BAC Information

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BAC

Clone NameB6Ng01-178K24
Chromosome17 (Build37)
Map Location 61,167,597 - 61,311,072
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043549
Downstream geneLOC433129, EG620725, LOC100043560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178K24.bB6Ng01-178K24.g
ACCGA005603GA005604
length1,1451,104
definitionB6Ng01-178K24.b B6Ng01-178K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,309,916 - 61,311,072)(61,167,597 - 61,168,705)
sequence
gaattcaacaagtttgactagtgtgtacatggatttagcatgttactgta
gattaacaaagctgagaaatcaagacattcctatgtttctctaaagactc
atgtgattttatatttaggtattcttaagacaaccacattaaaatctttc
catttcacttcaaatattttccttttaccacttatatttttaatatgttt
tggctaatattgttggtaaatcatgctatctggtaatacaaatacatttt
tgtgccaagagacacaaagaaactacctatattacatcttcctgttatgg
atcaagtgttcattagtatattctgttactatgattttatgtgatacatt
actcaaaacatacacatattttattgttagacacaactattttcatacag
tggaaaactaaaatatggttgtgtccactatatagcattcttgaaggagc
catggcattggagtagtctttttagtaattgaaagatctggttttaaaac
agtcatcctatgctttttaagattaaaacagtcagtgaaaatttaagaat
tttattctttctttaaggataggcaagtttaatttagttatatcagaata
ttaaaatatgcacaggcaaagaggaattgccatcaatataactagacttt
gccaaaatgttgggtgctatggattttttctaggcatagaacattgaaca
gtgtctgtagtgaactcattaattgtacccaaatagaaactaaaattcta
tttcaatgatagaatatttaagacaaataaaacacaaatattacaaatcc
atgtgtcattccatgaatagtcagggcagaatatgaagagggattataga
taagacagagaaaaataaagtcttgattagtttatttatgttattattta
atcttgataatactttgtgtagttcaaaggtaaattctaacttcatatat
agctgagaatgacaggtacccctgtctctgccttcaattgcctccattca
catcagaaaaaaaaaattaaactaggaacagtcataataaatacatctta
ttttatcgtttcgtttttctttttaaattaagatttattttttttccatt
tttatagcattaactcattacattgcaatgctatagcacaaaagt

gaattctttctaggttctgagaattttattcaaagaactgacataatggc
ttgcacagaatggcaaaagtagcaaagtgaatttatgtaaagtgatgcaa
cttagaggggcatactgtcaagactgacactgcaatctgaggaccttatg
ttccctccttcattgactcagtgtctttgaattgcagggatggctttcta
ccttgattgacagattaggttatatgttcatttgtctcactgtgttgtcc
tttccaagattgactctgattttagccacatggatatcaaattatgctca
gtgataagatgatgaaagggatggggttctcccaaaaggttatttggaag
gcttagtctgggttattgggtatgcctgccccaaaccagctcaggaaaac
taagtctttgtattcttcagagtgctattctttgagaatttatgtgaaca
gaaactgttcatagttaaaagttgttagaggtggaggaagatttgctgtt
gttatgagatgtggattctgatgtagaggagtaacacagagagttgcatt
gaggttgcattggttgtagaggggtgcacgtagacacagtgtgtgcagac
aaagacttaggcttctaaggaaagagagaagtatctagaactcaaaccaa
gtaaaggcccaggtaactaaattattccctatgcttgcctgtctcaggac
ttactatcctaccttttctgagatctgtctgcctctgcctcctgagttag
ccactatatgcctgactaccatttgctcctgaaagagaacggattttttt
ttcggagatattaaacacgctttaggatagtagaggctttagatgtcttg
tttcatatctcttccagtgttattgaaatatttaacgtatttttctttca
ataataaaataatatttcatagttataaaagtatgttttactaatattta
agtggaggaaagatgtacatccatatctagacagagcctgaggacatatt
tacctacacgcaaagacctagagttaatgtttttcatagggagcaattca
ctgatatctgttttaggtttagaattgtcttaggagaccaagactgaagg
gact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_61309916_61311072
seq2: B6Ng01-178K24.b_47_1191 (reverse)

seq1  ACTTT--TGGTATAGCATTGGAAATGTAAATGAGTTAAATACCTAATAAA  48
      |||||  || ||||||||| | ||||| ||||||||||    |||   ||
seq2  ACTTTTGTGCTATAGCATT-GCAATGT-AATGAGTTAA--TGCTA--TAA  44

seq1  AAATGGAAAAAAAAATAAATCTTAATTAAAAAAAAAAAAAAAAAAGAAAA  98
      |||||| |||||||||||||||||||| ||||| |||||         ||
seq2  AAATGG-AAAAAAAATAAATCTTAATTTAAAAAGAAAAA-------CGAA  86

seq1  AGGATAAAAT-AGATGTATTTATTTATGACTGTTCCTAGTTTAATTTTTT  147
      | |||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  ACGATAAAATAAGATGTATTTA-TTATGACTGTTCCTAGTTTAATTTTTT  135

