BAC Information

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BAC

Clone NameB6Ng01-181K01
Chromosome17 (Build37)
Map Location 46,250,662 - 46,379,822
singlet/doubletdoublet
Overlap geneMrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5
Upstream geneSupt3h, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa
Downstream geneRpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181K01.bB6Ng01-181K01.g
ACCGA007739GA007740
length1,1451,120
definitionB6Ng01-181K01.b B6Ng01-181K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,250,662 - 46,251,808)(46,378,702 - 46,379,822)
sequence
gaattctaaggtcagcctggcctacttagagagtccctgaccagccagag
ctacacagggaagctctgtttctgagatgggggtggaggcgagtgattga
caggtcctgacagcccaaagtgagagtgagcagattttggcagaagcaga
actgaagggagacaaatgaggatgctatgatttataagggccttcttgca
gtagtgtgcgaggttttcaataaccatctactcgtccatccttaaaggta
gacattagctgtctttattttgtgaatggggaaaaccagttgtaaagatg
tggtatcgcacccagcttgagctgtaagaagtaagagtggaaagtagagg
cagcactccccgcctccagtataacaacctctgcgctccgtggcaggcct
gcctcttgttccctcctctcctgaaaggcttttagcagttaacttgccaa
agaacagttagtgatttcatcaatgaaaatgtcagacttagcaaggattg
tgggagagattccctgccttactacgcggagagcccttgggaaggaagtg
cattcacaagaaaccgtgcacgcatgaagtaacaaccgtgcacctaggca
gagcgcactgagacgaggaaaggccgaccgatgggaatgggtttcatctg
tttcagtgagctcagaggtgttctctgataggggcagcagatacatagca
aagacctttgagagggaggaaaaagtgaggggttttaggatttgagtgtt
cttctaatgggaaatgtgttaagcagcaataagactcattctgaagccca
gggcagaaggatattctgtcaggaattctagggaagggccatgagagacc
attaaagagccagcaattcagatgatggaactgaaaggagatggtgcttg
agggaagcacaagcagtgttggcggttagggcacagggctgcctcccagc
cactccacgctgtgcttagattctccttccgcagacccttggattctcag
ctacttgctgctgtgggtcctgcaccctccttcatcatcttctctccctt
ctgcctcttgacaacagctacagttgaatgtgtctgttctccgacctctg
tacctcaccgcagcctcgttggtctgcttgcttgctcaggctgtt
gaattctgtttagctcttgttccctggacagtgcgctcagactttagcaa
tagctctgtaccatgggttcccaagtggccagattcttgctttagactga
gaaaactggccatatacgggtcagcatgtagcacctaggccagacatgcc
cctgggagtggaaaaggatccctgttagcccagcagcaaggggctcaagt
gggacccttgtagtccaaaagaaagcggctgagaccttgcacacacggtc
agtgggttgggcacagcaccccagtccttctgtctgtctgtctgcactgc
tgcagctgctctggagagaggcccttgtgctctagcttttcctggaaaag
cccagactgccggctggctaccagctcccgccacctctctggaatggcgt
aggtcccaacaccctgcactctagtaggatgacctgggtcctcgcgcagg
acccactctactccagcttgacccagatctgagctgctccaggctgactc
ggtggaaagtgaggcggcagtgcgaggagggcctagagattagctacacg
ggggaagaagagatgacaaccgaggccggagaaggatgcccaaaagcttg
attcagggttcaaagatggtggccagtccaccctcctcactgtccagcac
ttctgtctccaacattggtttgggttttttgaaaagccagggaaggttct
taatgtgaacttcttttcggaactgttctcccaagggtttctgaagaaaa
caaaaaagaaaactgatgctgagtccaggctgtgagttagagacatcctg
ccccacacccaccctcccctccaggctgtgagttagagacatctccgagc
cgcccccccccaccccctccggccacagaccagaagagtgagtgactagg
tagttggttttgagtttacccacaacagtcatagaacaacagcaactgtg
tgggactgcccacccttaacagaagatgcgtgacttaccccaatgcagca
agcgattagacgttgaagtggtcgtcgtcgtttatcagctgctttttgag
ggaggggttaaaagctgcagcattgtccagaagactcctgggtttaattc
atggaattctgctccattac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_46250662_46251808
seq2: B6Ng01-181K01.b_45_1189

