BAC Information

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BAC

Clone NameB6Ng01-177N02
Chromosome17 (Build37)
Map Location 33,818,082 - 33,968,990
singlet/doubletdoublet
Overlap geneHnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7
Upstream geneCyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1
Downstream geneCd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177N02.bB6Ng01-177N02.g
ACCGA004983GA004984
length659488
definitionB6Ng01-177N02.b B6Ng01-177N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,968,468 - 33,968,990)(33,818,082 - 33,818,575)
sequence
gaattctcctaggctggatggccatcaagtccagggatccacctgtccct
gcccccacaatgctgagattacaagtgtgcactagcagactcagctggag
ttacagactgtttaagtccccaactgagccgcagcatcttttttttttaa
agacttatttattttatgtatgtgagtacattgtcactgtcttcagacac
accagaaggcatcggatcccattacagatggttgtgagccaccatgtggt
tgctggaaattgaactcaggatcctagaagagaagtcagtgttcttaacc
actgagccatctctccagcctccctcagcatctttaaaaaatagtaataa
taataacataagcctcatgtggtggtgcatgcttttagtcccagcattta
aaaggcaggagcaggggcaggcaggtagatagatctctgtgagtctgaca
cctgcctgatctatagagttccaggattaacagactgtttctcagagaaa
ccctgtcttagacaaataaatagtgtcaagagggtgaggaggtggtctat
gtgtatgtaaatatatagtctacagagcaagttctaggatagccagggct
gtttctctgtagaaatcctgtcattcaggaaggaaaggaaggataatgag
gggtggggg
aggaataagagggagggggagtatggtaaattaagagaccaatctactgt
ggtgtttcagatcaaccaaagatacataagatcttgccttaacaaacaaa
aacaaaaacagtaggattatggtggctctctgtgaattccaggacagcca
aggctacatagacaaaccctgtcttaattccctctcatcaaaaaaaaacc
caaaataaaagtgcaacattatttttctttgttaataaacatctgccagg
catagtagagaacacctttaattctagcactgagaggtgatctctgagtt
tagagcaaacactatctagtttaaagcaaacatgatctaaagtgagaccc
tgcctcaacaaatataaattgagtacaaaaagatactaagacaaaaagcg
agttggtatacgttaagagcttaatatggaaggaccagtactgtgggtaa
caaatagttaatagtcatacatccaagtctgaataata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_33968468_33968990
seq2: B6Ng01-177N02.b_180_703 (reverse)

seq1  CCCCACCCCTCATTATCCTTCC-TTCCTTCCTGAATGACAGGATTTCTAC  49
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCCCACCCCTCATTATCCTTCCTTTCCTTCCTGAATGACAGGATTTCTAC  50

seq1  AGAGAAACAGCCCTGGCTATCCTAGAACTTGCTCTGTAGACTATATATTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACAGCCCTGGCTATCCTAGAACTTGCTCTGTAGACTATATATTT  100

seq1  ACATACACATAGACCACCTCCTCACCCTCTTGACACTATTTATTTGTCTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACATAGACCACCTCCTCACCCTCTTGACACTATTTATTTGTCTA  150

seq1  AGACAGGGTTTCTCTGAGAAACAGTCTGTTAATCCTGGAACTCTATAGAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGTTTCTCTGAGAAACAGTCTGTTAATCCTGGAACTCTATAGAT  200

seq1  CAGGCAGGTGTCAGACTCACAGAGATCTATCTACCTGCCTGCCCCTGCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGTGTCAGACTCACAGAGATCTATCTACCTGCCTGCCCCTGCTC  250

seq1  CTGCCTTTTAAATGCTGGGACTAAAAGCATGCACCACCACATGAGGCTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTTAAATGCTGGGACTAAAAGCATGCACCACCACATGAGGCTTA  300

seq1  TGTTATTATTATTACTATTTTTTAAAGATGCTGAGGGAGGCTGGAGAGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTATTATTACTATTTTTTAAAGATGCTGAGGGAGGCTGGAGAGAT  350

seq1  GGCTCAGTGGTTAAGAACACTGACTTCTCTTCTAGGATCCTGAGTTCAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGTGGTTAAGAACACTGACTTCTCTTCTAGGATCCTGAGTTCAAT  400

seq1  TTCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGC  450

seq1  CTTCTGGTGTGTCTGAAGACAGTGACAATGTACTCACATACATAAAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTGTGTCTGAAGACAGTGACAATGTACTCACATACATAAAATAA  500

seq1  ATAAGTCTTTAAAAAAAAAAGATG  523
      ||||||||||||||||||||||||
seq2  ATAAGTCTTTAAAAAAAAAAGATG  524

seq1: chr17_33818082_33818575
seq2: B6Ng01-177N02.g_64_557

seq1  GAATTCAGGAATAAGAGGGAGGGGGAGTATGGTAAATTAAGAGACCAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAATAAGAGGGAGGGGGAGTATGGTAAATTAAGAGACCAATC  50

seq1  TACTGTGGTGTTTCAGATCAACCAAAGATACATAAGATCTTGCCTTAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGTGTTTCAGATCAACCAAAGATACATAAGATCTTGCCTTAACA  100

seq1  AACAAAAACAAAAACAGTAGGATTATGGTGGCTCTCTGTGAATTCCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACAAAAACAGTAGGATTATGGTGGCTCTCTGTGAATTCCAGGA  150

seq1  CAGCCAAGGCTACATAGACAAACCCTGTCTTAATTCCCTCTCATCAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAGGCTACATAGACAAACCCTGTCTTAATTCCCTCTCATCAAAAA  200

seq1  AAAACCCAAAATAAAAGTGCAACATTATTTTTCTTTGTTAATAAACATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAAAATAAAAGTGCAACATTATTTTTCTTTGTTAATAAACATCT  250

seq1  GCCAGGCATAGTAGAGAACACCTTTAATTCTAGCACTGAGAGGTGATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCATAGTAGAGAACACCTTTAATTCTAGCACTGAGAGGTGATCTC  300

seq1  TGAGTTTAGAGCAAACACAATCTAGTTTAAAGCAAACATGATCTAAAGTG  350
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGAGTTTAGAGCAAACACTATCTAGTTTAAAGCAAACATGATCTAAAGTG  350

seq1  AGACCCTGCCTCAACAAATATAAATTGAGTACAAAAAGATACTAAGACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTGCCTCAACAAATATAAATTGAGTACAAAAAGATACTAAGACAA  400

seq1  AAAGCGAGTTGGTATACGTTAAGAGCAAAATATGTAAGGACCAGTACTGT  450
      ||||||||||||||||||||||||||  |||||| |||||||||||||||
seq2  AAAGCGAGTTGGTATACGTTAAGAGCTTAATATGGAAGGACCAGTACTGT  450

seq1  GGGTAACAAAGAGTTAAGAGTCATACATCCAAGTCTGAATAATA  494
      |||||||||| |||||| ||||||||||||||||||||||||||
seq2  GGGTAACAAATAGTTAATAGTCATACATCCAAGTCTGAATAATA  494