seq1  TTTTCTGATGTGAATGGAGGCAATTGGAAGGCAGAGACAGGGGTACCTGT  197
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTTCTGATGTGAATGGAGGCAATT-GAAGGCAGAGACAGGGGTACCTGT  184

seq1  CATTCTCAGCTATATATGAAGTTAGAATTTACC-TTGAACTACACAAAGT  246
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CATTCTCAGCTATATATGAAGTTAGAATTTACCTTTGAACTACACAAAGT  234

seq1  ATTATCAAGATTAAATAATAACATAAATAAACTAATCAAGACTTTATTTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAAGATTAAATAATAACATAAATAAACTAATCAAGACTTTATTTT  284

seq1  TCTCTGTCTTATCTATAATCCCTCTTCATATTCTGCCCTGACTATTCATG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTTATCTATAATCCCTCTTCATATTCTGCCCTGACTATTCATG  334

seq1  GAATGACACATGGATTTGTAATATTTGTGTTTTATTTGTCTTAAATATTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACACATGGATTTGTAATATTTGTGTTTTATTTGTCTTAAATATTC  384

seq1  TATCATTGAAATAGAATTTTAGTTTCTATTTGGGTACAATTAATGAGTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTGAAATAGAATTTTAGTTTCTATTTGGGTACAATTAATGAGTTC  434

seq1  ACTACAGACACTGTTCAATGTTCTATGCCTAGAAAAAATCCATAGCACCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGACACTGTTCAATGTTCTATGCCTAGAAAAAATCCATAGCACCC  484

seq1  AACATTTTGGCAAAGTCTAGTTATATTGATGGCAATTCCTCTTTGCCTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTGGCAAAGTCTAGTTATATTGATGGCAATTCCTCTTTGCCTGT  534

seq1  GCATATTTTAATATTCTGATATAACTAAATTAAACTTGCCTATCCTTAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTTAATATTCTGATATAACTAAATTAAACTTGCCTATCCTTAAA  584

seq1  GAAAGAATAAAATTCTTAAATTTTCACTGACTGTTTTAATCTTAAAAAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATAAAATTCTTAAATTTTCACTGACTGTTTTAATCTTAAAAAGC  634

seq1  ATAGGATGACTGTTTTAAAACCAGATCTTTCAATTACTAAAAAGACTACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATGACTGTTTTAAAACCAGATCTTTCAATTACTAAAAAGACTACT  684

seq1  CCAATGCCATGGCTCCTTCAAGAATGCTATATAGTGGACACAACCATATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCCATGGCTCCTTCAAGAATGCTATATAGTGGACACAACCATATT  734

seq1  TTAGTTTTCCACTGTATGAAAATAGTTGTGTCTAACAATAAAATATGTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTCCACTGTATGAAAATAGTTGTGTCTAACAATAAAATATGTGT  784

seq1  ATGTTTTGAGTAATGTATCACATAAAATCATAGTAACAGAATATACTAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGAGTAATGTATCACATAAAATCATAGTAACAGAATATACTAAT  834

seq1  GAACACTTGATCCATAACAGGAAGATGTAATATAGGTAGTTTCTTTGTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTGATCCATAACAGGAAGATGTAATATAGGTAGTTTCTTTGTGT  884

seq1  CTCTTGGCACAAAAATGTATTTGTATTACCAGATAGCATGATTTACCAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGCACAAAAATGTATTTGTATTACCAGATAGCATGATTTACCAAC  934

seq1  AATATTAGCCAAAACATATTAAAAATATAAGTGGTAAAAGGAAAATATTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAGCCAAAACATATTAAAAATATAAGTGGTAAAAGGAAAATATTT  984

seq1  GAAGTGAAATGGAAAGATTTTAATGTGGTTGTCTTAAGAATACCTAAATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAAATGGAAAGATTTTAATGTGGTTGTCTTAAGAATACCTAAATA  1034

seq1  TAAAATCACATGAGTCTTTAGAGAAACATAGGAATGTCTTGATTTCTCAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCACATGAGTCTTTAGAGAAACATAGGAATGTCTTGATTTCTCAG  1084

seq1  CTTTGTTAATCTACAGTAACATGCTAAATCCATGTACACACTAGTCAAAC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTAATCTACAGTAACATGCTAAATCCATGTACACACTAGTCAAAC  1134

seq1  TTGTTGAATTC  1157
      |||||||||||
seq2  TTGTTGAATTC  1145


seq1: chr17_61167597_61168705
seq2: B6Ng01-178K24.g_64_1167

seq1  GAATTCTTTCTAGGTTCTGAGAATTTTATTCAAAGAACTGACATAATGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTAGGTTCTGAGAATTTTATTCAAAGAACTGACATAATGGC  50

seq1  TTGCACAGAATGGCAAAAGTAGCAAAGTGAATTTATGTAAAGTGATGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAGAATGGCAAAAGTAGCAAAGTGAATTTATGTAAAGTGATGCAA  100