seq1  GAATTCTAAGGTCAGCCTGGCCTACTTAGAGAGTCCCTGACCAGCCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGGTCAGCCTGGCCTACTTAGAGAGTCCCTGACCAGCCAGAG  50

seq1  CTACACAGGGAAGCTCTGTTTCTGAGATGGGGGTGGAGGCGAGTGATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGGGAAGCTCTGTTTCTGAGATGGGGGTGGAGGCGAGTGATTGA  100

seq1  CAGGTCCTGACAGCCCAAAGTGAGAGTGAGCAGATTTTGGCAGAAGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTGACAGCCCAAAGTGAGAGTGAGCAGATTTTGGCAGAAGCAGA  150

seq1  ACTGAAGGGAGACAAATGAGGATGCTATGATTTATAAGGGCCTTCTTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGGGAGACAAATGAGGATGCTATGATTTATAAGGGCCTTCTTGCA  200

seq1  GTAGTGTGCGAGGTTTTCAATAACCATCTACTCGTCCATCCTTAAAGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTGCGAGGTTTTCAATAACCATCTACTCGTCCATCCTTAAAGGTA  250

seq1  GACATTAGCTGTCTTTATTTTGTGAATGGGGAAAACCAGTTGTAAAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTAGCTGTCTTTATTTTGTGAATGGGGAAAACCAGTTGTAAAGATG  300

seq1  TGGTATCGCACCCAGCTTGAGCTGTAAGAAGTAAGAGTGGAAAGTAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCGCACCCAGCTTGAGCTGTAAGAAGTAAGAGTGGAAAGTAGAGG  350

seq1  CAGCACTCCCCGCCTCCAGTATAACAACCTCTGCGCTCCGTGGCAGGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTCCCCGCCTCCAGTATAACAACCTCTGCGCTCCGTGGCAGGCCT  400

seq1  GCCTCTTGTTCCCTCCTCTCCTGAAAGGCTTTTAGCAGTTAACTTGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTGTTCCCTCCTCTCCTGAAAGGCTTTTAGCAGTTAACTTGCCAA  450

seq1  AGAACAGTTAGTGATTTCATCAATGAAAATGTCAGACTTAGCAAGGATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGTTAGTGATTTCATCAATGAAAATGTCAGACTTAGCAAGGATTG  500

seq1  TGGGAGAGATTCCCTGCCTTACTACGCGGAGAGCCCTTGGGAAGGAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAGATTCCCTGCCTTACTACGCGGAGAGCCCTTGGGAAGGAAGTG  550

seq1  CATTCACAAGAAACCGTGCACGCATGAAGTAACAACCGTGCACCTAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACAAGAAACCGTGCACGCATGAAGTAACAACCGTGCACCTAGGCA  600

seq1  GAGCGCACTGAGACGAGGAAAGGCCGACCGATGGGAATGGGTTTCATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCACTGAGACGAGGAAAGGCCGACCGATGGGAATGGGTTTCATCTG  650

seq1  TTTCAGTGAGCTCAGAGGTGTTCTCTGATAGGGGCAGCAGATACATAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGAGCTCAGAGGTGTTCTCTGATAGGGGCAGCAGATACATAGCA  700

seq1  AAGACCTTTGAGAGGGAGGAAAAAGTGAGGGGTTTTAGGATTTGAGTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTTTGAGAGGGAGGAAAAAGTGAGGGGTTTTAGGATTTGAGTGTT  750

seq1  CTTCTAATGGGAAATGTGTTAAGCAGCAATAAGACTCATTCTGAAGCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAATGGGAAATGTGTTAAGCAGCAATAAGACTCATTCTGAAGCCCA  800

