636,138
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3, Btbd9, EG623169
Downstream geneGlo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175O05.bB6Ng01-175O05.g
ACCGA003572GA003573
length1,1751,140
definitionB6Ng01-175O05.b B6Ng01-175O05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(30,691,510 - 30,691,944)(101,635,003 - 101,636,138)
sequence
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggaaggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagattgccatatccagggatccaccccataatc
agcatccaaatgctgacaccattgcatacactagcaagattttattggaa
ggacccagatatagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccaaggagctaaagggatctgcaaccct
ataggtggacacattatgaactaccagtaccccggagctctgactctagc
tgcatattatatcaaaagaattgctagtcgcattcactgggaaagaagag
gcccattggactgcaaactttattgcccagtacagggcaaacctcaggtc
aaaggggaattgtggtgccaggagg
gaattcacgatgggcagcatggcccttcttgcaaagactgtgcactgtgt
tagtcactcagggatcatcctttggtgaattaaattaaaatggactcagt
tgtcagaaactattgaataatgtggaattctgtatatttaaaatattacc
ttttattatgcatatctacttcaaaaccaaatagctgtgttccataaaca
aatatgttttagagtacaagtattcttttttttttaatggaatgaaaatg
agtctataaagcatttatgacaaagttcagaaattaaggttaatataaag
aggttgagagcaatcatcaggtaagttaaaatttagcataggagatgaaa
gacaaagatggggaaataaaatgaagagagatgtggggcagaaagggatt
cagaaggaacattaacacttcgtgtaataaagaggaataaaggaggatgc
ccgcgcatcctgcagtggtcgtaactgacagaggctcttcagttcacact
agagaaaactgataataaataaacgtcagtcagcagatctgtgggtgttc
tggacttttaaaagatccataaatcaagtgcctataatgtaagtttcagg
atgagggacgcacatgtggggactgcatctaatttgctccccgtcctcag
gaaaatatgtgccatgtctattgcaaaacaaaaacaagtccagcagagct
atttaccatacaccagtgaaaatcaagatcaacagaaacctccttttaaa
aatactgttagaggaatttaggagcaaggagactttcattatttgcattt
ctttacagattgcctagtgcctccgttagtgcatgcttgtttccttcagc
aaatcctaatgagaaacgatatgcatatgcatgatcttcgtgcgcagtgc
ttcatgggacgctttatgcagatattttccagcttcctgtcagcctcact
gagtagatgagcggggtgaaggttctgtagagacgtcagcccattaccgg
gctcttgttgagtacaaaggagtcaaggtcatcattgttcagatactacc
taccaaggacctatgacattgcctttggaattctgaaaaaaaccttgctc
caattctctgctctcaaaaccgaccaggtattttgggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_30691510_30691944
seq2: B6Ng01-175O05.b_921_1220 (reverse)

seq1  CCTCCTGGCACCACAATCACTACTCAACACTGAACTCATCTCTTTTTTTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTTACTTTTTATTAGGTATTTTCCTCACTTACATTTCCAATGCTAT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCCAAAAGTCCCCCATACCCTCCCACCCACTCCCCTAC--CCACC-CACT  147
                                       ||| |   |||| || |
seq2  ---------------------------------CCTCCTGGCACCACAAT  17

seq1  CCCACTTTTTGGCCCTGA-CATTCCCCTGTACTGGGGCATATAAAGTTTG  196
       || ||||   | |||||   || ||||||||| ||||| ||||||||||
seq2  TCCCCTTT---GACCTGAGGTTTGCCCTGTACT-GGGCA-ATAAAGTTTG  62

seq1  CAAGTCCAATGGGCCTC-TCTTT-CTAGTGATGGCCGGCTAGGCCATCTT  244
      | ||||||||||||||| ||||| | |||||  | || ||||    ||||
seq2  C-AGTCCAATGGGCCTCTTCTTTCCCAGTGAATG-CGACTAGCAATTCTT  110

seq1  TTGATA-CATATGCAGCTAGAGTCAAGAGCTCC-GGGTACTGGTTAGTTC  292
      ||||||  |||||||||||||||| |||||||| ||||||||| ||||||
seq2  TTGATATAATATGCAGCTAGAGTC-AGAGCTCCGGGGTACTGG-TAGTTC  158

seq1  ATAATGTTGTTCTACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTA  342
      |||||||   || |||||||||||||||||||||||||||||||||| ||
seq2  ATAATGT--GTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTA  206

seq1  CTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGAC  392
      ||||||||||||||||||||||| ||||| ||||||||||| ||||||||
seq2  CTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGAC  256

seq1  TGTGAGCAT-AACTTCTGTGTTTGCTAGGCCCCGGCCTAGTCTC  435
      |||||||||  ||||||||||||||||||||||||| |||||||
seq2  TGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTC  300

seq1: chr6_101635003_101636138
seq2: B6Ng01-175O05.g_64_1203

seq1  GAATTCACGATGGGCAGCATGGCCCTTCTTGCAAAGACTGTGCACTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGATGGGCAGCATGGCCCTTCTTGCAAAGACTGTGCACTGTGT  50