seq1  CTTAGAGGGGCATACTGTCAAGACTGACACTGCAATCTGAGGACCTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGGGGCATACTGTCAAGACTGACACTGCAATCTGAGGACCTTATG  150

seq1  TTCCCTCCTTCATTGACTCAGTGTCTTTGAATTGCAGGGATGGCTTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCTTCATTGACTCAGTGTCTTTGAATTGCAGGGATGGCTTTCTA  200

seq1  CCTTGATTGACAGATTAGGTTATATGTTCATTTGTCTCACTGTGTTGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATTGACAGATTAGGTTATATGTTCATTTGTCTCACTGTGTTGTCC  250

seq1  TTTCCAAGATTGACTCTGATTTTAGCCACATGGATATCAAATTATGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAGATTGACTCTGATTTTAGCCACATGGATATCAAATTATGCTCA  300

seq1  GTGATAAGATGATGAAAGGGATGGGGTTCTCCCAAAAGGTTATTTGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAGATGATGAAAGGGATGGGGTTCTCCCAAAAGGTTATTTGGAAG  350

seq1  GCTTAGTCTGGGTTATTGGGTATGCCTGCCCCAAACCAGCTCAGGAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTCTGGGTTATTGGGTATGCCTGCCCCAAACCAGCTCAGGAAAAC  400

seq1  TAAGTCTTTGTATTCTTCAGAGTGCTATTCTTTGAGAATTTATGTGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTTTGTATTCTTCAGAGTGCTATTCTTTGAGAATTTATGTGAACA  450

seq1  GAAACTGTTCATAGTTAAAAGTTGTTAGAGGTGGAGGAAGATTTGCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGTTCATAGTTAAAAGTTGTTAGAGGTGGAGGAAGATTTGCTGTT  500

seq1  GTTATGAGATGTGGATTCTGATGTAGAGGAGTAACACAGAGAGTTGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAGATGTGGATTCTGATGTAGAGGAGTAACACAGAGAGTTGCATT  550

seq1  GAGGTTGCATTGGTTGTAGAGGGGTGCACGTAGACACAGTGTGTGCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGCATTGGTTGTAGAGGGGTGCACGTAGACACAGTGTGTGCAGAC  600

seq1  AAAGACTTAGGCTTCTAAGGAAAGAGAGAAGTATCTAGAACTCAAACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTTAGGCTTCTAAGGAAAGAGAGAAGTATCTAGAACTCAAACCAA  650

seq1  GTAAAGGCCCAGGTAACTAAATTATTCCCTATGCTTGCCTGTCTCAGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGCCCAGGTAACTAAATTATTCCCTATGCTTGCCTGTCTCAGGAC  700

seq1  TTACTATCCTACCTTTTCTGAGATCTGTCTGCCTCTGCCTCCTGAGTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATCCTACCTTTTCTGAGATCTGTCTGCCTCTGCCTCCTGAGTTAG  750

seq1  CCACTATATGCCTGACTACCATTTGCTCCTGAAAGAGAACGGA-TTTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCACTATATGCCTGACTACCATTTGCTCCTGAAAGAGAACGGATTTTTTT  800

seq1  TTCGGAGATATTAAACACGCTTTA-GATAGTAGAGGCTTTAGATGTCTTG  848
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTCGGAGATATTAAACACGCTTTAGGATAGTAGAGGCTTTAGATGTCTTG  850

seq1  TTTCATATCTCTTCCAGTGTTATTGAAATATTTAACGTA-TTTTCTTTCA  897
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTCATATCTCTTCCAGTGTTATTGAAATATTTAACGTATTTTTCTTTCA  900

seq1  ATAATAAAATAATATTTCATAGTTATAAAAGTATGTTTTACTAATATTTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAATAATATTTCATAGTTATAAAAGTATGTTTTACTAATATTTA  950

seq1  AGTGGAGGAAAGATGTACATCCATATCTAGACAGAGGCCTGAGGACATAT  997
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTGGAGGAAAGATGTACATCCATATCTAGACAGA-GCCTGAGGACATAT  999

seq1  TTACCTACAACGCAAAGACCTAGAGTTTAATG-TTTTCATAGGGAGCCAT  1046
      |||||||| |||||||||||||||| |||||| |||||||||||||| ||
seq2  TTACCTAC-ACGCAAAGACCTAGAG-TTAATGTTTTTCATAGGGAGCAAT  1047

seq1  TCACTGATATTCTGTTTTAGGTTTAGGAAAATTGTCTTAGGAGACCAAAG  1096
      ||||||||| ||||||||||||||||   ||||||||||||||||| |||
seq2  TCACTGATA-TCTGTTTTAGGTTTAG---AATTGTCTTAGGAGACC-AAG  1092

seq1  ACTGAAAGGGACT  1109
      |||| ||||||||
seq2  ACTG-AAGGGACT  1104


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