seq1  GGGCAGAAGGATATTCTGTCAGGAATTCTAGGGAAGGGCCATGAGAGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAAGGATATTCTGTCAGGAATTCTAGGGAAGGGCCATGAGAGACC  850

seq1  ATTAAAGAGCCAGCAATTCAGATGATGGAACTG-AAGGAGATGGTGCTTG  899
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTAAAGAGCCAGCAATTCAGATGATGGAACTGAAAGGAGATGGTGCTTG  900

seq1  AGGGAAGCACAAGCAGTGTTGGCGGTTAGGGCACAGGGCTGCCTCCCAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGCACAAGCAGTGTTGGCGGTTAGGGCACAGGGCTGCCTCCCAGC  950

seq1  CACTCCACGCTGTGCTTAGA-TCTCCTTCCGCAGACCCTTGGATTCTTCA  998
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  CACTCCACGCTGTGCTTAGATTCTCCTTCCGCAGACCCTTGGATTC-TCA  999

seq1  GCTACTTGCTGCTGTGGGGCCCTGCACCCTTCTTCCATCATCTCTCTTCC  1048
      ||||||||||||||| ||| |||||||||| ||| |||||||| |||  |
seq2  GCTACTTGCTGCTGT-GGGTCCTGCACCCTCCTT-CATCATCT-TCTCTC  1046

seq1  CTTTCTGCCTCCTTGACCAAACAGCCACAGTTG-ATGTGCCCG-TCTCCA  1096
      | |||||||| ||||||  |||||| ||||||| ||||| | | ||||| 
seq2  CCTTCTGCCT-CTTGAC--AACAGCTACAGTTGAATGTGTCTGTTCTCCG  1093

seq1  GCTTCTGCACC-CACCGCAGCCTCGTTGTGCTGC-TGCTTGCTCCAGGCT  1144
       | |||| ||| ||||||||||||||||  |||| |||||||| ||||||
seq2  ACCTCTGTACCTCACCGCAGCCTCGTTGGTCTGCTTGCTTGCT-CAGGCT  1142

seq1  GTT  1147
      |||
seq2  GTT  1145

seq1: chr17_46378702_46379822
seq2: B6Ng01-181K01.g_65_1184 (reverse)

seq1  GTAATGGAGCAGA--TCCCTGAAATAAA-CAAGGAGTC-TCTGGACCAAT  46
      |||||||||||||  ||| |||| |||| | ||||||| |||||| ||||
seq2  GTAATGGAGCAGAATTCCATGAATTAAACCCAGGAGTCTTCTGGA-CAAT  49

seq1  TTGACTGCAAGCTTTTAAACCCCTCCCTTCAAAAAGCAGCTGATAAACGA  96
          |||| ||||||| |||||||||| ||||||||||||||||||||||
seq2  ---GCTGC-AGCTTTT-AACCCCTCCC-TCAAAAAGCAGCTGATAAACGA  93

seq1  CGGAAGGACCACTTCAAACGTCTAATCGCTGGCTGCATTGGGGTAAGTCA  146
      ||  | ||||||||| |||||||||||||| |||||||||||||||||||
seq2  CG--ACGACCACTTC-AACGTCTAATCGCTTGCTGCATTGGGGTAAGTCA  140

seq1  CGCATC-TCTGTT-AGGGTGGGCAGTCCCACACAGTTGCTTGTTG-TCTA  193
      |||||| |||||| ||||||||||||||||||||||||| ||||| ||||
seq2  CGCATCTTCTGTTAAGGGTGGGCAGTCCCACACAGTTGC-TGTTGTTCTA  189

seq1  TGACTGTTGTGGGTAAACTCAAAACCAACTA-CTAGTCACTCACTCTTCT  242
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGACTGTTGTGGGTAAACTCAAAACCAACTACCTAGTCACTCACTCTTCT  239

seq1  GGTCTGTGG-CGGAGGGGGT-GGGGGGGGCGGCTCGGAGATGTCTCTAAC  290
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  GGTCTGTGGCCGGAGGGGGTGGGGGGGGGCGGCTCGGAGATGTCTCTAAC  289