seq1  TAGTCACTCAGGGATCATCCTTTGGTGAATTAAATTAAAATGGACTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACTCAGGGATCATCCTTTGGTGAATTAAATTAAAATGGACTCAGT  100

seq1  TGTCAGAAACTATTGAATAATGTGGAATTCTGTATATTTAAAATATTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAAACTATTGAATAATGTGGAATTCTGTATATTTAAAATATTACC  150

seq1  TTTTATTATGCATATCTACTTCAAAACCAAATAGCTGTGTTCCATAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTATGCATATCTACTTCAAAACCAAATAGCTGTGTTCCATAAACA  200

seq1  AATATGTTTTAGAGTACAAGTATTCTTTTTTTTTTAATGGAATGAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTTTAGAGTACAAGTATTCTTTTTTTTTTAATGGAATGAAAATG  250

seq1  AGTCTATAAAGCATTTATGACAAAGTTCAGAAATTAAGGTTAATATAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATAAAGCATTTATGACAAAGTTCAGAAATTAAGGTTAATATAAAG  300

seq1  AGGTTGAGAGCAATCATCAGGTAAGTTAAAATTTAGCATAGGAGATGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGAGAGCAATCATCAGGTAAGTTAAAATTTAGCATAGGAGATGAAA  350

seq1  GACAAAGATGGGGAAATAAAATGAAGAGAGATGTGGGGCAGAAAGGGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGATGGGGAAATAAAATGAAGAGAGATGTGGGGCAGAAAGGGATT  400

seq1  CAGAAGGAACATTAACACTTCGTGTAATAAAGAGGAATAAAGGAGGATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGAACATTAACACTTCGTGTAATAAAGAGGAATAAAGGAGGATGC  450

seq1  CCGCGCATCCTGCAGTGGTCGTAACTGACAGAGGCTCTTCAGTTCACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGCATCCTGCAGTGGTCGTAACTGACAGAGGCTCTTCAGTTCACACT  500

seq1  AGAGAAAACTGATAATAAATAAACGTCAGTCAGCAGATCTGTGGGTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAACTGATAATAAATAAACGTCAGTCAGCAGATCTGTGGGTGTTC  550

seq1  TGGACTTTTAAAAGATCCATAAATCAAGTGCCTATAATGTAAGTTTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTTTAAAAGATCCATAAATCAAGTGCCTATAATGTAAGTTTCAGG  600

seq1  ATGAGGGACGCACATGTGGGGACTGCATCTAATTTGCTCCCCGTCCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGACGCACATGTGGGGACTGCATCTAATTTGCTCCCCGTCCTCAG  650

seq1  GAAAATATGTGCCATGTCTATTGCAAAACAAAAACAAGTCCAGCAGAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATGTGCCATGTCTATTGCAAAACAAAAACAAGTCCAGCAGAGCT  700

seq1  ATTTACCATACACCAGTGAAAATCAAGATCAACAGAAACCTCCTTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCATACACCAGTGAAAATCAAGATCAACAGAAACCTCCTTTTAAA  750

seq1  AATACTGTTAGAGGAATTTAGGAGCAAGGAGACTTTCATTATTTGCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGTTAGAGGAATTTAGGAGCAAGGAGACTTTCATTATTTGCATTT  800

seq1  CTTTACAGATTGCCTAGTGCCTCCGTTAGTGCATGCTTGTTTCCTTCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGATTGCCTAGTGCCTCCGTTAGTGCATGCTTGTTTCCTTCAGC  850

seq1  AAATCCTAATGAGAAACGATATGCATATGCATGATCTTCGTGCGCAGTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTAATGAGAAACGATATGCATATGCATGATCTTCGTGCGCAGTGC  900

seq1  TTCATGGGACGCTTTATGCAGATATTTTCCAGCTTCCTGTCAGCCTCACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGGACGCTTTATGCAGATATTTTCCAGCTTCCTGTCAGCCTCACT  950

seq1  GAGTAGATGAGCGGGGTGAAGGTTCTGTAGGAGACGTCAGCCAATTACC-  999
      ||||||||||||||||||||||||||||| |||||||||||| |||||| 
seq2  GAGTAGATGAGCGGGGTGAAGGTTCTGTA-GAGACGTCAGCCCATTACCG  999

seq1  GGCTC-TGTTGAGTACCAAAGAAGTCAAGGTCATTCATTGGTCAGGATAA  1048
      ||||| ||||||||| ||||| ||||||||||| |||||| ||| ||| |
seq2  GGCTCTTGTTGAGTA-CAAAGGAGTCAAGGTCA-TCATTGTTCA-GAT-A  1045

seq1  CTA-CTACCAGGAACTTATGACATTGCCTT--GGATTCTGAAAAA---CC  1092
      ||| |||||| | || ||||||||||||||  | |||||||||||   | 
seq2  CTACCTACCAAGGACCTATGACATTGCCTTTGGAATTCTGAAAAAAACCT  1095

seq1  TGCTCCCATTTCTCTGCTCTCAAAAACCAACA-GTA-TTTGGGTGG  1136
      |||| ||| |||||||||||||||| | | || ||| |||||||||
seq2  TGCT-CCAATTCTCTGCTCTCAAAACCGACCAGGTATTTTGGGTGG  1140