seq1  TCACAGCCTGGAGGGGAGGGTGGGTGTGGGGCAGGATGTCTCTAACTCAC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCCTGGAGGGGAGGGTGGGTGTGGGGCAGGATGTCTCTAACTCAC  339

seq1  AGCCTGGACTCAGCATCAGTTTTCTTTTTTGTTTTCTTCAGAAACCCTTG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGACTCAGCATCAGTTTTCTTTTTTGTTTTCTTCAGAAACCCTTG  389

seq1  GGAGAACAGTTCCGAAAAGAAGTTCACATTAAGAACCTTCCCTGGCTTTT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACAGTTCCGAAAAGAAGTTCACATTAAGAACCTTCCCTGGCTTTT  439

seq1  CAAAAAACCCAAACCAATGTTGGAGACAGAAGTGCTGGACAGTGAGGAGG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACCCAAACCAATGTTGGAGACAGAAGTGCTGGACAGTGAGGAGG  489

seq1  GTGGACTGGCCACCATCTTTGAACCCTGAATCAAGCTTTTGGGCATCCTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTGGCCACCATCTTTGAACCCTGAATCAAGCTTTTGGGCATCCTT  539

seq1  CTCCGGCCTCGGTTGTCATCTCTTCTTCCCCCGTGTAGCTAATCTCTAGG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGCCTCGGTTGTCATCTCTTCTTCCCCCGTGTAGCTAATCTCTAGG  589

seq1  CCCTCCTCGCACTGCCGCCTCACTTTCCACCGAGTCAGCCTGGAGCAGCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCGCACTGCCGCCTCACTTTCCACCGAGTCAGCCTGGAGCAGCT  639

seq1  CAGATCTGGGTCAAGCTGGAGTAGAGTGGGTCCTGCGCGAGGACCCAGGT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTGGGTCAAGCTGGAGTAGAGTGGGTCCTGCGCGAGGACCCAGGT  689

seq1  CATCCTACTAGAGTGCAGGGTGTTGGGACCTACGCCATTCCAGAGAGGTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTACTAGAGTGCAGGGTGTTGGGACCTACGCCATTCCAGAGAGGTG  739

seq1  GCGGGAGCTGGTAGCCAGCCGGCAGTCTGGGCTTTTCCAGGAAAAGCTAG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAGCTGGTAGCCAGCCGGCAGTCTGGGCTTTTCCAGGAAAAGCTAG  789

seq1  AGCACAAGGGCCTCTCTCCAGAGCAGCTGCAGCAGTGCAGACAGACAGAC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAGGGCCTCTCTCCAGAGCAGCTGCAGCAGTGCAGACAGACAGAC  839

seq1  AGAAGGACTGGGGTGCTGTGCCCAACCCACTGACCGTGTGTGCAAGGTCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGACTGGGGTGCTGTGCCCAACCCACTGACCGTGTGTGCAAGGTCT  889

seq1  CAGCCGCTTTCTTTTGGACTACAAGGGTCCCACTTGAGCCCCTTGCTGCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGCTTTCTTTTGGACTACAAGGGTCCCACTTGAGCCCCTTGCTGCT  939

seq1  GGGCTAACAGGGATCCTTTTCCACTCCCAGGGGCATGTCTGGCCTAGGTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAACAGGGATCCTTTTCCACTCCCAGGGGCATGTCTGGCCTAGGTG  989

seq1  CTACATGCTGACCCGTATATGGCCAGTTTTCTCAGTCTAAAGCAAGAATC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGCTGACCCGTATATGGCCAGTTTTCTCAGTCTAAAGCAAGAATC  1039

seq1  TGGCCACTTGGGAACCCATGGTACAGAGCTATTGCTAAAGTCTGAGCGCA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACTTGGGAACCCATGGTACAGAGCTATTGCTAAAGTCTGAGCGCA  1089

seq1  CTGTCCAGGGAACAAGAGCTAAACAGAATTC  1121
      |||||||||||||||||||||||||||||||
seq2  CTGTCCAGGGAACAAGAGCTAAACAGAATTC  1120